Wall clock time and date at job start Tue Mar 31 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47126 * 2 1 4 4 H 1.09002 * 109.47158 * 305.59990 * 3 2 1 5 5 C 1.50699 * 109.46705 * 185.60467 * 3 2 1 6 6 H 1.07998 * 120.00128 * 245.40106 * 5 3 2 7 7 C 1.37881 * 120.00268 * 65.40486 * 5 3 2 8 8 N 1.31518 * 120.00176 * 197.21526 * 7 5 3 9 9 Si 1.86801 * 119.99714 * 17.21569 * 7 5 3 10 10 H 1.48500 * 109.46910 * 86.80752 * 9 7 5 11 11 H 1.48499 * 109.47045 * 206.80439 * 9 7 5 12 12 H 1.48496 * 109.47046 * 326.80769 * 9 7 5 13 13 N 1.46895 * 109.47390 * 65.60563 * 3 2 1 14 14 C 1.46902 * 110.99983 * 251.61892 * 13 3 2 15 15 C 1.50694 * 109.47258 * 183.52162 * 14 13 3 16 16 C 1.35369 * 126.73313 * 94.71072 * 15 14 13 17 17 N 1.36119 * 106.05338 * 179.85607 * 16 15 14 18 18 C 1.40245 * 125.94066 * 180.18569 * 17 16 15 19 19 C 1.38818 * 120.06714 * 0.02562 * 18 17 16 20 20 C 1.38129 * 119.93382 * 179.74729 * 19 18 17 21 21 C 1.38278 * 120.06294 * 0.55233 * 20 19 18 22 22 C 1.38280 * 120.13240 * 359.70239 * 21 20 19 23 23 C 1.38121 * 120.06339 * 0.02562 * 22 21 20 24 24 N 1.28724 * 108.11166 * 0.41449 * 17 16 15 25 25 N 1.28605 * 110.23653 * 359.73846 * 24 17 16 26 26 H 1.09000 * 109.47584 * 305.16351 * 1 2 3 27 27 H 1.09002 * 109.47677 * 185.16200 * 1 2 3 28 28 H 1.09002 * 109.46974 * 65.16704 * 1 2 3 29 29 H 1.09003 * 109.46732 * 119.99578 * 2 1 3 30 30 H 1.09004 * 109.47453 * 239.99457 * 2 1 3 31 31 H 0.96995 * 120.00064 * 180.02562 * 8 7 5 32 32 H 1.00908 * 110.99894 * 15.56806 * 13 3 2 33 33 H 1.08996 * 109.46754 * 303.52564 * 14 13 3 34 34 H 1.09006 * 109.47105 * 63.52302 * 14 13 3 35 35 H 1.08005 * 126.96999 * 359.96656 * 16 15 14 36 36 H 1.07999 * 120.03444 * 0.02859 * 19 18 17 37 37 H 1.07992 * 119.96934 * 180.28091 * 20 19 18 38 38 H 1.08003 * 119.93091 * 179.72504 * 21 20 19 39 39 H 1.07993 * 119.96872 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.03288 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5971 1.9845 -0.8356 5 6 3.5405 1.4447 -0.1388 6 1 4.1572 1.8069 0.6705 7 6 4.1263 0.9843 -1.2989 8 7 5.4022 0.6654 -1.3097 9 14 3.1077 0.8136 -2.8554 10 1 3.0999 2.1064 -3.5862 11 1 3.6974 -0.2400 -3.7199 12 1 1.7160 0.4389 -2.4976 13 7 1.6639 2.0949 1.2613 14 6 0.6037 3.0883 1.0445 15 6 0.3056 3.7960 2.3411 16 6 0.8302 4.9709 2.7614 17 7 0.2724 5.2184 3.9781 18 6 0.5241 6.3360 4.7871 19 6 1.4130 7.3148 4.3641 20 6 1.6549 8.4170 5.1608 21 6 1.0214 8.5403 6.3837 22 6 0.1394 7.5643 6.8101 23 6 -0.1107 6.4627 6.0153 24 7 -0.5227 4.2458 4.2591 25 7 -0.5250 3.3834 3.3051 26 1 -0.3634 0.5918 0.8401 27 1 -0.3634 -1.0235 0.0925 28 1 -0.3633 0.4316 -0.9327 29 1 1.8932 -0.5138 0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 5.8143 0.3418 -2.1260 32 1 1.3854 1.4137 1.9517 33 1 0.9329 3.8146 0.3014 34 1 -0.2966 2.5872 0.6887 35 1 1.5450 5.5878 2.2369 36 1 1.9115 7.2169 3.4111 37 1 2.3429 9.1810 4.8302 38 1 1.2155 9.4007 7.0068 39 1 -0.3542 7.6635 7.7654 40 1 -0.7999 5.7010 6.3486 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000555162930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:54 Heat of formation + Delta-G solvation = 112.744492 kcal Electronic energy + Delta-G solvation = -21522.782809 eV Core-core repulsion = 18339.150187 eV Total energy + Delta-G solvation = -3183.632622 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.49781 -40.24135 -38.52851 -35.82093 -34.59595 -33.61139 -32.29510 -31.41487 -30.84029 -29.32985 -26.46507 -25.33068 -24.26935 -23.69298 -22.45871 -21.74201 -21.53617 -19.47731 -18.72675 -17.64173 -17.21859 -16.77368 -16.66073 -16.30498 -15.84155 -15.71811 -15.24765 -14.76877 -14.57161 -14.48330 -14.32015 -13.97990 -13.69677 -13.50702 -13.34156 -12.80575 -12.71490 -12.59999 -12.29649 -12.28796 -12.13354 -11.97781 -11.94395 -11.63026 -11.34423 -11.33173 -10.50882 -10.36697 -10.08790 -9.61254 -8.98587 -8.22889 -6.18385 -0.41239 0.26951 0.96839 1.24559 1.35951 1.39326 1.42141 1.51118 2.41280 2.70325 3.09242 3.17420 3.51625 3.67957 3.80326 3.91144 4.03454 4.16976 4.22248 4.31686 4.35245 4.38922 4.42908 4.50949 4.59136 4.65324 4.77579 4.86597 4.96804 5.04312 5.09541 5.17694 5.26360 5.29912 5.31701 5.44448 5.52308 5.59471 5.78069 5.93022 6.07562 6.65293 6.77701 6.86866 7.33107 7.43929 8.94561 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.025392 B = 0.003368 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.432565 B = 8311.089646 C = 9038.852094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.201 3.799 4 H 0.030 0.970 5 C -0.505 4.505 6 H 0.030 0.970 7 C 0.015 3.985 8 N -0.946 5.946 9 Si 0.926 3.074 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.228 1.228 13 N -0.679 5.679 14 C 0.146 3.854 15 C -0.015 4.015 16 C -0.026 4.026 17 N -0.241 5.241 18 C 0.088 3.912 19 C -0.124 4.124 20 C -0.097 4.097 21 C -0.105 4.105 22 C -0.100 4.100 23 C -0.120 4.120 24 N -0.108 5.108 25 N -0.285 5.285 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.263 0.737 32 H 0.332 0.668 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.223 0.777 36 H 0.146 0.854 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.161 0.839 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.194 17.792 12.271 24.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.092 3.908 4 H 0.048 0.952 5 C -0.544 4.544 6 H 0.048 0.952 7 C -0.182 4.182 8 N -0.586 5.586 9 Si 0.750 3.250 10 H -0.198 1.198 11 H -0.219 1.219 12 H -0.151 1.151 13 N -0.310 5.310 14 C 0.016 3.984 15 C -0.152 4.152 16 C -0.174 4.174 17 N -0.028 5.028 18 C -0.002 4.002 19 C -0.145 4.145 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.140 4.140 24 N -0.086 5.086 25 N -0.152 5.152 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.149 0.851 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.239 0.761 36 H 0.164 0.836 37 H 0.183 0.817 38 H 0.183 0.817 39 H 0.179 0.821 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.569 17.551 13.141 25.272 hybrid contribution 0.244 -0.714 -1.647 1.811 sum -12.325 16.837 11.494 23.822 Atomic orbital electron populations 1.21857 0.95160 1.02025 1.01491 1.22406 0.95591 0.99488 1.01049 1.19345 0.93489 0.90031 0.87898 0.95249 1.21251 0.91633 1.40616 1.00869 0.95153 1.25751 0.95841 0.94358 1.02262 1.70143 1.14319 1.45401 1.28751 0.86178 0.81424 0.78019 0.79360 1.19791 1.21864 1.15092 1.60473 1.40072 1.19283 1.11179 1.20265 0.93715 0.94774 0.89686 1.22122 0.98522 0.95554 0.98986 1.23977 1.04103 1.01214 0.88141 1.44825 1.28199 1.15900 1.13897 1.18166 1.02657 0.86506 0.92850 1.21278 0.97248 0.93601 1.02346 1.21476 0.99434 0.96691 0.93937 1.21818 0.94747 0.99551 0.96227 1.21453 0.97946 0.92208 1.00267 1.21144 1.00181 1.00363 0.92331 1.78173 1.13703 0.95250 1.21426 1.74961 1.19560 1.20960 0.99746 0.92656 0.91858 0.92764 0.93276 0.93218 0.92785 0.85070 0.88527 0.93152 0.76098 0.83603 0.81681 0.81702 0.82146 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 9.45 71.98 0.68 -4.20 16 2 C -0.15 -6.07 4.56 30.59 0.14 -5.93 16 3 C 0.20 9.13 1.73 44.17 0.08 9.21 16 4 H 0.03 1.30 6.15 -2.39 -0.01 1.29 16 5 C -0.51 -28.78 9.25 25.60 0.24 -28.54 16 6 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 7 C 0.02 0.87 5.30 84.66 0.45 1.32 16 8 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 9 Si 0.93 42.74 25.86 68.60 1.77 44.52 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.23 -9.42 5.65 99.48 0.56 -8.86 16 13 N -0.68 -27.78 6.02 -499.48 -3.01 -30.79 16 14 C 0.15 4.94 5.64 85.55 0.48 5.42 16 15 C -0.01 -0.48 6.79 41.60 0.28 -0.20 16 16 C -0.03 -0.73 10.85 83.37 0.90 0.18 16 17 N -0.24 -6.88 3.56 -187.04 -0.67 -7.55 16 18 C 0.09 1.97 6.68 38.07 0.25 2.23 16 19 C -0.12 -2.03 9.46 22.38 0.21 -1.82 16 20 C -0.10 -1.03 10.04 22.25 0.22 -0.81 16 21 C -0.11 -0.94 10.04 22.29 0.22 -0.72 16 22 C -0.10 -1.20 10.04 22.25 0.22 -0.98 16 23 C -0.12 -2.31 9.62 22.38 0.22 -2.09 16 24 N -0.11 -3.65 12.42 37.02 0.46 -3.19 16 25 N -0.29 -10.32 12.39 -48.59 -0.60 -10.93 16 26 H 0.05 1.77 5.97 -2.39 -0.01 1.75 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.05 2.10 8.06 -2.39 -0.02 2.08 16 30 H 0.05 2.17 5.17 -2.38 -0.01 2.16 16 31 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.33 13.51 7.71 -89.69 -0.69 12.82 16 33 H 0.10 3.03 8.06 -2.39 -0.02 3.01 16 34 H 0.05 1.62 6.61 -2.38 -0.02 1.61 16 35 H 0.22 4.64 7.11 -2.91 -0.02 4.62 16 36 H 0.15 2.01 6.77 -2.91 -0.02 1.99 16 37 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 38 H 0.17 0.39 8.06 -2.91 -0.02 0.36 16 39 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.13 2.69 7.69 -2.91 -0.02 2.67 16 Total: -1.00 -73.79 329.63 3.08 -70.71 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.22 Total: 23.02 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 4.60 Total: -26.94 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -3.52 Total: -111.31 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.77 Total: 44.52 kcal Total: -73.79 3.08 -70.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555162930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.456 kcal (2) G-P(sol) polarization free energy of solvation -73.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds