Wall clock time and date at job start Tue Mar 31 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46679 * 2 1 4 4 N 1.28719 * 125.86678 * 270.02349 * 3 2 1 5 5 N 1.28632 * 110.18080 * 179.97438 * 4 3 2 6 6 C 1.33783 * 108.88187 * 359.76805 * 5 4 3 7 7 C 1.50704 * 126.75035 * 180.23112 * 6 5 4 8 8 C 1.35311 * 125.87144 * 89.99768 * 3 2 1 9 9 C 1.50695 * 126.90903 * 359.97438 * 8 3 2 10 10 N 1.46497 * 109.47628 * 89.99589 * 9 8 3 11 11 C 1.39687 * 120.00269 * 179.72136 * 10 9 8 12 12 C 1.39337 * 119.95181 * 0.02562 * 11 10 9 13 13 C 1.38473 * 120.42369 * 179.72060 * 12 11 10 14 14 C 1.37689 * 120.32417 * 0.54913 * 13 12 11 15 15 C 1.40747 * 119.89502 * 359.72729 * 14 13 12 16 16 C 1.41405 * 120.21100 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00416 * 204.45161 * 16 15 14 18 18 C 1.39933 * 119.99724 * 24.44500 * 16 15 14 19 19 N 1.30827 * 120.00318 * 17.89701 * 18 16 15 20 20 Si 1.86804 * 119.99884 * 197.89820 * 18 16 15 21 21 H 1.48502 * 109.47289 * 59.99767 * 20 18 16 22 22 H 1.48499 * 109.47263 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47013 * 300.00174 * 20 18 16 24 24 C 1.38278 * 119.95016 * 180.26986 * 11 10 9 25 25 H 1.08996 * 109.47160 * 299.99923 * 1 2 3 26 26 H 1.08995 * 109.47224 * 60.00183 * 1 2 3 27 27 H 1.08998 * 109.46677 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47160 * 240.00077 * 2 1 3 29 29 H 1.08995 * 109.47224 * 119.99817 * 2 1 3 30 30 H 1.08997 * 109.46847 * 270.16359 * 7 6 5 31 31 H 1.08997 * 109.46936 * 30.15878 * 7 6 5 32 32 H 1.08997 * 109.46826 * 150.15852 * 7 6 5 33 33 H 1.08998 * 109.47447 * 329.99256 * 9 8 3 34 34 H 1.09003 * 109.47249 * 209.99346 * 9 8 3 35 35 H 0.96998 * 119.99579 * 359.97438 * 10 9 8 36 36 H 1.08003 * 119.78478 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.83588 * 180.27936 * 13 12 11 38 38 H 1.08004 * 120.05310 * 179.74450 * 14 13 12 39 39 H 0.97000 * 120.00268 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.16554 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2692 2.0924 -1.0431 5 7 2.6816 3.2602 -0.6953 6 6 2.7017 3.3322 0.6404 7 6 3.1136 4.5186 1.4734 8 6 2.2825 2.1288 1.0965 9 6 2.1332 1.7084 2.5359 10 7 3.3869 1.1113 3.0028 11 6 3.4933 0.6483 4.3164 12 6 2.4063 0.7544 5.1817 13 6 2.4992 0.2934 6.4841 14 6 3.6715 -0.2651 6.9419 15 6 4.7798 -0.3738 6.0812 16 6 5.9868 -0.9467 6.5442 17 1 6.9227 -0.6914 6.0697 18 6 5.9686 -1.8444 7.6175 19 7 4.8488 -2.4239 7.9667 20 14 7.5431 -2.2154 8.5517 21 1 8.0757 -0.9612 9.1420 22 1 7.2582 -3.1908 9.6345 23 1 8.5475 -2.7896 7.6206 24 6 4.6789 0.0900 4.7577 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 4.1835 4.4669 1.6753 31 1 2.8902 5.4378 0.9319 32 1 2.5651 4.5093 2.4152 33 1 1.3293 0.9772 2.6194 34 1 1.8965 2.5799 3.1463 35 1 4.1442 1.0408 2.4009 36 1 1.4841 1.1953 4.8330 37 1 1.6493 0.3763 7.1453 38 1 3.7404 -0.6195 7.9598 39 1 4.8363 -3.0465 8.7104 40 1 5.5232 0.0104 4.0890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449692215.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:17 Heat of formation + Delta-G solvation = 91.695595 kcal Electronic energy + Delta-G solvation = -21769.494396 eV Core-core repulsion = 18584.949025 eV Total energy + Delta-G solvation = -3184.545371 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.41287 -39.64051 -37.08780 -36.55818 -35.16394 -33.56326 -31.95622 -31.64581 -30.08333 -28.45929 -27.13398 -26.45548 -25.31224 -22.79209 -22.30607 -22.09995 -21.41754 -19.20307 -18.20021 -17.58960 -17.18491 -17.00042 -16.32681 -15.96719 -15.86276 -15.24186 -14.78486 -14.62339 -14.49749 -14.31727 -14.14053 -13.88005 -13.62354 -13.44184 -13.33707 -12.98578 -12.86726 -12.79683 -12.67260 -12.47976 -12.38892 -12.11395 -11.78309 -11.69916 -11.19825 -11.06001 -11.04368 -10.50048 -10.10809 -9.30688 -8.59480 -7.97538 -6.30395 0.38402 1.08158 1.32324 1.36733 1.38041 1.40638 1.50803 1.61757 2.23650 2.80559 2.83395 3.22078 3.47490 3.69648 3.82778 3.87631 3.90809 4.18677 4.22152 4.44839 4.53250 4.64863 4.68656 4.75664 4.77456 4.79660 4.90295 5.04346 5.09918 5.17166 5.19083 5.22798 5.33188 5.42793 5.53018 5.59283 5.92613 6.03998 6.22712 6.33295 6.62603 6.90259 6.93524 7.04999 7.22607 7.39029 8.38303 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.003432 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.195214 B = 8157.166423 C = 8385.869532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 N -0.270 5.270 4 N -0.104 5.104 5 N -0.304 5.304 6 C -0.012 4.012 7 C -0.067 4.067 8 C -0.032 4.032 9 C 0.216 3.784 10 N -0.748 5.748 11 C 0.239 3.761 12 C -0.296 4.296 13 C -0.074 4.074 14 C -0.230 4.230 15 C 0.113 3.887 16 C -0.505 4.505 17 H 0.070 0.930 18 C 0.039 3.961 19 N -0.822 5.822 20 Si 0.977 3.023 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.262 1.262 24 C -0.308 4.308 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.392 0.608 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.287 0.713 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.757 4.711 -9.550 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.066 5.066 4 N -0.082 5.082 5 N -0.170 5.170 6 C -0.151 4.151 7 C -0.126 4.126 8 C -0.165 4.165 9 C 0.091 3.909 10 N -0.382 5.382 11 C 0.138 3.862 12 C -0.319 4.319 13 C -0.093 4.093 14 C -0.251 4.251 15 C 0.110 3.890 16 C -0.535 4.535 17 H 0.088 0.912 18 C -0.176 4.176 19 N -0.448 5.448 20 Si 0.798 3.202 21 H -0.186 1.186 22 H -0.191 1.191 23 H -0.186 1.186 24 C -0.333 4.333 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.128 0.872 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.226 0.774 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.073 4.597 -10.995 14.395 hybrid contribution 1.019 -0.625 1.207 1.699 sum -7.054 3.972 -9.788 12.702 Atomic orbital electron populations 1.22135 0.91380 1.05425 1.03032 1.22518 0.97644 0.75106 1.07068 1.47656 1.41042 1.14059 1.03798 1.78184 1.17805 0.99412 1.12784 1.75031 1.17711 1.11160 1.13070 1.22352 1.04252 0.97461 0.91081 1.20201 1.02278 0.92317 0.97758 1.22028 1.09461 0.93072 0.91917 1.19478 0.87804 0.98969 0.84690 1.44390 1.14411 1.69393 1.09961 1.17378 0.93216 0.91670 0.83912 1.20170 0.98700 1.18006 0.95019 1.20737 0.96397 0.96530 0.95588 1.21121 0.95145 1.09052 0.99794 1.17657 0.93091 0.87755 0.90455 1.19781 0.94575 1.24091 1.15066 0.91226 1.26676 1.00915 0.93516 0.96480 1.69896 1.29789 1.20783 1.24299 0.85340 0.77908 0.78869 0.78091 1.18614 1.19109 1.18608 1.20480 0.97534 1.18767 0.96476 0.91816 0.91950 0.87233 0.86153 0.86986 0.90346 0.89764 0.89135 0.90528 0.88969 0.77448 0.86177 0.87243 0.88771 0.90284 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 10.24 71.98 0.74 -1.33 16 2 C 0.10 1.58 6.75 86.38 0.58 2.16 16 3 N -0.27 -6.40 3.34 -334.41 -1.12 -7.51 16 4 N -0.10 -2.99 13.16 37.02 0.49 -2.50 16 5 N -0.30 -9.28 12.41 -48.59 -0.60 -9.88 16 6 C -0.01 -0.30 7.25 41.60 0.30 0.00 16 7 C -0.07 -1.35 10.27 71.24 0.73 -0.62 16 8 C -0.03 -0.78 6.36 41.35 0.26 -0.52 16 9 C 0.22 5.14 4.79 85.63 0.41 5.55 16 10 N -0.75 -22.84 5.72 -343.31 -1.96 -24.81 16 11 C 0.24 9.57 6.64 38.16 0.25 9.82 16 12 C -0.30 -11.67 9.32 22.59 0.21 -11.46 16 13 C -0.07 -3.27 10.01 22.20 0.22 -3.04 16 14 C -0.23 -12.02 8.70 22.75 0.20 -11.82 16 15 C 0.11 6.11 5.57 -21.31 -0.12 5.99 16 16 C -0.51 -27.56 9.05 23.46 0.21 -27.35 16 17 H 0.07 3.70 7.91 -2.91 -0.02 3.67 16 18 C 0.04 1.99 5.14 85.25 0.44 2.43 16 19 N -0.82 -43.06 10.96 21.82 0.24 -42.82 16 20 Si 0.98 38.40 29.60 68.60 2.03 40.43 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 23 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 24 C -0.31 -14.80 9.63 22.86 0.22 -14.58 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.11 1.83 7.72 -2.39 -0.02 1.81 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.56 7.31 -2.39 -0.02 1.55 16 33 H 0.08 1.67 7.62 -2.39 -0.02 1.65 16 34 H 0.09 2.05 7.09 -2.39 -0.02 2.03 16 35 H 0.39 11.90 8.47 -92.71 -0.79 11.11 16 36 H 0.12 3.87 6.70 -2.91 -0.02 3.85 16 37 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.09 5.20 6.15 -2.91 -0.02 5.18 16 39 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 40 H 0.09 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -64.54 338.47 4.01 -60.53 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.27 Total: 31.35 kcal Atomic # 6 Polarization: -49.44 SS G_CDS: 4.66 Total: -44.78 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -2.96 Total: -87.53 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -64.54 4.01 -60.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449692215.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.225 kcal (2) G-P(sol) polarization free energy of solvation -64.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds