Wall clock time and date at job start Tue Mar 31 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47316 * 2 1 4 4 H 1.08998 * 109.47447 * 305.04748 * 3 2 1 5 5 C 1.50699 * 109.46909 * 185.04916 * 3 2 1 6 6 H 1.08003 * 119.99633 * 240.00231 * 5 3 2 7 7 C 1.37872 * 120.00377 * 60.00141 * 5 3 2 8 8 N 1.31517 * 119.99921 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00357 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47191 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47128 * 119.99993 * 9 7 5 12 12 H 1.48493 * 109.47376 * 240.00347 * 9 7 5 13 13 N 1.46901 * 109.46638 * 65.04965 * 3 2 1 14 14 C 1.46901 * 110.99974 * 254.92128 * 13 3 2 15 15 C 1.50695 * 109.47280 * 275.98622 * 14 13 3 16 16 N 1.30853 * 125.98836 * 94.19653 * 15 14 13 17 17 C 1.33254 * 109.84853 * 179.97438 * 16 15 14 18 18 N 1.30748 * 109.00057 * 359.97438 * 17 16 15 19 19 N 1.34726 * 125.98711 * 273.88651 * 15 14 13 20 20 C 1.40199 * 126.83586 * 359.97438 * 19 15 14 21 21 C 1.38838 * 120.07294 * 315.84992 * 20 19 15 22 22 C 1.38115 * 119.93547 * 179.74285 * 21 20 19 23 23 C 1.38278 * 120.06396 * 0.53605 * 22 21 20 24 24 C 1.38277 * 120.13556 * 359.73867 * 23 22 21 25 25 C 1.38118 * 120.06740 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.46854 * 56.66196 * 1 2 3 27 27 H 1.08997 * 109.47417 * 176.66742 * 1 2 3 28 28 H 1.09002 * 109.46435 * 296.66555 * 1 2 3 29 29 H 1.09006 * 109.46925 * 239.99945 * 2 1 3 30 30 H 1.08998 * 109.47014 * 120.00674 * 2 1 3 31 31 H 0.96997 * 119.99919 * 179.97438 * 8 7 5 32 32 H 1.00909 * 110.99562 * 130.97570 * 13 3 2 33 33 H 1.09001 * 109.46469 * 35.98477 * 14 13 3 34 34 H 1.09001 * 109.46970 * 155.98183 * 14 13 3 35 35 H 1.08000 * 125.50128 * 180.02562 * 17 16 15 36 36 H 1.08003 * 120.02536 * 0.02562 * 21 20 19 37 37 H 1.07996 * 119.96815 * 180.29322 * 22 21 20 38 38 H 1.08009 * 119.93419 * 179.76382 * 23 22 21 39 39 H 1.08002 * 119.96766 * 180.02562 * 24 23 22 40 40 H 1.07994 * 120.03365 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6049 1.9818 -0.8413 5 6 3.5419 1.4442 -0.1250 6 1 4.1478 1.8885 0.6508 7 6 4.1424 0.8786 -1.2298 8 7 3.4046 0.3371 -2.1743 9 14 6.0039 0.8814 -1.3851 10 1 6.5987 1.5460 -0.1978 11 1 6.4959 -0.5173 -1.4671 12 1 6.3971 1.6172 -2.6135 13 7 1.6525 2.0988 1.2558 14 6 0.5410 3.0347 1.0394 15 6 1.0837 4.3578 0.5642 16 7 1.2083 4.7345 -0.6827 17 6 1.7220 5.9630 -0.7350 18 7 1.9324 6.3886 0.4833 19 7 1.5200 5.3623 1.3488 20 6 1.5563 5.3792 2.7502 21 6 0.4703 4.9149 3.4800 22 6 0.5112 4.9279 4.8605 23 6 1.6280 5.4130 5.5158 24 6 2.7090 5.8813 4.7918 25 6 2.6764 5.8653 3.4111 26 1 -0.3633 0.5648 -0.8586 27 1 -0.3634 -1.0259 -0.0597 28 1 -0.3632 0.4612 0.9184 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8270 -0.0604 -2.9516 32 1 2.4411 2.5655 1.6782 33 1 -0.1351 2.6280 0.2873 34 1 0.0000 3.1786 1.9746 35 1 1.9301 6.5179 -1.6378 36 1 -0.4039 4.5398 2.9685 37 1 -0.3314 4.5626 5.4286 38 1 1.6563 5.4257 6.5955 39 1 3.5801 6.2591 5.3065 40 1 3.5211 6.2308 2.8462 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520835118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:04 Heat of formation + Delta-G solvation = 103.286970 kcal Electronic energy + Delta-G solvation = -22691.990010 eV Core-core repulsion = 19507.947279 eV Total energy + Delta-G solvation = -3184.042731 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.37744 -40.08674 -38.26153 -35.27506 -34.73193 -33.22680 -32.04102 -31.69367 -30.39144 -29.12449 -26.47610 -24.76955 -24.30665 -23.74513 -22.46449 -21.57832 -21.24059 -19.08233 -18.71215 -17.43658 -17.16002 -16.82581 -16.39406 -15.91139 -15.68573 -15.45962 -15.20118 -14.79578 -14.52869 -14.38038 -14.15068 -13.95839 -13.51605 -13.36905 -13.11968 -12.86365 -12.77128 -12.71879 -12.50359 -12.20462 -12.13959 -11.54243 -11.44775 -11.27471 -11.10989 -10.89387 -10.77331 -10.51440 -10.00703 -9.56161 -9.30792 -8.12639 -6.26754 -0.18045 0.33445 0.75692 1.21592 1.33464 1.35512 1.45192 1.85983 2.37165 2.69082 3.08892 3.14200 3.52117 3.62156 3.83585 3.87441 3.95087 4.19717 4.38154 4.42408 4.52337 4.53485 4.66566 4.70922 4.78547 4.89765 4.99891 5.09342 5.18027 5.32608 5.38055 5.40488 5.41696 5.49269 5.53059 5.65182 5.66851 5.74006 5.94768 6.07257 6.24653 6.32213 6.62095 6.93122 7.01672 7.41463 8.90680 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.005428 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.430954 B = 5157.215177 C = 5387.183942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 C 0.221 3.779 4 H -0.003 1.003 5 C -0.543 4.543 6 H 0.043 0.957 7 C 0.022 3.978 8 N -0.906 5.906 9 Si 0.948 3.052 10 H -0.274 1.274 11 H -0.274 1.274 12 H -0.284 1.284 13 N -0.653 5.653 14 C 0.132 3.868 15 C 0.258 3.742 16 N -0.558 5.558 17 C 0.194 3.806 18 N -0.342 5.342 19 N -0.332 5.332 20 C 0.111 3.889 21 C -0.126 4.126 22 C -0.093 4.093 23 C -0.107 4.107 24 C -0.103 4.103 25 C -0.125 4.125 26 H 0.032 0.968 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.031 0.969 31 H 0.262 0.738 32 H 0.328 0.672 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.246 0.754 36 H 0.139 0.861 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.687 9.464 14.821 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.140 4.140 3 C 0.113 3.887 4 H 0.015 0.985 5 C -0.582 4.582 6 H 0.061 0.939 7 C -0.178 4.178 8 N -0.545 5.545 9 Si 0.774 3.226 10 H -0.199 1.199 11 H -0.199 1.199 12 H -0.210 1.210 13 N -0.281 5.281 14 C 0.000 4.000 15 C -0.019 4.019 16 N -0.286 5.286 17 C -0.108 4.108 18 N -0.168 5.168 19 N -0.117 5.117 20 C 0.020 3.980 21 C -0.146 4.146 22 C -0.111 4.111 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.145 4.145 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.262 0.738 36 H 0.156 0.844 37 H 0.185 0.815 38 H 0.183 0.817 39 H 0.172 0.828 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.864 9.350 14.734 18.752 hybrid contribution 1.838 0.719 -1.432 2.438 sum -5.027 10.068 13.302 17.423 Atomic orbital electron populations 1.21673 0.96309 1.00317 1.00567 1.21382 0.94466 0.98144 1.00035 1.19063 0.92738 0.91781 0.85161 0.98502 1.21714 0.93165 1.38116 1.05200 0.93895 1.25548 1.01878 0.94922 0.95449 1.70006 1.36084 1.38726 1.09642 0.85674 0.81313 0.77982 0.77646 1.19904 1.19915 1.20990 1.61102 1.11020 1.28777 1.27231 1.21414 0.95355 0.80998 1.02281 1.26288 0.95391 0.94024 0.86212 1.70621 1.24006 1.14027 1.19928 1.26665 0.95897 0.91390 0.96873 1.77978 1.25309 1.11985 1.01504 1.47719 1.47000 1.11231 1.05769 1.17923 0.97303 1.05408 0.77351 1.21324 0.96406 1.01121 0.95722 1.21451 0.99920 0.97654 0.92074 1.21738 0.92377 0.96227 1.02117 1.21390 1.00384 0.98722 0.91635 1.21136 0.96200 1.00857 0.96273 0.94916 0.93312 0.91848 0.92311 0.95026 0.92906 0.85440 0.88413 0.86121 0.73782 0.84372 0.81456 0.81662 0.82759 0.87058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 8.81 71.98 0.63 -4.43 16 2 C -0.10 -4.86 5.45 30.60 0.17 -4.70 16 3 C 0.22 11.07 1.98 44.17 0.09 11.16 16 4 H 0.00 -0.16 7.41 -2.39 -0.02 -0.18 16 5 C -0.54 -30.47 8.60 25.60 0.22 -30.25 16 6 H 0.04 2.43 7.37 -2.91 -0.02 2.41 16 7 C 0.02 1.26 5.29 84.65 0.45 1.71 16 8 N -0.91 -52.91 11.29 21.45 0.24 -52.67 16 9 Si 0.95 45.03 29.54 68.60 2.03 47.06 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 13 N -0.65 -26.76 6.17 -499.47 -3.08 -29.84 16 14 C 0.13 4.60 5.35 85.56 0.46 5.05 16 15 C 0.26 9.89 6.92 138.12 0.96 10.85 16 16 N -0.56 -23.45 11.19 -191.53 -2.14 -25.59 16 17 C 0.19 7.07 13.03 180.75 2.35 9.42 16 18 N -0.34 -12.67 12.58 -61.22 -0.77 -13.44 16 19 N -0.33 -11.79 3.70 -179.30 -0.66 -12.46 16 20 C 0.11 3.24 6.21 38.09 0.24 3.48 16 21 C -0.13 -2.81 8.56 22.38 0.19 -2.62 16 22 C -0.09 -1.44 10.04 22.25 0.22 -1.22 16 23 C -0.11 -1.52 10.04 22.29 0.22 -1.29 16 24 C -0.10 -1.90 10.04 22.25 0.22 -1.67 16 25 C -0.12 -3.32 9.89 22.39 0.22 -3.10 16 26 H 0.03 1.28 8.11 -2.39 -0.02 1.26 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 28 H 0.06 2.16 7.20 -2.39 -0.02 2.15 16 29 H 0.06 3.21 5.95 -2.38 -0.01 3.19 16 30 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.26 14.54 8.31 -92.71 -0.77 13.76 16 32 H 0.33 14.19 7.61 -89.69 -0.68 13.51 16 33 H 0.10 3.53 6.65 -2.39 -0.02 3.52 16 34 H 0.12 3.26 5.12 -2.39 -0.01 3.25 16 35 H 0.25 6.74 8.06 -2.91 -0.02 6.71 16 36 H 0.14 2.82 6.28 -2.91 -0.02 2.80 16 37 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 39 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.11 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -70.53 332.59 2.63 -67.90 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.38 Total: 26.64 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 6.64 Total: -7.60 kcal Atomic # 7 Polarization: -127.58 SS G_CDS: -6.42 Total: -134.00 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -70.53 2.63 -67.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520835118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.189 kcal (2) G-P(sol) polarization free energy of solvation -70.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds