Wall clock time and date at job start Tue Mar 31 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46910 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47081 * 119.99681 * 9 7 5 12 12 H 1.48493 * 109.47178 * 239.99915 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46497 * 109.46926 * 65.00537 * 13 2 1 15 15 C 1.39689 * 120.00206 * 179.97438 * 14 13 2 16 16 C 1.39004 * 120.01527 * 359.72606 * 15 14 13 17 17 C 1.38163 * 120.17022 * 179.71624 * 16 15 14 18 18 C 1.38096 * 120.19911 * 0.55429 * 17 16 15 19 19 C 1.39348 * 120.02457 * 359.72201 * 18 17 16 20 20 C 1.48415 * 120.08318 * 180.02562 * 19 18 17 21 21 N 1.33980 * 125.64904 * 359.97438 * 20 19 18 22 22 C 1.30678 * 109.77689 * 180.02562 * 21 20 19 23 23 N 1.34516 * 108.29599 * 359.97438 * 22 21 20 24 24 H 0.97002 * 126.74332 * 180.02562 * 23 22 21 25 25 N 1.31492 * 125.65043 * 179.67089 * 20 19 18 26 26 C 1.38694 * 120.01837 * 179.97438 * 15 14 13 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 32 32 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 34 34 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 35 35 H 0.97005 * 120.00366 * 359.97438 * 14 13 2 36 36 H 1.08002 * 119.91441 * 359.97438 * 16 15 14 37 37 H 1.07998 * 119.90176 * 180.25316 * 17 16 15 38 38 H 1.07993 * 119.98536 * 179.69453 * 18 17 16 39 39 H 1.08007 * 125.84535 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.09426 * 0.03297 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.7431 1.7750 4.8433 11 1 0.6456 -0.2854 6.1189 12 1 2.7178 0.9682 5.9959 13 6 2.0401 -0.7213 -1.2492 14 7 1.6526 0.0353 -2.4423 15 6 2.0091 -0.4295 -3.7105 16 6 2.7365 -1.6069 -3.8404 17 6 3.0858 -2.0726 -5.0934 18 6 2.7243 -1.3652 -6.2230 19 6 2.0001 -0.1809 -6.1020 20 6 1.6104 0.5800 -7.3152 21 7 1.8941 0.2346 -8.5783 22 6 1.4041 1.1242 -9.4006 23 7 0.7856 2.0738 -8.6759 24 1 0.3297 2.8591 -9.0170 25 7 0.9246 1.7019 -7.3289 26 6 1.6420 0.2863 -4.8403 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 2.9235 -1.8416 4.7319 33 1 3.1264 -0.7995 -1.2055 34 1 1.6055 -1.7198 -1.2951 35 1 1.1484 0.8591 -2.3518 36 1 3.0258 -2.1613 -2.9598 37 1 3.6475 -2.9900 -5.1895 38 1 3.0035 -1.7298 -7.2005 39 1 1.4824 1.1008 -10.4776 40 1 1.0808 1.2037 -4.7415 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589820927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:54 Heat of formation + Delta-G solvation = 95.471918 kcal Electronic energy + Delta-G solvation = -20894.070217 eV Core-core repulsion = 17709.688600 eV Total energy + Delta-G solvation = -3184.381617 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.27495 -39.26647 -36.67403 -34.15215 -33.00704 -32.04585 -32.01829 -30.01126 -28.91097 -26.85556 -25.73034 -24.04206 -23.13818 -22.32150 -21.82322 -20.01433 -19.25733 -18.65992 -16.86795 -16.51817 -15.91293 -15.69879 -15.50636 -14.87653 -14.52392 -14.48886 -14.14149 -13.47851 -13.35380 -13.15556 -12.66206 -12.43479 -12.37714 -12.00232 -11.58294 -11.37255 -11.10300 -10.95662 -10.91795 -10.68145 -10.39770 -10.35053 -10.30615 -10.23765 -9.93843 -9.61087 -9.30765 -9.04063 -8.56465 -8.37880 -7.15814 -6.02280 -4.03926 0.87199 1.62518 1.77392 2.35779 2.88556 3.29582 3.37447 3.40778 3.61059 3.92103 4.09997 4.39187 4.44557 4.67764 5.08235 5.33371 5.33794 5.47297 5.52646 5.67387 5.69651 5.71968 5.92425 5.93888 5.96376 6.14819 6.21620 6.37471 6.41443 6.46423 6.57224 6.69650 6.76322 6.82859 6.96594 7.00882 7.05595 7.59989 7.62063 7.75672 7.78691 7.96644 8.00650 8.39211 9.01970 9.59919 11.09152 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.036286 B = 0.002546 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.464165 B =10996.448172 C =11620.241793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.062 0.938 4 C 0.029 3.971 5 C -0.515 4.515 6 H 0.057 0.943 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.126 3.874 14 N -0.740 5.740 15 C 0.221 3.779 16 C -0.181 4.181 17 C -0.077 4.077 18 C -0.143 4.143 19 C 0.021 3.979 20 C 0.278 3.722 21 N -0.534 5.534 22 C 0.260 3.740 23 N -0.488 5.488 24 H 0.442 0.558 25 N -0.305 5.305 26 C -0.167 4.167 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.046 0.954 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.398 0.602 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.223 0.777 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.378 3.905 -25.831 26.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.115 4.115 3 H 0.080 0.920 4 C -0.008 4.008 5 C -0.553 4.553 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 C 0.002 3.998 14 N -0.368 5.368 15 C 0.115 3.885 16 C -0.205 4.205 17 C -0.095 4.095 18 C -0.166 4.166 19 C 0.018 3.982 20 C -0.002 4.002 21 N -0.261 5.261 22 C -0.039 4.039 23 N -0.206 5.206 24 H 0.287 0.713 25 N -0.134 5.134 26 C -0.192 4.192 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.233 0.767 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.240 0.760 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.309 3.720 -24.981 25.362 hybrid contribution -0.743 1.384 0.385 1.618 sum -3.052 5.104 -24.596 25.305 Atomic orbital electron populations 1.21724 0.95932 1.01106 1.00188 1.21437 0.95639 0.99819 0.94587 0.91974 1.19089 0.96289 0.95562 0.89863 1.21227 1.34831 1.08356 0.90907 0.92524 1.25016 0.95266 0.95096 0.99144 1.69973 1.38902 1.21149 1.23390 0.86561 0.78273 0.80085 0.83235 1.19798 1.21049 1.21053 1.21640 0.99101 0.95173 0.83846 1.45002 1.61215 1.28086 1.02478 1.17717 0.92762 0.92578 0.85433 1.20878 1.03936 0.97326 0.98358 1.20810 0.98217 0.98979 0.91532 1.20832 1.01560 0.95089 0.99070 1.17066 0.99681 0.94210 0.87272 1.22483 0.94588 0.90989 0.92114 1.70535 1.26623 1.28929 1.00038 1.26104 0.92140 0.85553 1.00116 1.48143 1.44611 1.23016 1.04815 0.71289 1.78287 1.23676 1.16596 0.94888 1.20497 1.06560 1.01991 0.90176 0.91798 0.95074 0.93457 0.96277 0.96410 0.93056 0.92472 0.92537 0.76709 0.85575 0.85745 0.85482 0.76033 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.88 37.16 0.33 -2.06 16 2 C -0.10 -1.85 2.37 -90.62 -0.22 -2.07 16 3 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 4 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 5 C -0.51 -14.05 8.41 -34.44 -0.29 -14.34 16 6 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.13 2.09 4.30 -4.04 -0.02 2.07 16 14 N -0.74 -10.93 5.46 -58.67 -0.32 -11.25 16 15 C 0.22 3.20 6.65 -83.83 -0.56 2.64 16 16 C -0.18 -2.49 9.31 -39.32 -0.37 -2.86 16 17 C -0.08 -0.94 10.03 -39.66 -0.40 -1.34 16 18 C -0.14 -1.83 9.68 -39.22 -0.38 -2.21 16 19 C 0.02 0.29 5.87 -104.92 -0.62 -0.32 16 20 C 0.28 3.71 7.77 -156.62 -1.22 2.49 16 21 N -0.53 -6.18 10.82 -12.38 -0.13 -6.31 16 22 C 0.26 1.82 13.11 -90.70 -1.19 0.64 16 23 N -0.49 -3.66 7.44 29.52 0.22 -3.44 16 24 H 0.44 1.51 8.96 -182.34 -1.63 -0.13 16 25 N -0.31 -3.80 12.42 32.10 0.40 -3.40 16 26 C -0.17 -2.35 9.53 -39.04 -0.37 -2.73 16 27 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 28 H 0.03 0.48 7.18 -51.93 -0.37 0.10 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.06 0.97 7.93 -51.93 -0.41 0.56 16 34 H 0.06 0.94 7.96 -51.93 -0.41 0.53 16 35 H 0.40 5.51 7.66 -40.82 -0.31 5.20 16 36 H 0.13 1.69 6.72 -52.49 -0.35 1.34 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.13 1.50 7.83 -52.49 -0.41 1.09 16 39 H 0.22 0.30 8.06 -52.48 -0.42 -0.12 16 40 H 0.12 1.70 7.83 -52.49 -0.41 1.29 16 LS Contribution 339.17 15.07 5.11 5.11 Total: -1.00 -33.28 339.17 -11.24 -44.52 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.72 Total: 2.11 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -5.51 Total: -18.00 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.90 Total: -50.13 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.28 -11.24 -44.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589820927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.990 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds