Wall clock time and date at job start Tue Mar 31 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30836 * 125.90253 * 2 1 4 4 N 1.40075 * 108.21115 * 179.97438 * 3 2 1 5 5 C 1.46504 * 126.04260 * 179.97438 * 4 3 2 6 6 C 1.34957 * 107.92432 * 359.76413 * 4 3 2 7 7 C 1.50698 * 126.12699 * 180.23916 * 6 4 3 8 8 C 1.35315 * 107.74422 * 0.38623 * 6 4 3 9 9 C 1.50693 * 126.04068 * 179.87841 * 8 6 4 10 10 N 1.46503 * 109.47010 * 269.71067 * 9 8 6 11 11 C 1.39081 * 120.00068 * 179.97438 * 10 9 8 12 12 C 1.38745 * 119.65876 * 0.02562 * 11 10 9 13 13 C 1.40772 * 118.66983 * 179.69756 * 12 11 10 14 14 C 1.41553 * 120.99050 * 180.25109 * 13 12 11 15 15 H 1.07998 * 120.00380 * 330.82953 * 14 13 12 16 16 C 1.40031 * 120.00053 * 150.83395 * 14 13 12 17 17 N 1.30741 * 120.00262 * 161.63847 * 16 14 13 18 18 Si 1.86804 * 119.99597 * 341.64176 * 16 14 13 19 19 H 1.48498 * 109.47226 * 95.39517 * 18 16 14 20 20 H 1.48496 * 109.46645 * 215.39418 * 18 16 14 21 21 H 1.48501 * 109.46834 * 335.39154 * 18 16 14 22 22 C 1.41181 * 118.01372 * 0.27367 * 13 12 11 23 23 C 1.36556 * 119.14945 * 359.97438 * 22 13 12 24 24 N 1.32098 * 121.26696 * 0.02562 * 23 22 13 25 25 H 1.09002 * 109.46617 * 270.01724 * 1 2 3 26 26 H 1.09000 * 109.47046 * 30.01814 * 1 2 3 27 27 H 1.09002 * 109.47215 * 150.02290 * 1 2 3 28 28 H 1.09003 * 109.46717 * 89.97820 * 5 4 3 29 29 H 1.09000 * 109.47387 * 209.97796 * 5 4 3 30 30 H 1.09000 * 109.46813 * 329.98397 * 5 4 3 31 31 H 1.08997 * 109.47074 * 270.16907 * 7 6 4 32 32 H 1.09003 * 109.47283 * 30.17422 * 7 6 4 33 33 H 1.09007 * 109.46836 * 150.17434 * 7 6 4 34 34 H 1.09005 * 109.47230 * 149.71444 * 9 8 6 35 35 H 1.09003 * 109.47239 * 29.71141 * 9 8 6 36 36 H 0.97002 * 120.00153 * 0.02562 * 10 9 8 37 37 H 1.08001 * 120.66348 * 359.96577 * 12 11 10 38 38 H 0.96998 * 120.00124 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.42859 * 180.02562 * 22 13 12 40 40 H 1.08000 * 119.36870 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7900 1.5007 0.0003 6 6 3.6142 -0.7154 0.0062 7 6 4.8350 -1.5989 0.0139 8 6 2.3272 -1.1331 0.0004 9 6 1.8599 -2.5658 0.0011 10 7 1.7091 -3.0308 -1.3800 11 6 1.2857 -4.3311 -1.6336 12 6 1.0077 -5.1817 -0.5733 13 6 0.5744 -6.4914 -0.8539 14 6 0.2721 -7.3984 0.1900 15 1 0.7780 -7.3158 1.1406 16 6 -0.6827 -8.4029 -0.0099 17 7 -0.7149 -9.4416 0.7835 18 14 -1.9106 -8.2590 -1.4103 19 1 -1.4064 -9.0075 -2.5896 20 1 -3.2153 -8.8261 -0.9848 21 1 -2.0860 -6.8288 -1.7697 22 6 0.4509 -6.8734 -2.2074 23 6 0.7525 -5.9680 -3.1842 24 7 1.1565 -4.7463 -2.8856 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3634 -0.8902 -0.5135 28 1 5.0824 1.7166 1.0279 29 1 5.6096 0.9976 -0.5127 30 1 4.5566 2.4327 -0.5145 31 1 5.1345 -1.8138 -1.0118 32 1 5.6486 -1.0901 0.5310 33 1 4.6049 -2.5321 0.5282 34 1 0.9009 -2.6350 0.5145 35 1 2.5932 -3.1869 0.5156 36 1 1.9052 -2.4321 -2.1175 37 1 1.1172 -4.8444 0.4468 38 1 -1.3761 -10.1376 0.6448 39 1 0.1214 -7.8686 -2.4670 40 1 0.6597 -6.2565 -4.2208 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546634335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:17 Heat of formation + Delta-G solvation = 100.125134 kcal Electronic energy + Delta-G solvation = -21798.956861 eV Core-core repulsion = 18614.777022 eV Total energy + Delta-G solvation = -3184.179839 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.44885 -38.63549 -35.52759 -34.18536 -33.75024 -32.15251 -31.16465 -29.66786 -28.96950 -27.20965 -25.94514 -25.77033 -24.10079 -21.33129 -21.01186 -19.63944 -19.45843 -17.68252 -16.62475 -16.00080 -15.84696 -15.42696 -14.71902 -14.41991 -14.20444 -13.89033 -13.65104 -13.43213 -13.32922 -13.29399 -13.05457 -12.81034 -12.74894 -12.58411 -12.12369 -12.00808 -11.97644 -11.64934 -11.40293 -10.96735 -10.72705 -10.55651 -10.46738 -9.73320 -9.34279 -9.10124 -9.01475 -8.42153 -8.13681 -8.00072 -6.96816 -6.62647 -4.61392 1.74901 2.38326 2.60241 2.68005 2.87835 3.16090 3.25704 3.37559 4.00909 4.23630 4.35113 4.51729 4.66866 4.84304 4.88867 5.01031 5.13255 5.25823 5.33148 5.36739 5.52931 5.60820 5.66410 5.70676 5.85816 5.94440 6.04391 6.10666 6.29864 6.51783 6.61892 6.66186 6.76078 6.81000 6.93731 7.16078 7.33272 7.68336 7.70510 7.83946 8.07834 8.31470 8.59264 8.66973 8.81509 9.58645 10.05096 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.026540 B = 0.003631 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.741818 B = 7709.696239 C = 7761.311652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.095 3.905 3 N -0.304 5.304 4 N -0.379 5.379 5 C 0.103 3.897 6 C 0.104 3.896 7 C -0.094 4.094 8 C -0.249 4.249 9 C 0.219 3.781 10 N -0.736 5.736 11 C 0.407 3.593 12 C -0.325 4.325 13 C 0.139 3.861 14 C -0.444 4.444 15 H 0.091 0.909 16 C 0.088 3.912 17 N -0.804 5.804 18 Si 0.916 3.084 19 H -0.269 1.269 20 H -0.292 1.292 21 H -0.246 1.246 22 C -0.318 4.318 23 C 0.149 3.851 24 N -0.623 5.623 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.390 0.610 37 H 0.105 0.895 38 H 0.286 0.714 39 H 0.104 0.896 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.447 15.643 -0.260 17.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.072 4.072 3 N -0.126 5.126 4 N -0.161 5.161 5 C -0.038 4.038 6 C -0.024 4.024 7 C -0.153 4.153 8 C -0.260 4.260 9 C 0.094 3.906 10 N -0.371 5.371 11 C 0.177 3.823 12 C -0.352 4.352 13 C 0.131 3.869 14 C -0.474 4.474 15 H 0.109 0.891 16 C -0.132 4.132 17 N -0.428 5.428 18 Si 0.743 3.257 19 H -0.195 1.195 20 H -0.220 1.220 21 H -0.169 1.169 22 C -0.343 4.343 23 C -0.003 4.003 24 N -0.346 5.346 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.224 0.776 37 H 0.123 0.877 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.745 17.374 -0.589 19.032 hybrid contribution -0.553 -1.311 -0.059 1.424 sum 7.192 16.064 -0.648 17.612 Atomic orbital electron populations 1.20234 0.86539 1.03632 1.03087 1.22254 0.96916 0.90083 0.97905 1.77306 0.86093 1.22494 1.26726 1.48303 1.05578 1.04107 1.58069 1.21790 0.83996 0.94906 1.03132 1.20936 0.97072 0.84408 0.99974 1.20508 0.92548 0.98523 1.03675 1.19787 0.91227 0.96232 1.18788 1.19224 0.99948 0.87510 0.83956 1.44304 1.76015 1.10818 1.05988 1.18038 0.89960 0.84588 0.89677 1.21116 1.22327 0.94928 0.96833 1.17679 0.86580 0.90708 0.91914 1.19467 1.19538 1.08161 1.00210 0.89095 1.26171 0.97952 0.92489 0.96570 1.69661 1.31043 1.06051 1.36088 0.86244 0.78027 0.81216 0.80217 1.19511 1.21981 1.16876 1.21500 1.17817 1.00653 0.94376 1.21294 0.93178 0.88222 0.97621 1.66840 1.28922 1.18976 1.19849 0.90402 0.91080 0.89788 0.90964 0.89620 0.89385 0.89922 0.91313 0.89052 0.91880 0.92270 0.77605 0.87738 0.90366 0.87864 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.12 36.01 0.36 -0.54 16 2 C 0.10 1.34 7.22 -82.40 -0.59 0.74 16 3 N -0.30 -4.38 12.57 33.67 0.42 -3.96 16 4 N -0.38 -4.57 4.01 -63.88 -0.26 -4.83 16 5 C 0.10 0.75 11.09 59.85 0.66 1.42 16 6 C 0.10 1.29 6.93 -82.26 -0.57 0.72 16 7 C -0.09 -0.88 9.68 36.00 0.35 -0.53 16 8 C -0.25 -3.49 5.47 -105.05 -0.57 -4.06 16 9 C 0.22 3.38 4.83 -5.20 -0.03 3.35 16 10 N -0.74 -13.18 5.72 -61.65 -0.35 -13.53 16 11 C 0.41 9.00 7.65 -154.97 -1.19 7.82 16 12 C -0.33 -7.71 9.12 -38.44 -0.35 -8.06 16 13 C 0.14 3.59 5.13 -106.56 -0.55 3.05 16 14 C -0.44 -12.00 9.63 -37.65 -0.36 -12.37 16 15 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 16 C 0.09 2.31 5.42 -17.34 -0.09 2.21 16 17 N -0.80 -21.24 13.92 55.55 0.77 -20.46 16 18 Si 0.92 20.94 24.54 -169.99 -4.17 16.77 16 19 H -0.27 -5.94 6.70 56.52 0.38 -5.56 16 20 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.25 -5.84 6.85 56.52 0.39 -5.45 16 22 C -0.32 -7.82 7.24 -39.07 -0.28 -8.10 16 23 C 0.15 3.41 11.10 -18.04 -0.20 3.21 16 24 N -0.62 -14.39 10.37 -12.82 -0.13 -14.52 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.05 7.92 -51.93 -0.41 0.64 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.44 7.67 -51.93 -0.40 0.04 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.48 7.74 -51.93 -0.40 0.07 16 33 H 0.09 0.90 7.14 -51.93 -0.37 0.53 16 34 H 0.06 1.00 7.70 -51.93 -0.40 0.60 16 35 H 0.06 0.91 6.92 -51.93 -0.36 0.55 16 36 H 0.39 6.79 8.59 -40.82 -0.35 6.44 16 37 H 0.10 2.34 6.71 -52.49 -0.35 1.98 16 38 H 0.29 6.82 8.29 -40.82 -0.34 6.48 16 39 H 0.10 2.49 4.76 -52.48 -0.25 2.24 16 40 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -31.22 332.71 -7.54 -38.76 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.42 Total: 7.90 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -3.41 Total: -11.14 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.45 Total: -57.30 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.17 Total: 16.77 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.22 -7.54 -38.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546634335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.884 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds