Wall clock time and date at job start Tue Mar 31 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47316 * 2 1 4 4 H 1.08998 * 109.47447 * 305.04748 * 3 2 1 5 5 C 1.50699 * 109.46909 * 185.04916 * 3 2 1 6 6 H 1.08003 * 119.99633 * 240.00231 * 5 3 2 7 7 C 1.37872 * 120.00377 * 60.00141 * 5 3 2 8 8 N 1.31517 * 119.99921 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00357 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47191 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47128 * 119.99993 * 9 7 5 12 12 H 1.48493 * 109.47376 * 240.00347 * 9 7 5 13 13 N 1.46901 * 109.46638 * 65.04965 * 3 2 1 14 14 C 1.46901 * 110.99974 * 254.92128 * 13 3 2 15 15 C 1.50695 * 109.47280 * 275.98622 * 14 13 3 16 16 N 1.30853 * 125.98836 * 94.19653 * 15 14 13 17 17 C 1.33254 * 109.84853 * 179.97438 * 16 15 14 18 18 N 1.30748 * 109.00057 * 359.97438 * 17 16 15 19 19 N 1.34726 * 125.98711 * 273.88651 * 15 14 13 20 20 C 1.40199 * 126.83586 * 359.97438 * 19 15 14 21 21 C 1.38838 * 120.07294 * 315.84992 * 20 19 15 22 22 C 1.38115 * 119.93547 * 179.74285 * 21 20 19 23 23 C 1.38278 * 120.06396 * 0.53605 * 22 21 20 24 24 C 1.38277 * 120.13556 * 359.73867 * 23 22 21 25 25 C 1.38118 * 120.06740 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.46854 * 56.66196 * 1 2 3 27 27 H 1.08997 * 109.47417 * 176.66742 * 1 2 3 28 28 H 1.09002 * 109.46435 * 296.66555 * 1 2 3 29 29 H 1.09006 * 109.46925 * 239.99945 * 2 1 3 30 30 H 1.08998 * 109.47014 * 120.00674 * 2 1 3 31 31 H 0.96997 * 119.99919 * 179.97438 * 8 7 5 32 32 H 1.00909 * 110.99562 * 130.97570 * 13 3 2 33 33 H 1.09001 * 109.46469 * 35.98477 * 14 13 3 34 34 H 1.09001 * 109.46970 * 155.98183 * 14 13 3 35 35 H 1.08000 * 125.50128 * 180.02562 * 17 16 15 36 36 H 1.08003 * 120.02536 * 0.02562 * 21 20 19 37 37 H 1.07996 * 119.96815 * 180.29322 * 22 21 20 38 38 H 1.08009 * 119.93419 * 179.76382 * 23 22 21 39 39 H 1.08002 * 119.96766 * 180.02562 * 24 23 22 40 40 H 1.07994 * 120.03365 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6049 1.9818 -0.8413 5 6 3.5419 1.4442 -0.1250 6 1 4.1478 1.8885 0.6508 7 6 4.1424 0.8786 -1.2298 8 7 3.4046 0.3371 -2.1743 9 14 6.0039 0.8814 -1.3851 10 1 6.5987 1.5460 -0.1978 11 1 6.4959 -0.5173 -1.4671 12 1 6.3971 1.6172 -2.6135 13 7 1.6525 2.0988 1.2558 14 6 0.5410 3.0347 1.0394 15 6 1.0837 4.3578 0.5642 16 7 1.2083 4.7345 -0.6827 17 6 1.7220 5.9630 -0.7350 18 7 1.9324 6.3886 0.4833 19 7 1.5200 5.3623 1.3488 20 6 1.5563 5.3792 2.7502 21 6 0.4703 4.9149 3.4800 22 6 0.5112 4.9279 4.8605 23 6 1.6280 5.4130 5.5158 24 6 2.7090 5.8813 4.7918 25 6 2.6764 5.8653 3.4111 26 1 -0.3633 0.5648 -0.8586 27 1 -0.3634 -1.0259 -0.0597 28 1 -0.3632 0.4612 0.9184 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8270 -0.0604 -2.9516 32 1 2.4411 2.5655 1.6782 33 1 -0.1351 2.6280 0.2873 34 1 0.0000 3.1786 1.9746 35 1 1.9301 6.5179 -1.6378 36 1 -0.4039 4.5398 2.9685 37 1 -0.3314 4.5626 5.4286 38 1 1.6563 5.4257 6.5955 39 1 3.5801 6.2591 5.3065 40 1 3.5211 6.2308 2.8462 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520835118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:04 Heat of formation + Delta-G solvation = 121.516040 kcal Electronic energy + Delta-G solvation = -22691.199538 eV Core-core repulsion = 19507.947279 eV Total energy + Delta-G solvation = -3183.252259 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.03040 -39.16720 -36.50788 -34.03140 -32.97512 -31.49343 -31.04689 -30.21388 -29.28674 -27.33942 -24.78523 -23.48217 -22.94040 -22.45250 -21.26644 -20.25763 -19.42433 -17.83366 -16.80464 -16.49942 -15.85209 -15.11976 -14.92803 -14.54433 -14.27804 -14.22169 -13.77786 -13.63719 -13.26045 -12.97530 -12.63088 -12.51691 -11.98184 -11.90720 -11.66172 -11.44494 -11.24918 -10.96475 -10.80678 -10.79135 -10.26452 -10.21533 -9.70981 -9.66632 -9.53025 -9.31965 -9.13547 -8.85825 -8.53379 -8.43940 -7.55004 -6.01139 -4.08521 0.85561 1.19149 1.99969 2.43778 3.27339 3.27947 3.35892 3.39162 3.57193 4.40565 4.43003 4.65380 4.73136 4.88492 4.92103 5.06054 5.20086 5.26263 5.36228 5.40442 5.58871 5.74373 5.88692 6.01394 6.16463 6.19024 6.30609 6.36897 6.43723 6.53314 6.62612 6.64784 6.73011 7.03904 7.14930 7.22067 7.41964 7.46600 7.75744 7.92712 8.13298 8.30005 8.39979 8.54115 8.98705 9.56538 11.03676 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.005428 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.430954 B = 5157.215177 C = 5387.183942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C 0.209 3.791 4 H 0.032 0.968 5 C -0.527 4.527 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.890 3.110 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.664 5.664 14 C 0.127 3.873 15 C 0.272 3.728 16 N -0.519 5.519 17 C 0.204 3.796 18 N -0.328 5.328 19 N -0.340 5.340 20 C 0.153 3.847 21 C -0.118 4.118 22 C -0.100 4.100 23 C -0.119 4.119 24 C -0.104 4.104 25 C -0.104 4.104 26 H 0.038 0.962 27 H 0.029 0.971 28 H 0.042 0.958 29 H 0.091 0.909 30 H 0.035 0.965 31 H 0.261 0.739 32 H 0.334 0.666 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.217 0.783 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.140 9.282 12.031 16.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C 0.102 3.898 4 H 0.049 0.951 5 C -0.565 4.565 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.520 5.520 9 Si 0.718 3.282 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.294 5.294 14 C -0.007 4.007 15 C -0.006 4.006 16 N -0.245 5.245 17 C -0.099 4.099 18 N -0.154 5.154 19 N -0.126 5.126 20 C 0.062 3.938 21 C -0.139 4.139 22 C -0.118 4.118 23 C -0.138 4.138 24 C -0.123 4.123 25 C -0.124 4.124 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.233 0.767 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.308 9.160 11.910 16.295 hybrid contribution 1.679 0.695 -0.707 1.950 sum -4.629 9.855 11.203 15.623 Atomic orbital electron populations 1.21814 0.99506 0.98938 0.99818 1.21542 0.91603 0.99317 1.01948 1.19363 0.94449 0.91304 0.84674 0.95069 1.21397 0.91442 1.38346 1.05349 0.92931 1.24844 0.97937 0.95067 0.95589 1.69884 1.34618 1.38195 1.09302 0.86570 0.85965 0.77716 0.77922 1.20027 1.20872 1.21050 1.61185 1.10812 1.27824 1.29530 1.21346 0.96590 0.82022 1.00697 1.26292 0.94725 0.93417 0.86130 1.70665 1.22618 1.12647 1.18571 1.26047 0.96251 0.91767 0.95828 1.78055 1.24968 1.11138 1.01200 1.47616 1.48211 1.12057 1.04675 1.17461 0.95378 1.02416 0.78593 1.21125 0.97051 1.01165 0.94530 1.20991 0.98713 0.99013 0.93117 1.21246 0.93600 0.98660 1.00251 1.21056 0.98888 0.99370 0.92972 1.21086 0.96796 0.99725 0.94782 0.94274 0.95192 0.93883 0.89090 0.94566 0.92945 0.84811 0.87803 0.89775 0.76717 0.84925 0.84937 0.85452 0.85202 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.81 37.16 0.33 -2.51 16 2 C -0.11 -2.50 5.45 -26.73 -0.15 -2.65 16 3 C 0.21 5.14 1.98 -68.87 -0.14 5.00 16 4 H 0.03 0.86 7.41 -51.93 -0.38 0.48 16 5 C -0.53 -14.44 8.60 -34.44 -0.30 -14.73 16 6 H 0.05 1.46 7.37 -52.48 -0.39 1.07 16 7 C 0.07 1.90 5.29 -17.82 -0.09 1.80 16 8 N -0.88 -25.17 11.29 55.43 0.63 -24.54 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.66 -13.60 6.17 -109.22 -0.67 -14.28 16 14 C 0.13 2.22 5.35 -4.98 -0.03 2.20 16 15 C 0.27 5.11 6.92 -155.41 -1.08 4.04 16 16 N -0.52 -10.55 11.19 -11.89 -0.13 -10.68 16 17 C 0.20 3.61 13.03 -91.77 -1.20 2.42 16 18 N -0.33 -5.93 12.58 29.30 0.37 -5.56 16 19 N -0.34 -5.95 3.70 -8.02 -0.03 -5.98 16 20 C 0.15 2.28 6.21 -83.58 -0.52 1.76 16 21 C -0.12 -1.45 8.56 -39.40 -0.34 -1.78 16 22 C -0.10 -0.97 10.04 -39.61 -0.40 -1.37 16 23 C -0.12 -1.10 10.04 -39.55 -0.40 -1.50 16 24 C -0.10 -1.09 10.04 -39.61 -0.40 -1.49 16 25 C -0.10 -1.40 9.89 -39.40 -0.39 -1.79 16 26 H 0.04 0.77 8.11 -51.93 -0.42 0.35 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.77 7.20 -51.93 -0.37 0.40 16 29 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.33 7.14 7.61 -39.29 -0.30 6.84 16 33 H 0.10 1.88 6.65 -51.93 -0.35 1.53 16 34 H 0.08 1.21 5.12 -51.93 -0.27 0.94 16 35 H 0.22 2.91 8.06 -52.49 -0.42 2.48 16 36 H 0.13 1.50 6.28 -52.48 -0.33 1.17 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 332.59 15.07 5.01 5.01 Total: -1.00 -31.40 332.59 -10.14 -41.55 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.21 Total: 8.47 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -5.08 Total: -10.61 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.16 Total: -61.04 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.40 -10.14 -41.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520835118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.063 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds