Wall clock time and date at job start Tue Mar 31 2020 05:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46679 * 2 1 4 4 N 1.28719 * 125.86678 * 270.02349 * 3 2 1 5 5 N 1.28632 * 110.18080 * 179.97438 * 4 3 2 6 6 C 1.33783 * 108.88187 * 359.76805 * 5 4 3 7 7 C 1.50704 * 126.75035 * 180.23112 * 6 5 4 8 8 C 1.35311 * 125.87144 * 89.99768 * 3 2 1 9 9 C 1.50695 * 126.90903 * 359.97438 * 8 3 2 10 10 N 1.46497 * 109.47628 * 89.99589 * 9 8 3 11 11 C 1.39687 * 120.00269 * 179.72136 * 10 9 8 12 12 C 1.39337 * 119.95181 * 0.02562 * 11 10 9 13 13 C 1.38473 * 120.42369 * 179.72060 * 12 11 10 14 14 C 1.37689 * 120.32417 * 0.54913 * 13 12 11 15 15 C 1.40747 * 119.89502 * 359.72729 * 14 13 12 16 16 C 1.41405 * 120.21100 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00416 * 204.45161 * 16 15 14 18 18 C 1.39933 * 119.99724 * 24.44500 * 16 15 14 19 19 N 1.30827 * 120.00318 * 17.89701 * 18 16 15 20 20 Si 1.86804 * 119.99884 * 197.89820 * 18 16 15 21 21 H 1.48502 * 109.47289 * 59.99767 * 20 18 16 22 22 H 1.48499 * 109.47263 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47013 * 300.00174 * 20 18 16 24 24 C 1.38278 * 119.95016 * 180.26986 * 11 10 9 25 25 H 1.08996 * 109.47160 * 299.99923 * 1 2 3 26 26 H 1.08995 * 109.47224 * 60.00183 * 1 2 3 27 27 H 1.08998 * 109.46677 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47160 * 240.00077 * 2 1 3 29 29 H 1.08995 * 109.47224 * 119.99817 * 2 1 3 30 30 H 1.08997 * 109.46847 * 270.16359 * 7 6 5 31 31 H 1.08997 * 109.46936 * 30.15878 * 7 6 5 32 32 H 1.08997 * 109.46826 * 150.15852 * 7 6 5 33 33 H 1.08998 * 109.47447 * 329.99256 * 9 8 3 34 34 H 1.09003 * 109.47249 * 209.99346 * 9 8 3 35 35 H 0.96998 * 119.99579 * 359.97438 * 10 9 8 36 36 H 1.08003 * 119.78478 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.83588 * 180.27936 * 13 12 11 38 38 H 1.08004 * 120.05310 * 179.74450 * 14 13 12 39 39 H 0.97000 * 120.00268 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.16554 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2692 2.0924 -1.0431 5 7 2.6816 3.2602 -0.6953 6 6 2.7017 3.3322 0.6404 7 6 3.1136 4.5186 1.4734 8 6 2.2825 2.1288 1.0965 9 6 2.1332 1.7084 2.5359 10 7 3.3869 1.1113 3.0028 11 6 3.4933 0.6483 4.3164 12 6 2.4063 0.7544 5.1817 13 6 2.4992 0.2934 6.4841 14 6 3.6715 -0.2651 6.9419 15 6 4.7798 -0.3738 6.0812 16 6 5.9868 -0.9467 6.5442 17 1 6.9227 -0.6914 6.0697 18 6 5.9686 -1.8444 7.6175 19 7 4.8488 -2.4239 7.9667 20 14 7.5431 -2.2154 8.5517 21 1 8.0757 -0.9612 9.1420 22 1 7.2582 -3.1908 9.6345 23 1 8.5475 -2.7896 7.6206 24 6 4.6789 0.0900 4.7577 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 4.1835 4.4669 1.6753 31 1 2.8902 5.4378 0.9319 32 1 2.5651 4.5093 2.4152 33 1 1.3293 0.9772 2.6194 34 1 1.8965 2.5799 3.1463 35 1 4.1442 1.0408 2.4009 36 1 1.4841 1.1953 4.8330 37 1 1.6493 0.3763 7.1453 38 1 3.7404 -0.6195 7.9598 39 1 4.8363 -3.0465 8.7104 40 1 5.5232 0.0104 4.0890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449692215.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:18 Heat of formation + Delta-G solvation = 108.689115 kcal Electronic energy + Delta-G solvation = -21768.757501 eV Core-core repulsion = 18584.949025 eV Total energy + Delta-G solvation = -3183.808477 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.36456 -37.95806 -35.84320 -35.38757 -33.51393 -32.32720 -31.01721 -29.82844 -28.76913 -27.24830 -25.41703 -25.11345 -24.40193 -21.31455 -21.17027 -20.57801 -20.02921 -17.48127 -17.20309 -16.38948 -15.65378 -15.46320 -15.04745 -14.68927 -14.28561 -14.17651 -13.71619 -13.47716 -13.28742 -12.87923 -12.79395 -12.65525 -12.53465 -12.26028 -12.15052 -11.82138 -11.64468 -11.52964 -11.20997 -11.10344 -10.78305 -10.63149 -10.48673 -10.10201 -9.86399 -9.39093 -9.28954 -9.03131 -8.84389 -7.45547 -6.76551 -6.34047 -4.36707 1.43897 2.23690 2.46243 2.82463 3.06492 3.09321 3.16423 3.30433 3.93007 4.12940 4.23805 4.37233 4.55812 4.65526 4.67450 4.85935 4.87794 5.06265 5.24528 5.39971 5.52290 5.64473 5.71753 5.73049 5.77200 5.88862 5.94315 6.23172 6.25911 6.43817 6.51138 6.91744 6.97082 7.06444 7.26614 7.29853 7.67743 7.83521 8.07600 8.17063 8.42687 8.46075 8.47349 8.71767 8.94163 9.04477 10.19492 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.003432 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.195214 B = 8157.166423 C = 8385.869532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.279 5.279 4 N -0.086 5.086 5 N -0.274 5.274 6 C -0.007 4.007 7 C -0.067 4.067 8 C -0.029 4.029 9 C 0.213 3.787 10 N -0.759 5.759 11 C 0.224 3.776 12 C -0.303 4.303 13 C -0.074 4.074 14 C -0.197 4.197 15 C 0.142 3.858 16 C -0.464 4.464 17 H 0.076 0.924 18 C 0.079 3.921 19 N -0.791 5.791 20 Si 0.906 3.094 21 H -0.263 1.263 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.287 4.287 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.389 0.611 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.280 0.720 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.750 4.431 -9.201 12.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.015 4.015 3 N -0.074 5.074 4 N -0.064 5.064 5 N -0.140 5.140 6 C -0.146 4.146 7 C -0.125 4.125 8 C -0.161 4.161 9 C 0.086 3.914 10 N -0.394 5.394 11 C 0.126 3.874 12 C -0.326 4.326 13 C -0.093 4.093 14 C -0.217 4.217 15 C 0.139 3.861 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.139 4.139 19 N -0.416 5.416 20 Si 0.730 3.270 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.311 4.311 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.222 0.778 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.091 0.909 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.042 4.306 -10.591 13.427 hybrid contribution 0.838 -0.591 1.247 1.614 sum -6.204 3.715 -9.344 11.815 Atomic orbital electron populations 1.22153 0.92903 1.04061 1.03518 1.22174 0.96419 0.76669 1.06261 1.47348 1.42316 1.13322 1.04385 1.78239 1.17087 0.99131 1.11993 1.75052 1.16504 1.10518 1.11946 1.21869 1.04887 0.96427 0.91389 1.20095 1.02108 0.92842 0.97496 1.22085 1.08972 0.93066 0.91961 1.19362 0.89165 0.98329 0.84554 1.44403 1.13049 1.70354 1.11636 1.17413 0.94386 0.93324 0.82281 1.19824 0.97548 1.19291 0.95897 1.20430 0.96753 0.97804 0.94348 1.21197 0.93715 1.06417 1.00385 1.17325 0.92599 0.86945 0.89224 1.19536 0.94483 1.22316 1.13072 0.90632 1.25888 0.97557 0.94257 0.96242 1.69841 1.27834 1.20237 1.23684 0.86411 0.82203 0.78958 0.79386 1.18804 1.20366 1.19080 1.20385 0.96184 1.17473 0.97009 0.91439 0.91425 0.89521 0.87514 0.87187 0.90444 0.90711 0.90446 0.91998 0.90264 0.77753 0.89728 0.89584 0.86738 0.90911 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.24 37.16 0.38 -0.92 16 2 C 0.11 0.99 6.75 -4.04 -0.03 0.96 16 3 N -0.28 -3.57 3.34 -57.05 -0.19 -3.76 16 4 N -0.09 -1.29 13.16 60.35 0.79 -0.50 16 5 N -0.27 -4.32 12.41 33.29 0.41 -3.91 16 6 C -0.01 -0.09 7.25 -82.77 -0.60 -0.69 16 7 C -0.07 -0.74 10.27 36.01 0.37 -0.37 16 8 C -0.03 -0.38 6.36 -82.09 -0.52 -0.91 16 9 C 0.21 2.89 4.79 -5.20 -0.02 2.86 16 10 N -0.76 -12.53 5.72 -59.86 -0.34 -12.87 16 11 C 0.22 4.68 6.64 -83.86 -0.56 4.12 16 12 C -0.30 -6.38 9.32 -39.09 -0.36 -6.75 16 13 C -0.07 -1.69 10.01 -39.70 -0.40 -2.09 16 14 C -0.20 -5.03 8.70 -38.83 -0.34 -5.37 16 15 C 0.14 3.73 5.57 -106.85 -0.60 3.13 16 16 C -0.46 -12.21 9.05 -37.74 -0.34 -12.55 16 17 H 0.08 1.92 7.91 -52.49 -0.41 1.50 16 18 C 0.08 1.95 5.14 -17.35 -0.09 1.86 16 19 N -0.79 -20.19 10.96 55.55 0.61 -19.58 16 20 Si 0.91 18.46 29.60 -169.99 -5.03 13.43 16 21 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 24 C -0.29 -6.83 9.63 -38.67 -0.37 -7.20 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.11 1.04 7.72 -51.93 -0.40 0.64 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.78 7.31 -51.93 -0.38 0.40 16 33 H 0.06 0.81 7.62 -51.93 -0.40 0.41 16 34 H 0.08 1.05 7.09 -51.93 -0.37 0.68 16 35 H 0.39 6.28 8.47 -40.82 -0.35 5.93 16 36 H 0.08 1.57 6.70 -52.48 -0.35 1.21 16 37 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.11 3.04 6.15 -52.48 -0.32 2.72 16 39 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 40 H 0.09 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -29.27 338.47 -7.62 -36.89 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.50 Total: 9.11 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -3.48 Total: -23.91 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 1.28 Total: -40.62 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.27 -7.62 -36.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449692215.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.579 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds