Wall clock time and date at job start Tue Mar 31 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47126 * 2 1 4 4 H 1.09002 * 109.47158 * 305.59990 * 3 2 1 5 5 C 1.50699 * 109.46705 * 185.60467 * 3 2 1 6 6 H 1.07998 * 120.00128 * 245.40106 * 5 3 2 7 7 C 1.37881 * 120.00268 * 65.40486 * 5 3 2 8 8 N 1.31518 * 120.00176 * 197.21526 * 7 5 3 9 9 Si 1.86801 * 119.99714 * 17.21569 * 7 5 3 10 10 H 1.48500 * 109.46910 * 86.80752 * 9 7 5 11 11 H 1.48499 * 109.47045 * 206.80439 * 9 7 5 12 12 H 1.48496 * 109.47046 * 326.80769 * 9 7 5 13 13 N 1.46895 * 109.47390 * 65.60563 * 3 2 1 14 14 C 1.46902 * 110.99983 * 251.61892 * 13 3 2 15 15 C 1.50694 * 109.47258 * 183.52162 * 14 13 3 16 16 C 1.35369 * 126.73313 * 94.71072 * 15 14 13 17 17 N 1.36119 * 106.05338 * 179.85607 * 16 15 14 18 18 C 1.40245 * 125.94066 * 180.18569 * 17 16 15 19 19 C 1.38818 * 120.06714 * 0.02562 * 18 17 16 20 20 C 1.38129 * 119.93382 * 179.74729 * 19 18 17 21 21 C 1.38278 * 120.06294 * 0.55233 * 20 19 18 22 22 C 1.38280 * 120.13240 * 359.70239 * 21 20 19 23 23 C 1.38121 * 120.06339 * 0.02562 * 22 21 20 24 24 N 1.28724 * 108.11166 * 0.41449 * 17 16 15 25 25 N 1.28605 * 110.23653 * 359.73846 * 24 17 16 26 26 H 1.09000 * 109.47584 * 305.16351 * 1 2 3 27 27 H 1.09002 * 109.47677 * 185.16200 * 1 2 3 28 28 H 1.09002 * 109.46974 * 65.16704 * 1 2 3 29 29 H 1.09003 * 109.46732 * 119.99578 * 2 1 3 30 30 H 1.09004 * 109.47453 * 239.99457 * 2 1 3 31 31 H 0.96995 * 120.00064 * 180.02562 * 8 7 5 32 32 H 1.00908 * 110.99894 * 15.56806 * 13 3 2 33 33 H 1.08996 * 109.46754 * 303.52564 * 14 13 3 34 34 H 1.09006 * 109.47105 * 63.52302 * 14 13 3 35 35 H 1.08005 * 126.96999 * 359.96656 * 16 15 14 36 36 H 1.07999 * 120.03444 * 0.02859 * 19 18 17 37 37 H 1.07992 * 119.96934 * 180.28091 * 20 19 18 38 38 H 1.08003 * 119.93091 * 179.72504 * 21 20 19 39 39 H 1.07993 * 119.96872 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.03288 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9845 -0.8356 5 6 3.5405 1.4447 -0.1388 6 1 4.1572 1.8069 0.6705 7 6 4.1263 0.9843 -1.2989 8 7 5.4022 0.6654 -1.3097 9 14 3.1077 0.8136 -2.8554 10 1 3.0999 2.1064 -3.5862 11 1 3.6974 -0.2400 -3.7199 12 1 1.7160 0.4389 -2.4976 13 7 1.6639 2.0949 1.2613 14 6 0.6037 3.0883 1.0445 15 6 0.3056 3.7960 2.3411 16 6 0.8302 4.9709 2.7614 17 7 0.2724 5.2184 3.9781 18 6 0.5241 6.3360 4.7871 19 6 1.4130 7.3148 4.3641 20 6 1.6549 8.4170 5.1608 21 6 1.0214 8.5403 6.3837 22 6 0.1394 7.5643 6.8101 23 6 -0.1107 6.4627 6.0153 24 7 -0.5227 4.2458 4.2591 25 7 -0.5250 3.3834 3.3051 26 1 -0.3634 0.5918 0.8401 27 1 -0.3634 -1.0235 0.0925 28 1 -0.3633 0.4316 -0.9327 29 1 1.8932 -0.5138 0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 5.8143 0.3418 -2.1260 32 1 1.3854 1.4137 1.9517 33 1 0.9329 3.8146 0.3014 34 1 -0.2966 2.5872 0.6887 35 1 1.5450 5.5878 2.2369 36 1 1.9115 7.2169 3.4111 37 1 2.3429 9.1810 4.8302 38 1 1.2155 9.4007 7.0068 39 1 -0.3542 7.6635 7.7654 40 1 -0.7999 5.7010 6.3486 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000555162930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:54 Heat of formation + Delta-G solvation = 134.877496 kcal Electronic energy + Delta-G solvation = -21521.823050 eV Core-core repulsion = 18339.150187 eV Total energy + Delta-G solvation = -3182.672863 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.36124 -39.56259 -36.88352 -34.76879 -32.91247 -31.91875 -31.48669 -30.20105 -29.95425 -27.57377 -24.96373 -24.41309 -23.12290 -22.29299 -21.51126 -20.59957 -19.86149 -18.51342 -16.77447 -16.53152 -16.46509 -15.47665 -15.34541 -15.01328 -14.72702 -14.42588 -14.00295 -13.88039 -13.37028 -13.17248 -12.91918 -12.58546 -12.40901 -12.07018 -11.86770 -11.72092 -11.53958 -11.30422 -11.02001 -10.83165 -10.77288 -10.62368 -10.39138 -9.89451 -9.55314 -9.47739 -9.34046 -9.16628 -8.78794 -8.35647 -7.34658 -6.04361 -3.94974 0.40093 0.87341 1.91549 2.20678 2.61387 3.29866 3.34669 3.39111 3.41061 4.18145 4.36267 4.45781 4.48406 4.65667 4.82322 4.88938 5.00881 5.15726 5.21769 5.24621 5.33178 5.42174 5.55625 5.80459 5.85059 5.88162 5.91068 6.00569 6.02482 6.08504 6.19490 6.28426 6.30814 6.58002 6.60302 6.76965 6.78464 6.90867 7.22548 7.79452 7.93254 8.31321 8.51669 8.74607 9.14175 9.62902 11.09092 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.025392 B = 0.003368 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.432565 B = 8311.089646 C = 9038.852094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.147 4.147 3 C 0.195 3.805 4 H 0.022 0.978 5 C -0.499 4.499 6 H 0.080 0.920 7 C 0.072 3.928 8 N -0.894 5.894 9 Si 0.858 3.142 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.256 1.256 13 N -0.668 5.668 14 C 0.140 3.860 15 C 0.006 3.994 16 C -0.031 4.031 17 N -0.252 5.252 18 C 0.132 3.868 19 C -0.119 4.119 20 C -0.098 4.098 21 C -0.118 4.118 22 C -0.101 4.101 23 C -0.106 4.106 24 N -0.087 5.087 25 N -0.255 5.255 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.262 0.738 32 H 0.332 0.668 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.194 0.806 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.693 15.632 12.195 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.187 4.187 3 C 0.086 3.914 4 H 0.039 0.961 5 C -0.538 4.538 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.685 3.315 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.180 1.180 13 N -0.299 5.299 14 C 0.008 3.992 15 C -0.131 4.131 16 C -0.179 4.179 17 N -0.039 5.039 18 C 0.041 3.959 19 C -0.140 4.140 20 C -0.116 4.116 21 C -0.136 4.136 22 C -0.120 4.120 23 C -0.126 4.126 24 N -0.065 5.065 25 N -0.123 5.123 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.211 0.789 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.026 15.370 13.021 22.964 hybrid contribution -0.325 -0.231 -1.848 1.890 sum -11.351 15.140 11.173 21.975 Atomic orbital electron populations 1.21965 0.98387 1.00430 1.00743 1.22535 0.92790 1.01235 1.02100 1.19564 0.96724 0.88551 0.86556 0.96066 1.20983 0.89099 1.41447 1.02237 0.90219 1.24901 0.94733 0.94666 0.98674 1.69990 1.11969 1.43462 1.27737 0.87288 0.81917 0.77933 0.84375 1.20594 1.21576 1.18040 1.60663 1.37971 1.18991 1.12238 1.20314 0.94510 0.95452 0.88895 1.22163 0.97445 0.94472 0.98972 1.23566 1.04499 1.01663 0.88171 1.44617 1.29521 1.15911 1.13877 1.17714 1.00050 0.86236 0.91948 1.21017 0.97863 0.93579 1.01546 1.21058 0.99435 0.97046 0.94104 1.21343 0.96593 0.99287 0.96408 1.21106 0.97946 0.93172 0.99737 1.21020 0.99997 0.99388 0.92165 1.78265 1.12434 0.94464 1.21334 1.75032 1.18358 1.19866 0.99047 0.93203 0.93856 0.93700 0.92271 0.91970 0.92814 0.85024 0.89474 0.93937 0.78863 0.84461 0.84572 0.85124 0.84720 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.45 37.16 0.35 -2.46 16 2 C -0.15 -3.14 4.56 -26.73 -0.12 -3.27 16 3 C 0.19 4.45 1.73 -68.87 -0.12 4.33 16 4 H 0.02 0.49 6.15 -51.93 -0.32 0.17 16 5 C -0.50 -13.86 9.25 -34.44 -0.32 -14.18 16 6 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 7 C 0.07 2.04 5.30 -17.82 -0.09 1.94 16 8 N -0.89 -27.08 13.96 55.43 0.77 -26.31 16 9 Si 0.86 20.80 25.86 -169.99 -4.40 16.40 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.26 -5.81 5.65 56.52 0.32 -5.49 16 13 N -0.67 -13.64 6.02 -109.22 -0.66 -14.30 16 14 C 0.14 2.41 5.64 -4.98 -0.03 2.39 16 15 C 0.01 0.09 6.79 -82.77 -0.56 -0.47 16 16 C -0.03 -0.45 10.85 -16.67 -0.18 -0.63 16 17 N -0.25 -3.59 3.56 -10.47 -0.04 -3.63 16 18 C 0.13 1.51 6.68 -83.57 -0.56 0.95 16 19 C -0.12 -1.08 9.46 -39.41 -0.37 -1.45 16 20 C -0.10 -0.68 10.04 -39.61 -0.40 -1.08 16 21 C -0.12 -0.75 10.04 -39.55 -0.40 -1.14 16 22 C -0.10 -0.73 10.04 -39.61 -0.40 -1.12 16 23 C -0.11 -1.04 9.62 -39.41 -0.38 -1.42 16 24 N -0.09 -1.44 12.42 60.35 0.75 -0.69 16 25 N -0.25 -4.54 12.39 33.29 0.41 -4.13 16 26 H 0.05 0.85 5.97 -51.93 -0.31 0.54 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 30 H 0.06 1.41 5.17 -51.93 -0.27 1.14 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.33 6.70 7.71 -39.29 -0.30 6.39 16 33 H 0.09 1.43 8.06 -51.93 -0.42 1.01 16 34 H 0.04 0.72 6.61 -51.93 -0.34 0.37 16 35 H 0.19 2.15 7.11 -52.48 -0.37 1.78 16 36 H 0.14 1.07 6.77 -52.49 -0.36 0.71 16 37 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 38 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.14 1.41 7.69 -52.49 -0.40 1.01 16 LS Contribution 329.63 15.07 4.97 4.97 Total: -1.00 -32.53 329.63 -7.03 -39.56 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.27 Total: 5.74 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -3.58 Total: -17.62 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 1.24 Total: -49.06 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.40 Total: 16.40 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.53 -7.03 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555162930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.438 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds