Wall clock time and date at job start Tue Mar 31 2020 05:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47510 * 2 1 4 4 H 1.08999 * 109.47111 * 54.83590 * 3 2 1 5 5 C 1.50693 * 109.47486 * 174.84123 * 3 2 1 6 6 H 1.08007 * 120.00341 * 120.00230 * 5 3 2 7 7 C 1.37880 * 120.00378 * 300.00091 * 5 3 2 8 8 N 1.31520 * 119.99523 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00375 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47193 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47009 * 120.00102 * 9 7 5 12 12 H 1.48500 * 109.47077 * 239.99777 * 9 7 5 13 13 N 1.46901 * 109.47209 * 294.84478 * 3 2 1 14 14 C 1.46899 * 111.00495 * 153.79927 * 13 3 2 15 15 C 1.50695 * 109.47523 * 175.50541 * 14 13 3 16 16 N 1.29672 * 118.31463 * 275.60956 * 15 14 13 17 17 C 1.35891 * 122.15489 * 180.33162 * 16 15 14 18 18 C 1.39574 * 121.42288 * 179.07917 * 17 16 15 19 19 C 1.37775 * 119.72467 * 179.97438 * 18 17 16 20 20 C 1.38742 * 120.77425 * 0.02562 * 19 18 17 21 21 C 1.37946 * 120.48990 * 359.97438 * 20 19 18 22 22 C 1.39058 * 119.54019 * 0.28027 * 21 20 19 23 23 C 1.47624 * 121.84161 * 179.70169 * 22 21 20 24 24 N 1.30713 * 121.44814 * 359.97438 * 23 22 21 25 25 N 1.36061 * 118.31206 * 94.99606 * 15 14 13 26 26 H 0.97002 * 119.95272 * 0.02652 * 25 15 14 27 27 H 1.08998 * 109.46809 * 306.21970 * 1 2 3 28 28 H 1.08999 * 109.47164 * 66.22143 * 1 2 3 29 29 H 1.09004 * 109.47214 * 186.21994 * 1 2 3 30 30 H 1.09005 * 109.46943 * 240.00032 * 2 1 3 31 31 H 1.09000 * 109.47783 * 120.00587 * 2 1 3 32 32 H 0.96993 * 120.00028 * 180.02562 * 8 7 5 33 33 H 1.00896 * 111.00297 * 29.84024 * 13 3 2 34 34 H 1.08997 * 109.46886 * 55.50662 * 14 13 3 35 35 H 1.08998 * 109.46960 * 295.51094 * 14 13 3 36 36 H 1.08003 * 120.13565 * 359.97438 * 18 17 16 37 37 H 1.08003 * 119.60917 * 179.97438 * 19 18 17 38 38 H 1.08000 * 119.75430 * 179.97438 * 20 19 18 39 39 H 1.07995 * 120.23285 * 180.02562 * 21 20 19 40 40 H 0.97002 * 120.00281 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6032 1.9823 0.8401 5 6 3.5416 1.4443 0.1277 6 1 4.1490 1.8882 -0.6472 7 6 4.1401 0.8794 1.2340 8 7 3.4006 0.3385 2.1774 9 14 6.0014 0.8812 1.3920 10 1 6.5983 1.5453 0.2055 11 1 6.3932 1.6179 2.6203 12 1 6.4923 -0.5178 1.4761 13 7 1.6547 2.0981 -1.2568 14 6 1.5478 3.5526 -1.0807 15 6 1.2602 4.1999 -2.4108 16 7 2.2591 4.4689 -3.1927 17 6 2.0899 5.0577 -4.4057 18 6 3.1778 5.3576 -5.2270 19 6 2.9660 5.9544 -6.4506 20 6 1.6822 6.2622 -6.8775 21 6 0.5924 5.9748 -6.0822 22 6 0.7874 5.3774 -4.8417 23 6 -0.3414 5.0537 -3.9471 24 7 -1.5765 5.3167 -4.2849 25 7 -0.0353 4.4606 -2.7349 26 1 -0.7453 4.2304 -2.1154 27 1 -0.3633 0.6072 0.8291 28 1 -0.3633 0.4144 -0.9404 29 1 -0.3634 -1.0216 0.1113 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8215 -0.0586 2.9558 33 1 0.7941 1.7132 -1.6164 34 1 2.4857 3.9403 -0.6832 35 1 0.7386 3.7758 -0.3854 36 1 4.1816 5.1228 -4.9047 37 1 3.8092 6.1860 -7.0845 38 1 1.5352 6.7303 -7.8396 39 1 -0.4051 6.2159 -6.4188 40 1 -2.3023 5.0947 -3.6810 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581378322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:08 Heat of formation + Delta-G solvation = 65.946142 kcal Electronic energy + Delta-G solvation = -21903.196715 eV Core-core repulsion = 18717.534764 eV Total energy + Delta-G solvation = -3185.661951 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.91517 -38.05959 -36.52126 -35.38279 -33.02897 -32.13124 -31.23706 -30.78335 -29.34136 -27.19034 -25.39547 -24.32065 -22.91692 -22.02568 -21.29022 -19.72364 -19.18137 -18.52814 -17.44251 -16.36221 -15.71942 -15.33383 -14.94973 -14.85719 -14.60166 -14.42271 -13.90410 -13.55834 -13.35187 -12.71027 -12.63287 -12.42658 -12.21942 -11.78593 -11.67530 -11.51557 -11.36936 -11.20866 -10.88414 -10.62725 -10.20294 -10.01995 -9.91451 -9.79845 -9.74971 -9.43614 -9.17600 -8.87132 -8.40003 -7.65347 -7.46752 -6.01886 -4.05629 0.68846 0.93955 2.29830 2.77636 2.84315 3.31130 3.39631 3.46446 4.01438 4.08953 4.21735 4.43504 4.73815 4.93331 5.00767 5.16820 5.24741 5.30192 5.36419 5.46463 5.71805 5.75252 5.98844 6.01726 6.03587 6.14899 6.19996 6.28465 6.29827 6.42422 6.45715 6.70995 6.81758 6.92673 7.02172 7.05757 7.29502 7.65591 7.85731 8.00107 8.07057 8.24413 8.27332 8.56941 9.04065 9.60035 11.03762 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.004209 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.949510 B = 6651.165831 C = 7808.420006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.006 0.994 5 C -0.494 4.494 6 H 0.067 0.933 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.671 5.671 14 C 0.112 3.888 15 C 0.417 3.583 16 N -0.514 5.514 17 C 0.157 3.843 18 C -0.112 4.112 19 C -0.082 4.082 20 C -0.151 4.151 21 C -0.044 4.044 22 C -0.130 4.130 23 C 0.442 3.558 24 N -0.742 5.742 25 N -0.680 5.680 26 H 0.410 0.590 27 H 0.043 0.957 28 H 0.032 0.968 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.103 0.897 32 H 0.259 0.741 33 H 0.317 0.683 34 H 0.117 0.883 35 H 0.039 0.961 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.136 0.864 40 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.363 9.249 -11.376 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.115 3.885 4 H 0.024 0.976 5 C -0.533 4.533 6 H 0.086 0.914 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.304 5.304 14 C -0.020 4.020 15 C 0.147 3.853 16 N -0.235 5.235 17 C 0.047 3.953 18 C -0.132 4.132 19 C -0.102 4.102 20 C -0.170 4.170 21 C -0.065 4.065 22 C -0.136 4.136 23 C 0.167 3.833 24 N -0.373 5.373 25 N -0.313 5.313 26 H 0.248 0.752 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.121 0.879 32 H 0.069 0.931 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.057 0.943 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.154 0.846 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.203 9.533 -12.286 16.398 hybrid contribution -1.184 -0.427 1.652 2.077 sum -6.387 9.106 -10.634 15.388 Atomic orbital electron populations 1.21896 0.99658 1.00010 0.99280 1.21793 0.91129 1.00122 1.03460 1.19232 0.95993 0.89964 0.83339 0.97625 1.21267 0.90907 1.36485 1.04596 0.91447 1.24952 0.98287 0.95485 0.95752 1.69871 1.34774 1.39419 1.09694 0.86468 0.85609 0.77602 0.77944 1.19560 1.21256 1.21189 1.60655 1.36181 0.99409 1.34118 1.20996 1.03121 0.91342 0.86528 1.23262 0.78906 0.87500 0.95623 1.68564 1.29317 1.20692 1.04878 1.18834 0.91457 0.93678 0.91324 1.20852 0.98378 1.00313 0.93612 1.21204 0.97264 0.96304 0.95430 1.21113 0.92324 1.03122 1.00457 1.20961 0.99704 0.94280 0.91547 1.19049 0.90452 1.07606 0.96448 1.21148 0.92597 0.87220 0.82375 1.70168 0.97907 1.31786 1.37467 1.44718 1.09477 1.58010 1.19119 0.75233 0.93813 0.94870 0.94176 0.93810 0.87902 0.93097 0.86607 0.86523 0.94350 0.84427 0.85367 0.85561 0.84623 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.63 37.16 0.36 -2.32 16 2 C -0.13 -2.79 5.35 -26.74 -0.14 -2.94 16 3 C 0.22 5.08 2.03 -68.87 -0.14 4.94 16 4 H 0.01 0.15 7.84 -51.93 -0.41 -0.26 16 5 C -0.49 -12.97 8.61 -34.44 -0.30 -13.27 16 6 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 7 C 0.06 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -24.48 11.29 55.43 0.63 -23.85 16 9 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.67 -13.01 6.26 -109.23 -0.68 -13.69 16 14 C 0.11 1.87 5.77 -4.98 -0.03 1.84 16 15 C 0.42 6.53 7.26 -155.16 -1.13 5.40 16 16 N -0.51 -8.91 10.20 -8.20 -0.08 -9.00 16 17 C 0.16 2.46 6.63 -84.51 -0.56 1.90 16 18 C -0.11 -1.50 10.03 -39.25 -0.39 -1.89 16 19 C -0.08 -0.88 10.00 -39.56 -0.40 -1.27 16 20 C -0.15 -1.58 10.03 -39.50 -0.40 -1.98 16 21 C -0.04 -0.55 9.66 -39.38 -0.38 -0.94 16 22 C -0.13 -1.91 5.90 -104.70 -0.62 -2.53 16 23 C 0.44 6.24 8.05 -153.55 -1.24 5.01 16 24 N -0.74 -9.89 13.51 32.61 0.44 -9.45 16 25 N -0.68 -8.86 5.41 -7.88 -0.04 -8.91 16 26 H 0.41 4.19 8.68 -40.82 -0.35 3.83 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.52 6.65 -51.93 -0.35 0.17 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 2.58 5.95 -51.93 -0.31 2.28 16 32 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.32 5.57 6.61 -39.29 -0.26 5.31 16 34 H 0.12 2.18 7.97 -51.93 -0.41 1.77 16 35 H 0.04 0.56 8.04 -51.93 -0.42 0.14 16 36 H 0.14 1.75 8.06 -52.48 -0.42 1.32 16 37 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.14 1.58 7.76 -52.49 -0.41 1.17 16 40 H 0.34 3.78 8.89 -40.82 -0.36 3.42 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -29.26 334.86 -10.53 -39.79 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.36 Total: 10.75 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -5.45 Total: -6.65 kcal Atomic # 7 Polarization: -65.16 SS G_CDS: 0.26 Total: -64.90 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.26 -10.53 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581378322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.734 kcal (2) G-P(sol) polarization free energy of solvation -29.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds