Wall clock time and date at job start Tue Mar 31 2020 05:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30836 * 125.90253 * 2 1 4 4 N 1.40075 * 108.21115 * 179.97438 * 3 2 1 5 5 C 1.46504 * 126.04260 * 179.97438 * 4 3 2 6 6 C 1.34957 * 107.92432 * 359.76413 * 4 3 2 7 7 C 1.50698 * 126.12699 * 180.23916 * 6 4 3 8 8 C 1.35315 * 107.74422 * 0.38623 * 6 4 3 9 9 C 1.50693 * 126.04068 * 179.87841 * 8 6 4 10 10 N 1.46503 * 109.47010 * 269.71067 * 9 8 6 11 11 C 1.39081 * 120.00068 * 179.97438 * 10 9 8 12 12 C 1.38745 * 119.65876 * 0.02562 * 11 10 9 13 13 C 1.40772 * 118.66983 * 179.69756 * 12 11 10 14 14 C 1.41553 * 120.99050 * 180.25109 * 13 12 11 15 15 H 1.07998 * 120.00380 * 330.82953 * 14 13 12 16 16 C 1.40031 * 120.00053 * 150.83395 * 14 13 12 17 17 N 1.30741 * 120.00262 * 161.63847 * 16 14 13 18 18 Si 1.86804 * 119.99597 * 341.64176 * 16 14 13 19 19 H 1.48498 * 109.47226 * 95.39517 * 18 16 14 20 20 H 1.48496 * 109.46645 * 215.39418 * 18 16 14 21 21 H 1.48501 * 109.46834 * 335.39154 * 18 16 14 22 22 C 1.41181 * 118.01372 * 0.27367 * 13 12 11 23 23 C 1.36556 * 119.14945 * 359.97438 * 22 13 12 24 24 N 1.32098 * 121.26696 * 0.02562 * 23 22 13 25 25 H 1.09002 * 109.46617 * 270.01724 * 1 2 3 26 26 H 1.09000 * 109.47046 * 30.01814 * 1 2 3 27 27 H 1.09002 * 109.47215 * 150.02290 * 1 2 3 28 28 H 1.09003 * 109.46717 * 89.97820 * 5 4 3 29 29 H 1.09000 * 109.47387 * 209.97796 * 5 4 3 30 30 H 1.09000 * 109.46813 * 329.98397 * 5 4 3 31 31 H 1.08997 * 109.47074 * 270.16907 * 7 6 4 32 32 H 1.09003 * 109.47283 * 30.17422 * 7 6 4 33 33 H 1.09007 * 109.46836 * 150.17434 * 7 6 4 34 34 H 1.09005 * 109.47230 * 149.71444 * 9 8 6 35 35 H 1.09003 * 109.47239 * 29.71141 * 9 8 6 36 36 H 0.97002 * 120.00153 * 0.02562 * 10 9 8 37 37 H 1.08001 * 120.66348 * 359.96577 * 12 11 10 38 38 H 0.96998 * 120.00124 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.42859 * 180.02562 * 22 13 12 40 40 H 1.08000 * 119.36870 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7900 1.5007 0.0003 6 6 3.6142 -0.7154 0.0062 7 6 4.8350 -1.5989 0.0139 8 6 2.3272 -1.1331 0.0004 9 6 1.8599 -2.5658 0.0011 10 7 1.7091 -3.0308 -1.3800 11 6 1.2857 -4.3311 -1.6336 12 6 1.0077 -5.1817 -0.5733 13 6 0.5744 -6.4914 -0.8539 14 6 0.2721 -7.3984 0.1900 15 1 0.7780 -7.3158 1.1406 16 6 -0.6827 -8.4029 -0.0099 17 7 -0.7149 -9.4416 0.7835 18 14 -1.9106 -8.2590 -1.4103 19 1 -1.4064 -9.0075 -2.5896 20 1 -3.2153 -8.8261 -0.9848 21 1 -2.0860 -6.8288 -1.7697 22 6 0.4509 -6.8734 -2.2074 23 6 0.7525 -5.9680 -3.1842 24 7 1.1565 -4.7463 -2.8856 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3634 -0.8902 -0.5135 28 1 5.0824 1.7166 1.0279 29 1 5.6096 0.9976 -0.5127 30 1 4.5566 2.4327 -0.5145 31 1 5.1345 -1.8138 -1.0118 32 1 5.6486 -1.0901 0.5310 33 1 4.6049 -2.5321 0.5282 34 1 0.9009 -2.6350 0.5145 35 1 2.5932 -3.1869 0.5156 36 1 1.9052 -2.4321 -2.1175 37 1 1.1172 -4.8444 0.4468 38 1 -1.3761 -10.1376 0.6448 39 1 0.1214 -7.8686 -2.4670 40 1 0.6597 -6.2565 -4.2208 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546634335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:16 Heat of formation + Delta-G solvation = 80.178764 kcal Electronic energy + Delta-G solvation = -21799.821801 eV Core-core repulsion = 18614.777022 eV Total energy + Delta-G solvation = -3185.044778 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.42468 -40.43803 -37.00130 -35.72844 -35.02912 -33.37360 -32.94775 -30.63561 -30.29994 -28.45420 -27.79915 -26.81130 -25.23889 -23.05128 -22.83644 -20.66271 -20.43608 -19.55349 -18.01955 -17.41877 -17.02524 -16.87973 -16.30150 -16.05330 -15.55674 -15.19541 -14.89313 -14.75935 -14.73648 -14.36241 -14.33796 -13.99638 -13.83673 -13.59336 -13.40344 -13.14108 -12.90564 -12.83761 -12.75947 -12.72191 -12.64050 -12.36711 -11.64248 -11.52187 -11.20759 -10.67241 -10.05493 -10.04055 -9.86822 -9.43194 -8.92534 -8.30792 -6.64557 0.79110 0.82282 1.01398 1.31715 1.45930 1.50789 1.54184 1.58199 2.16161 2.72070 2.77053 3.49322 3.64850 3.67310 4.03746 4.13998 4.20114 4.34182 4.35373 4.39223 4.56961 4.59608 4.65902 4.67056 4.74013 4.75463 4.82342 4.91784 4.95260 5.00417 5.04618 5.11466 5.23484 5.31762 5.47041 5.65588 5.81232 5.98080 6.08578 6.29159 6.39768 6.69401 6.69687 6.81591 7.01021 7.77852 8.14967 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.026540 B = 0.003631 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.741818 B = 7709.696239 C = 7761.311652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.083 3.917 3 N -0.330 5.330 4 N -0.377 5.377 5 C 0.091 3.909 6 C 0.112 3.888 7 C -0.093 4.093 8 C -0.274 4.274 9 C 0.225 3.775 10 N -0.720 5.720 11 C 0.411 3.589 12 C -0.339 4.339 13 C 0.126 3.874 14 C -0.477 4.477 15 H 0.060 0.940 16 C 0.056 3.944 17 N -0.838 5.838 18 Si 0.970 3.030 19 H -0.252 1.252 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.336 4.336 23 C 0.153 3.847 24 N -0.626 5.626 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.396 0.604 37 H 0.108 0.892 38 H 0.297 0.703 39 H 0.107 0.893 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.298 17.055 -1.704 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 N -0.153 5.153 4 N -0.158 5.158 5 C -0.048 4.048 6 C -0.018 4.018 7 C -0.151 4.151 8 C -0.286 4.286 9 C 0.100 3.900 10 N -0.354 5.354 11 C 0.179 3.821 12 C -0.366 4.366 13 C 0.118 3.882 14 C -0.508 4.508 15 H 0.078 0.922 16 C -0.161 4.161 17 N -0.464 5.464 18 Si 0.793 3.207 19 H -0.177 1.177 20 H -0.203 1.203 21 H -0.185 1.185 22 C -0.361 4.361 23 C 0.000 4.000 24 N -0.349 5.349 25 H 0.106 0.894 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.130 0.870 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.230 0.770 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.124 0.876 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.622 18.829 -2.011 20.807 hybrid contribution -0.650 -1.552 0.402 1.730 sum 7.971 17.277 -1.609 19.095 Atomic orbital electron populations 1.20244 0.85734 1.03516 1.03755 1.22529 0.97756 0.90117 0.97854 1.77248 0.87378 1.22962 1.27725 1.48687 1.05877 1.04545 1.56696 1.22207 0.82999 0.94874 1.04747 1.21333 0.97446 0.84971 0.98067 1.20607 0.92171 0.97931 1.04400 1.19680 0.92295 0.95185 1.21424 1.19194 0.99701 0.88724 0.82354 1.44407 1.74353 1.09211 1.07381 1.18213 0.88952 0.85796 0.89103 1.21226 1.22853 0.94831 0.97669 1.17861 0.86762 0.91194 0.92418 1.19463 1.21326 1.10246 0.99761 0.92160 1.26809 0.98804 0.91877 0.98631 1.69671 1.32261 1.06832 1.37609 0.85433 0.76671 0.80342 0.78239 1.17744 1.20339 1.18484 1.21599 1.19003 1.01384 0.94098 1.21844 0.91457 0.87635 0.99067 1.67013 1.28800 1.19171 1.19938 0.89369 0.90224 0.90746 0.89316 0.86991 0.88845 0.89248 0.88344 0.89744 0.92574 0.92170 0.76962 0.87417 0.89273 0.87563 0.82335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.72 10.12 71.24 0.72 -1.00 16 2 C 0.08 2.28 7.22 43.10 0.31 2.60 16 3 N -0.33 -9.10 12.57 -47.38 -0.60 -9.70 16 4 N -0.38 -8.28 4.01 -356.01 -1.43 -9.71 16 5 C 0.09 1.06 11.09 127.77 1.42 2.47 16 6 C 0.11 2.54 6.93 41.40 0.29 2.83 16 7 C -0.09 -1.50 9.68 71.24 0.69 -0.81 16 8 C -0.27 -7.42 5.47 -20.14 -0.11 -7.53 16 9 C 0.23 6.83 4.83 85.63 0.41 7.24 16 10 N -0.72 -24.99 5.72 -348.96 -2.00 -26.99 16 11 C 0.41 17.80 7.65 132.90 1.02 18.81 16 12 C -0.34 -16.19 9.12 23.01 0.21 -15.98 16 13 C 0.13 6.56 5.13 -21.12 -0.11 6.45 16 14 C -0.48 -26.80 9.63 23.52 0.23 -26.57 16 15 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 16 C 0.06 2.96 5.42 85.29 0.46 3.42 16 17 N -0.84 -45.14 13.92 21.84 0.30 -44.84 16 18 Si 0.97 42.81 24.54 68.60 1.68 44.49 16 19 H -0.25 -10.39 6.70 99.48 0.67 -9.73 16 20 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 21 H -0.26 -12.07 6.85 99.48 0.68 -11.39 16 22 C -0.34 -16.18 7.24 22.60 0.16 -16.02 16 23 C 0.15 6.66 11.10 84.26 0.94 7.59 16 24 N -0.63 -27.72 10.37 -194.47 -2.02 -29.73 16 25 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.84 7.92 -2.39 -0.02 1.82 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.11 0.71 7.67 -2.39 -0.02 0.69 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.00 7.74 -2.39 -0.02 0.98 16 33 H 0.08 1.51 7.14 -2.38 -0.02 1.50 16 34 H 0.06 1.79 7.70 -2.38 -0.02 1.77 16 35 H 0.06 1.83 6.92 -2.39 -0.02 1.81 16 36 H 0.40 13.15 8.59 -92.71 -0.80 12.35 16 37 H 0.11 4.94 6.71 -2.91 -0.02 4.93 16 38 H 0.30 14.25 8.29 -92.71 -0.77 13.48 16 39 H 0.11 4.99 4.76 -2.91 -0.01 4.97 16 40 H 0.16 5.65 8.06 -2.91 -0.02 5.63 16 Total: -1.00 -67.49 332.71 2.79 -64.70 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.21 Total: 28.25 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 6.64 Total: -16.48 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -5.73 Total: -120.96 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.68 Total: 44.49 kcal Total: -67.49 2.79 -64.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546634335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.879 kcal (2) G-P(sol) polarization free energy of solvation -67.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds