Wall clock time and date at job start Tue Mar 31 2020 05:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 120.00149 * 2 1 4 4 N 1.46900 * 109.47237 * 125.14420 * 3 2 1 5 5 C 1.46896 * 111.00115 * 199.18609 * 4 3 2 6 6 C 1.50701 * 109.46891 * 66.04710 * 5 4 3 7 7 H 1.07999 * 120.00001 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00136 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00038 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99828 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47098 * 89.99843 * 10 8 6 12 12 H 1.48502 * 109.47179 * 209.99747 * 10 8 6 13 13 H 1.48500 * 109.47332 * 329.99941 * 10 8 6 14 14 C 1.38323 * 110.99746 * 75.23507 * 4 3 2 15 15 N 1.32989 * 120.84148 * 58.89829 * 14 4 3 16 16 C 1.32073 * 121.03436 * 180.02562 * 15 14 4 17 17 N 1.31556 * 122.71789 * 0.23216 * 16 15 14 18 18 C 1.33200 * 120.70906 * 359.53397 * 17 16 15 19 19 N 1.36778 * 134.30408 * 180.12963 * 18 17 16 20 20 H 0.97000 * 124.98793 * 0.31407 * 19 18 17 21 21 C 1.37100 * 110.02153 * 180.29289 * 19 18 17 22 22 C 1.50707 * 125.09071 * 180.02562 * 21 19 18 23 23 C 1.34295 * 109.81375 * 0.02562 * 21 19 18 24 24 C 1.50700 * 126.59630 * 180.02562 * 23 21 19 25 25 C 1.40308 * 120.83769 * 238.92022 * 14 4 3 26 26 H 1.08000 * 119.99876 * 5.00069 * 1 2 3 27 27 H 1.07995 * 119.99896 * 184.99937 * 1 2 3 28 28 H 1.08000 * 120.00196 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46746 * 5.14554 * 3 2 1 30 30 H 1.08991 * 109.46743 * 245.14745 * 3 2 1 31 31 H 1.08997 * 109.47240 * 186.04875 * 5 4 3 32 32 H 1.09000 * 109.47363 * 306.05246 * 5 4 3 33 33 H 0.96999 * 119.99564 * 179.97438 * 9 8 6 34 34 H 1.08004 * 118.64423 * 179.97438 * 16 15 14 35 35 H 1.09000 * 109.47202 * 89.97692 * 22 21 19 36 36 H 1.08995 * 109.47137 * 209.97517 * 22 21 19 37 37 H 1.09000 * 109.47388 * 329.97616 * 22 21 19 38 38 H 1.09001 * 109.47458 * 86.18533 * 24 23 21 39 39 H 1.09002 * 109.46765 * 206.18732 * 24 23 21 40 40 H 1.09001 * 109.47099 * 326.17978 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9988 1.3306 1.1325 5 6 3.4102 2.7058 1.4447 6 6 2.2208 3.4846 1.9445 7 1 1.2559 3.0058 2.0227 8 6 2.3646 4.8083 2.3028 9 7 1.3267 5.4878 2.7394 10 14 4.0337 5.6363 2.1682 11 1 4.1779 6.2432 0.8205 12 1 4.1456 6.6957 3.2028 13 1 5.1044 4.6282 2.3741 14 6 4.0982 0.5283 0.8855 15 7 4.8828 0.7514 -0.1648 16 6 5.9332 -0.0126 -0.4046 17 7 6.2637 -1.0284 0.3632 18 6 5.5422 -1.3289 1.4418 19 7 5.6269 -2.2910 2.4103 20 1 6.3134 -2.9747 2.4565 21 6 4.5994 -2.1468 3.3064 22 6 4.3684 -3.0258 4.5086 23 6 3.8295 -1.1049 2.9524 24 6 2.6008 -0.6105 3.6713 25 6 4.4135 -0.5417 1.7366 26 1 -0.5400 0.9318 -0.0815 27 1 -0.5400 -0.9317 0.0815 28 1 1.8500 -0.9353 0.0004 29 1 1.3588 2.1316 0.0922 30 1 2.6192 1.4038 -0.9324 31 1 4.1823 2.6883 2.2139 32 1 3.8036 3.1804 0.5458 33 1 1.4281 6.4189 2.9919 34 1 6.5438 0.2031 -1.2690 35 1 4.8972 -2.6129 5.3676 36 1 3.3014 -3.0708 4.7261 37 1 4.7396 -4.0295 4.3015 38 1 2.8951 0.0831 4.4590 39 1 1.9465 -0.1007 2.9640 40 1 2.0720 -1.4563 4.1108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591944328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:22 Heat of formation + Delta-G solvation = 114.271954 kcal Electronic energy + Delta-G solvation = -22916.656936 eV Core-core repulsion = 19733.090549 eV Total energy + Delta-G solvation = -3183.566387 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.75109 -38.97466 -37.12433 -33.54850 -33.06243 -32.28301 -31.60530 -31.02221 -28.33016 -27.56729 -26.00484 -24.96942 -23.03167 -22.43330 -20.82830 -19.50000 -18.84232 -18.34991 -16.94137 -16.51006 -15.91829 -15.63825 -15.02200 -14.73533 -14.21148 -14.17306 -13.73962 -13.46035 -13.26264 -12.90455 -12.73149 -12.49923 -12.37628 -12.16907 -12.11836 -12.00666 -11.55618 -11.30523 -10.89311 -10.77787 -10.49162 -10.41590 -9.97238 -9.83720 -9.41986 -9.02871 -8.89958 -8.76727 -8.61116 -7.80277 -7.62463 -6.08879 -4.06979 1.03497 1.59630 2.66824 2.71431 2.74714 3.28866 3.36061 3.40633 4.14929 4.25731 4.40532 4.49800 4.67747 4.78043 5.02612 5.19458 5.24668 5.37164 5.38276 5.43441 5.56984 5.66575 5.72608 5.80992 6.08535 6.19808 6.25647 6.31332 6.37131 6.45806 6.51224 6.78916 6.86322 6.94068 7.00492 7.05257 7.14807 7.23974 7.49920 7.63278 7.67056 7.98784 8.50645 8.57473 8.98286 9.51959 11.03425 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.014268 B = 0.005993 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.902823 B = 4670.766761 C = 4819.462658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 C 0.085 3.915 4 N -0.472 5.472 5 C 0.173 3.827 6 C -0.511 4.511 7 H 0.086 0.914 8 C 0.075 3.925 9 N -0.895 5.895 10 Si 0.870 3.130 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.269 1.269 14 C 0.420 3.580 15 N -0.573 5.573 16 C 0.323 3.677 17 N -0.551 5.551 18 C 0.318 3.682 19 N -0.572 5.572 20 H 0.416 0.584 21 C 0.048 3.952 22 C -0.084 4.084 23 C -0.103 4.103 24 C -0.082 4.082 25 C -0.182 4.182 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.027 0.973 32 H 0.003 0.997 33 H 0.265 0.735 34 H 0.193 0.807 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.316 -16.484 -0.234 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.155 4.155 3 C -0.041 4.041 4 N -0.196 5.196 5 C 0.049 3.951 6 C -0.549 4.549 7 H 0.104 0.896 8 C -0.128 4.128 9 N -0.534 5.534 10 Si 0.697 3.303 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.193 1.193 14 C 0.178 3.822 15 N -0.294 5.294 16 C 0.031 3.969 17 N -0.272 5.272 18 C 0.077 3.923 19 N -0.181 5.181 20 H 0.253 0.747 21 C -0.057 4.057 22 C -0.142 4.142 23 C -0.111 4.111 24 C -0.139 4.139 25 C -0.193 4.193 26 H 0.118 0.882 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.021 0.979 33 H 0.074 0.926 34 H 0.209 0.791 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.663 -16.412 -0.470 17.368 hybrid contribution 1.419 0.333 -0.080 1.460 sum 7.083 -16.078 -0.550 17.578 Atomic orbital electron populations 1.23715 0.95710 1.01547 1.01805 1.22854 0.95954 0.97968 0.98723 1.21299 0.95240 0.96393 0.91141 1.60098 1.08913 1.13270 1.37275 1.20224 0.97690 0.81643 0.95527 1.20927 0.95660 0.94836 1.43476 0.89600 1.24801 0.96234 0.97049 0.94679 1.69875 1.29550 1.09715 1.44247 0.86938 0.85360 0.79717 0.78242 1.20063 1.21070 1.19341 1.20060 0.88374 0.88289 0.85449 1.68718 1.07659 1.30982 1.22043 1.24359 0.91299 0.85259 0.95958 1.67347 1.33062 1.21397 1.05396 1.18295 0.92860 0.90645 0.90461 1.41263 1.26792 1.28132 1.21879 0.74693 1.20142 0.90537 1.00396 0.94586 1.20396 1.03783 0.97039 0.92945 1.20061 0.99403 0.96109 0.95545 1.20253 0.93502 0.99996 1.00171 1.20170 0.99405 0.99569 1.00197 0.88203 0.89120 0.88995 0.87565 0.93131 0.95475 0.97899 0.92554 0.79062 0.90515 0.89420 0.91627 0.91382 0.89073 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.88 14.31 29.02 0.42 -2.46 16 2 C -0.14 -2.31 9.42 -36.02 -0.34 -2.65 16 3 C 0.09 1.68 5.22 -4.97 -0.03 1.65 16 4 N -0.47 -10.07 3.53 -175.60 -0.62 -10.69 16 5 C 0.17 4.26 3.62 -4.98 -0.02 4.24 16 6 C -0.51 -14.00 8.79 -34.44 -0.30 -14.31 16 7 H 0.09 2.51 7.55 -52.49 -0.40 2.12 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 10 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.61 6.54 56.52 0.37 -6.24 16 14 C 0.42 8.45 4.88 -154.73 -0.76 7.69 16 15 N -0.57 -11.09 9.62 -13.67 -0.13 -11.22 16 16 C 0.32 5.32 12.23 -92.12 -1.13 4.20 16 17 N -0.55 -9.20 10.47 -13.89 -0.15 -9.34 16 18 C 0.32 5.32 8.48 -155.85 -1.32 4.00 16 19 N -0.57 -7.41 6.03 -8.42 -0.05 -7.46 16 20 H 0.42 4.01 8.96 -40.82 -0.37 3.65 16 21 C 0.05 0.61 7.10 -81.62 -0.58 0.03 16 22 C -0.08 -0.69 10.18 36.01 0.37 -0.32 16 23 C -0.10 -1.64 6.31 -102.83 -0.65 -2.29 16 24 C -0.08 -1.25 10.06 36.01 0.36 -0.89 16 25 C -0.18 -3.36 6.35 -105.00 -0.67 -4.03 16 26 H 0.10 1.53 7.86 -52.49 -0.41 1.12 16 27 H 0.09 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.09 1.56 8.01 -52.49 -0.42 1.14 16 29 H 0.11 2.26 6.24 -51.93 -0.32 1.94 16 30 H 0.05 1.00 7.45 -51.93 -0.39 0.61 16 31 H 0.03 0.70 7.11 -51.93 -0.37 0.34 16 32 H 0.00 0.08 7.55 -51.93 -0.39 -0.31 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.19 2.39 8.06 -52.48 -0.42 1.97 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.66 7.13 -51.93 -0.37 0.28 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.09 1.62 7.30 -51.93 -0.38 1.24 16 40 H 0.05 0.65 7.19 -51.93 -0.37 0.28 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -31.92 335.48 -10.00 -41.91 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.47 Total: 3.83 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -4.74 Total: -3.10 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -0.17 Total: -64.60 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.92 -10.00 -41.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591944328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.186 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds