Wall clock time and date at job start Tue Mar 31 2020 05:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46910 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47081 * 119.99681 * 9 7 5 12 12 H 1.48493 * 109.47178 * 239.99915 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46497 * 109.46926 * 65.00537 * 13 2 1 15 15 C 1.39689 * 120.00206 * 179.97438 * 14 13 2 16 16 C 1.39004 * 120.01527 * 359.72606 * 15 14 13 17 17 C 1.38163 * 120.17022 * 179.71624 * 16 15 14 18 18 C 1.38096 * 120.19911 * 0.55429 * 17 16 15 19 19 C 1.39348 * 120.02457 * 359.72201 * 18 17 16 20 20 C 1.48415 * 120.08318 * 180.02562 * 19 18 17 21 21 N 1.33980 * 125.64904 * 359.97438 * 20 19 18 22 22 C 1.30678 * 109.77689 * 180.02562 * 21 20 19 23 23 N 1.34516 * 108.29599 * 359.97438 * 22 21 20 24 24 H 0.97002 * 126.74332 * 180.02562 * 23 22 21 25 25 N 1.31492 * 125.65043 * 179.67089 * 20 19 18 26 26 C 1.38694 * 120.01837 * 179.97438 * 15 14 13 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 32 32 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 34 34 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 35 35 H 0.97005 * 120.00366 * 359.97438 * 14 13 2 36 36 H 1.08002 * 119.91441 * 359.97438 * 16 15 14 37 37 H 1.07998 * 119.90176 * 180.25316 * 17 16 15 38 38 H 1.07993 * 119.98536 * 179.69453 * 18 17 16 39 39 H 1.08007 * 125.84535 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.09426 * 0.03297 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.7431 1.7750 4.8433 11 1 0.6456 -0.2854 6.1189 12 1 2.7178 0.9682 5.9959 13 6 2.0401 -0.7213 -1.2492 14 7 1.6526 0.0353 -2.4423 15 6 2.0091 -0.4295 -3.7105 16 6 2.7365 -1.6069 -3.8404 17 6 3.0858 -2.0726 -5.0934 18 6 2.7243 -1.3652 -6.2230 19 6 2.0001 -0.1809 -6.1020 20 6 1.6104 0.5800 -7.3152 21 7 1.8941 0.2346 -8.5783 22 6 1.4041 1.1242 -9.4006 23 7 0.7856 2.0738 -8.6759 24 1 0.3297 2.8591 -9.0170 25 7 0.9246 1.7019 -7.3289 26 6 1.6420 0.2863 -4.8403 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 2.9235 -1.8416 4.7319 33 1 3.1264 -0.7995 -1.2055 34 1 1.6055 -1.7198 -1.2951 35 1 1.1484 0.8591 -2.3518 36 1 3.0258 -2.1613 -2.9598 37 1 3.6475 -2.9900 -5.1895 38 1 3.0035 -1.7298 -7.2005 39 1 1.4824 1.1008 -10.4776 40 1 1.0808 1.2037 -4.7415 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589820927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:53 Heat of formation + Delta-G solvation = 76.019158 kcal Electronic energy + Delta-G solvation = -20894.913752 eV Core-core repulsion = 17709.688600 eV Total energy + Delta-G solvation = -3185.225152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.00291 -40.33927 -38.08812 -35.65197 -34.17757 -33.60917 -32.82870 -30.96496 -30.16462 -28.65933 -27.12903 -25.17949 -24.54396 -23.36798 -22.77778 -21.06560 -20.75414 -19.35860 -18.53557 -17.89542 -17.03584 -16.63925 -16.44773 -16.41363 -16.00180 -15.69735 -15.19796 -14.69959 -14.47165 -14.32222 -14.26727 -14.09447 -13.44305 -13.35831 -13.13641 -12.79878 -12.70619 -12.39102 -12.29120 -12.14338 -11.94248 -11.77226 -11.45496 -11.16274 -11.10368 -11.02838 -11.01150 -10.72121 -10.53758 -9.54187 -8.28610 -8.17566 -6.26169 -0.06386 0.70190 0.94834 1.40100 1.41122 1.53218 1.79477 2.02869 2.40259 2.53121 3.07619 3.13064 3.16538 3.67968 4.03128 4.10259 4.17325 4.19935 4.33701 4.41648 4.49731 4.62613 4.74620 4.78854 4.83861 4.95411 5.02033 5.17530 5.22565 5.24179 5.31799 5.41909 5.45574 5.53230 5.61630 5.70469 5.77739 5.87467 5.92335 6.26812 6.27435 6.44769 6.86711 6.90484 7.06208 7.42031 8.94580 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.036286 B = 0.002546 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.464165 B =10996.448172 C =11620.241793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 H 0.061 0.939 4 C 0.034 3.966 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.933 5.933 9 Si 0.959 3.041 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.142 3.858 14 N -0.739 5.739 15 C 0.208 3.792 16 C -0.195 4.195 17 C -0.071 4.071 18 C -0.143 4.143 19 C 0.011 3.989 20 C 0.256 3.744 21 N -0.568 5.568 22 C 0.279 3.721 23 N -0.475 5.475 24 H 0.459 0.541 25 N -0.338 5.338 26 C -0.173 4.173 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.042 0.958 30 H -0.004 1.004 31 H -0.008 1.008 32 H 0.262 0.738 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.403 0.597 36 H 0.126 0.874 37 H 0.151 0.849 38 H 0.137 0.863 39 H 0.279 0.721 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 4.919 -27.884 28.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.104 4.104 3 H 0.080 0.920 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.574 5.574 9 Si 0.785 3.215 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.207 1.207 13 C 0.018 3.982 14 N -0.368 5.368 15 C 0.104 3.896 16 C -0.218 4.218 17 C -0.090 4.090 18 C -0.165 4.165 19 C 0.007 3.993 20 C -0.023 4.023 21 N -0.297 5.297 22 C -0.018 4.018 23 N -0.195 5.195 24 H 0.309 0.691 25 N -0.168 5.168 26 C -0.198 4.198 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.014 0.986 31 H 0.011 0.989 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.238 0.762 36 H 0.144 0.856 37 H 0.169 0.831 38 H 0.155 0.845 39 H 0.294 0.706 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.974 4.770 -27.077 27.654 hybrid contribution -0.540 1.092 0.833 1.476 sum -3.514 5.862 -26.244 27.119 Atomic orbital electron populations 1.21636 0.94652 1.01066 1.00891 1.21202 0.96582 0.99175 0.93429 0.92033 1.18968 0.94594 0.94810 0.92024 1.21639 1.34383 1.08575 0.91982 0.92047 1.25919 0.95332 0.96101 1.02588 1.70100 1.40233 1.22844 1.24223 0.85478 0.78012 0.78886 0.79153 1.18656 1.20614 1.20674 1.21273 0.98552 0.94873 0.83511 1.44762 1.61829 1.28210 1.02019 1.17825 0.93479 0.93148 0.85180 1.21031 1.04325 0.97360 0.99108 1.21096 0.97567 0.99622 0.90678 1.21018 1.01035 0.94746 0.99685 1.17322 0.99535 0.94678 0.87718 1.22449 0.95656 0.91555 0.92676 1.70496 1.28418 1.30953 0.99810 1.27134 0.89384 0.83592 1.01733 1.48074 1.44332 1.23747 1.03341 0.69140 1.78163 1.24155 1.16717 0.97802 1.20498 1.06900 1.02061 0.90307 0.93354 0.92016 0.93865 0.98594 0.98928 0.92937 0.93105 0.92664 0.76186 0.85629 0.83084 0.84477 0.70555 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 8.88 71.98 0.64 -3.82 16 2 C -0.09 -3.31 2.37 -10.79 -0.03 -3.33 16 3 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.03 1.71 4.45 29.85 0.13 1.84 16 5 C -0.53 -29.18 8.41 25.60 0.22 -28.97 16 6 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 8 N -0.93 -56.36 13.29 21.44 0.28 -56.07 16 9 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 13 C 0.14 4.76 4.30 86.38 0.37 5.13 16 14 N -0.74 -21.62 5.46 -339.52 -1.85 -23.47 16 15 C 0.21 6.00 6.65 38.18 0.25 6.25 16 16 C -0.19 -5.28 9.31 22.44 0.21 -5.07 16 17 C -0.07 -1.66 10.03 22.22 0.22 -1.44 16 18 C -0.14 -3.52 9.68 22.50 0.22 -3.30 16 19 C 0.01 0.30 5.87 -20.06 -0.12 0.18 16 20 C 0.26 6.65 7.77 137.47 1.07 7.72 16 21 N -0.57 -12.15 10.82 -193.08 -2.09 -14.23 16 22 C 0.28 3.06 13.11 180.38 2.36 5.42 16 23 N -0.47 -6.03 7.44 -60.52 -0.45 -6.48 16 24 H 0.46 1.94 8.96 -213.10 -1.91 0.03 16 25 N -0.34 -8.09 12.42 -52.35 -0.65 -8.74 16 26 C -0.17 -4.86 9.53 22.62 0.22 -4.65 16 27 H 0.05 1.85 6.95 -2.39 -0.02 1.84 16 28 H 0.06 1.81 7.18 -2.39 -0.02 1.79 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 32 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 33 H 0.05 1.76 7.93 -2.39 -0.02 1.74 16 34 H 0.06 1.86 7.96 -2.39 -0.02 1.84 16 35 H 0.40 10.88 7.66 -92.70 -0.71 10.17 16 36 H 0.13 3.37 6.72 -2.91 -0.02 3.35 16 37 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 38 H 0.14 3.06 7.83 -2.91 -0.02 3.04 16 39 H 0.28 -0.62 8.06 -2.91 -0.02 -0.65 16 40 H 0.12 3.41 7.83 -2.91 -0.02 3.39 16 Total: -1.00 -73.46 339.17 1.94 -71.51 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -1.55 Total: 15.03 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 6.23 Total: -23.69 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -4.76 Total: -109.01 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -73.46 1.94 -71.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589820927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.534 kcal (2) G-P(sol) polarization free energy of solvation -73.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds