Wall clock time and date at job start Tue Mar 31 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47510 * 2 1 4 4 H 1.08999 * 109.47111 * 54.83590 * 3 2 1 5 5 C 1.50693 * 109.47486 * 174.84123 * 3 2 1 6 6 H 1.08007 * 120.00341 * 120.00230 * 5 3 2 7 7 C 1.37880 * 120.00378 * 300.00091 * 5 3 2 8 8 N 1.31520 * 119.99523 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00375 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47193 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47009 * 120.00102 * 9 7 5 12 12 H 1.48500 * 109.47077 * 239.99777 * 9 7 5 13 13 N 1.46901 * 109.47209 * 294.84478 * 3 2 1 14 14 C 1.46899 * 111.00495 * 153.79927 * 13 3 2 15 15 C 1.50695 * 109.47523 * 175.50541 * 14 13 3 16 16 N 1.29672 * 118.31463 * 275.60956 * 15 14 13 17 17 C 1.35891 * 122.15489 * 180.33162 * 16 15 14 18 18 C 1.39574 * 121.42288 * 179.07917 * 17 16 15 19 19 C 1.37775 * 119.72467 * 179.97438 * 18 17 16 20 20 C 1.38742 * 120.77425 * 0.02562 * 19 18 17 21 21 C 1.37946 * 120.48990 * 359.97438 * 20 19 18 22 22 C 1.39058 * 119.54019 * 0.28027 * 21 20 19 23 23 C 1.47624 * 121.84161 * 179.70169 * 22 21 20 24 24 N 1.30713 * 121.44814 * 359.97438 * 23 22 21 25 25 N 1.36061 * 118.31206 * 94.99606 * 15 14 13 26 26 H 0.97002 * 119.95272 * 0.02652 * 25 15 14 27 27 H 1.08998 * 109.46809 * 306.21970 * 1 2 3 28 28 H 1.08999 * 109.47164 * 66.22143 * 1 2 3 29 29 H 1.09004 * 109.47214 * 186.21994 * 1 2 3 30 30 H 1.09005 * 109.46943 * 240.00032 * 2 1 3 31 31 H 1.09000 * 109.47783 * 120.00587 * 2 1 3 32 32 H 0.96993 * 120.00028 * 180.02562 * 8 7 5 33 33 H 1.00896 * 111.00297 * 29.84024 * 13 3 2 34 34 H 1.08997 * 109.46886 * 55.50662 * 14 13 3 35 35 H 1.08998 * 109.46960 * 295.51094 * 14 13 3 36 36 H 1.08003 * 120.13565 * 359.97438 * 18 17 16 37 37 H 1.08003 * 119.60917 * 179.97438 * 19 18 17 38 38 H 1.08000 * 119.75430 * 179.97438 * 20 19 18 39 39 H 1.07995 * 120.23285 * 180.02562 * 21 20 19 40 40 H 0.97002 * 120.00281 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6032 1.9823 0.8401 5 6 3.5416 1.4443 0.1277 6 1 4.1490 1.8882 -0.6472 7 6 4.1401 0.8794 1.2340 8 7 3.4006 0.3385 2.1774 9 14 6.0014 0.8812 1.3920 10 1 6.5983 1.5453 0.2055 11 1 6.3932 1.6179 2.6203 12 1 6.4923 -0.5178 1.4761 13 7 1.6547 2.0981 -1.2568 14 6 1.5478 3.5526 -1.0807 15 6 1.2602 4.1999 -2.4108 16 7 2.2591 4.4689 -3.1927 17 6 2.0899 5.0577 -4.4057 18 6 3.1778 5.3576 -5.2270 19 6 2.9660 5.9544 -6.4506 20 6 1.6822 6.2622 -6.8775 21 6 0.5924 5.9748 -6.0822 22 6 0.7874 5.3774 -4.8417 23 6 -0.3414 5.0537 -3.9471 24 7 -1.5765 5.3167 -4.2849 25 7 -0.0353 4.4606 -2.7349 26 1 -0.7453 4.2304 -2.1154 27 1 -0.3633 0.6072 0.8291 28 1 -0.3633 0.4144 -0.9404 29 1 -0.3634 -1.0216 0.1113 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8215 -0.0586 2.9558 33 1 0.7941 1.7132 -1.6164 34 1 2.4857 3.9403 -0.6832 35 1 0.7386 3.7758 -0.3854 36 1 4.1816 5.1228 -4.9047 37 1 3.8092 6.1860 -7.0845 38 1 1.5352 6.7303 -7.8396 39 1 -0.4051 6.2159 -6.4188 40 1 -2.3023 5.0947 -3.6810 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581378322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:07 Heat of formation + Delta-G solvation = 47.543996 kcal Electronic energy + Delta-G solvation = -21903.994692 eV Core-core repulsion = 18717.534764 eV Total energy + Delta-G solvation = -3186.459928 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.98455 -39.12361 -38.05018 -36.57041 -34.56942 -33.60289 -32.69769 -31.77010 -30.47770 -28.84133 -26.95282 -25.31062 -24.56693 -23.21128 -22.39475 -21.48530 -20.19329 -19.60046 -18.53741 -18.32752 -16.89321 -16.68646 -16.44760 -16.11659 -15.85575 -15.54751 -15.41601 -14.83600 -14.49598 -14.27289 -14.01284 -13.70327 -13.52733 -13.24392 -13.01417 -12.75720 -12.63956 -12.58991 -12.50264 -12.43842 -11.96554 -11.62412 -11.50085 -11.23835 -11.03964 -10.77162 -10.58662 -10.40579 -9.83395 -9.09722 -8.71036 -8.04800 -6.14809 -0.35079 -0.04739 1.22123 1.42433 1.46137 1.57775 1.72597 1.83476 2.47575 2.90003 3.05456 3.17446 3.21859 3.61128 3.82798 4.02017 4.10545 4.26036 4.29803 4.42974 4.50572 4.56793 4.66086 4.72594 4.76472 4.82960 5.01813 5.08999 5.20184 5.22582 5.33220 5.36513 5.47870 5.51569 5.56613 5.77644 5.88789 5.90762 6.07813 6.31762 6.44264 6.87036 6.97645 7.00317 7.15087 7.53859 8.98406 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.004209 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.949510 B = 6651.165831 C = 7808.420006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.229 3.771 4 H -0.014 1.014 5 C -0.509 4.509 6 H 0.049 0.951 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.677 5.677 14 C 0.119 3.881 15 C 0.414 3.586 16 N -0.544 5.544 17 C 0.122 3.878 18 C -0.127 4.127 19 C -0.072 4.072 20 C -0.136 4.136 21 C -0.053 4.053 22 C -0.148 4.148 23 C 0.434 3.566 24 N -0.742 5.742 25 N -0.668 5.668 26 H 0.423 0.577 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.260 0.740 33 H 0.329 0.671 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.135 0.865 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.144 0.856 40 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.097 10.195 -13.318 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.122 3.878 4 H 0.004 0.996 5 C -0.547 4.547 6 H 0.067 0.933 7 C -0.184 4.184 8 N -0.558 5.558 9 Si 0.776 3.224 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.310 5.310 14 C -0.013 4.013 15 C 0.143 3.857 16 N -0.266 5.266 17 C 0.013 3.987 18 C -0.147 4.147 19 C -0.091 4.091 20 C -0.154 4.154 21 C -0.074 4.074 22 C -0.154 4.154 23 C 0.158 3.842 24 N -0.374 5.374 25 N -0.302 5.302 26 H 0.263 0.737 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.148 0.852 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.153 0.847 37 H 0.182 0.818 38 H 0.182 0.818 39 H 0.161 0.839 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.970 10.488 -14.238 18.665 hybrid contribution -0.949 -0.637 2.125 2.413 sum -6.919 9.851 -12.113 17.077 Atomic orbital electron populations 1.21757 0.96067 1.01283 1.00602 1.21609 0.94348 0.98834 1.01294 1.18961 0.94122 0.90663 0.84098 0.99630 1.21491 0.92843 1.36252 1.04155 0.93313 1.25565 1.01772 0.95391 0.95653 1.69976 1.35963 1.39901 1.09958 0.85631 0.81494 0.77529 0.77713 1.19860 1.20723 1.20848 1.60418 1.37268 1.00968 1.32359 1.20823 1.02850 0.89649 0.87955 1.22781 0.79776 0.88184 0.94954 1.68457 1.30675 1.21374 1.06049 1.19095 0.92777 0.95422 0.91401 1.21077 0.97844 1.01044 0.94701 1.21608 0.98737 0.94357 0.94418 1.21574 0.91438 1.01181 1.01247 1.21192 1.00886 0.94224 0.91052 1.19279 0.90243 1.08327 0.97552 1.21233 0.92818 0.87541 0.82591 1.70159 0.97892 1.31539 1.37822 1.44485 1.08818 1.57698 1.19247 0.73742 0.93728 0.92512 0.92680 0.94836 0.91109 0.93102 0.85219 0.89138 0.91732 0.84706 0.81792 0.81819 0.83874 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.63 71.98 0.69 -4.07 16 2 C -0.12 -5.44 5.35 30.59 0.16 -5.28 16 3 C 0.23 10.73 2.03 44.16 0.09 10.82 16 4 H -0.01 -0.69 7.84 -2.39 -0.02 -0.71 16 5 C -0.51 -27.49 8.61 25.60 0.22 -27.27 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 7 C 0.01 0.78 5.29 84.65 0.45 1.23 16 8 N -0.92 -50.97 11.29 21.45 0.24 -50.73 16 9 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 N -0.68 -26.47 6.26 -499.50 -3.13 -29.59 16 14 C 0.12 4.02 5.77 85.56 0.49 4.52 16 15 C 0.41 13.06 7.26 138.04 1.00 14.07 16 16 N -0.54 -19.30 10.20 -179.85 -1.83 -21.14 16 17 C 0.12 3.83 6.63 39.52 0.26 4.09 16 18 C -0.13 -3.31 10.03 22.48 0.23 -3.08 16 19 C -0.07 -1.33 10.00 22.28 0.22 -1.10 16 20 C -0.14 -2.37 10.03 22.32 0.22 -2.15 16 21 C -0.05 -1.21 9.66 22.40 0.22 -1.00 16 22 C -0.15 -4.24 5.90 -19.92 -0.12 -4.36 16 23 C 0.43 11.84 8.05 136.03 1.09 12.93 16 24 N -0.74 -18.63 13.51 -50.75 -0.69 -19.31 16 25 N -0.67 -16.96 5.41 -178.86 -0.97 -17.92 16 26 H 0.42 8.10 8.68 -92.71 -0.80 7.30 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.66 6.65 -2.39 -0.02 1.64 16 29 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.07 3.63 5.95 -2.39 -0.01 3.62 16 32 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 33 H 0.33 11.34 6.61 -89.70 -0.59 10.74 16 34 H 0.09 3.55 7.97 -2.39 -0.02 3.53 16 35 H 0.06 1.84 8.04 -2.39 -0.02 1.82 16 36 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.14 3.00 7.76 -2.91 -0.02 2.98 16 40 H 0.35 7.20 8.89 -92.71 -0.82 6.37 16 Total: -1.00 -64.73 334.86 -0.24 -64.97 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: -1.13 Total: 28.54 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 5.24 Total: -0.64 kcal Atomic # 7 Polarization: -132.33 SS G_CDS: -6.37 Total: -138.70 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -64.73 -0.24 -64.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581378322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.510 kcal (2) G-P(sol) polarization free energy of solvation -64.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds