Wall clock time and date at job start Tue Mar 31 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46842 * 2 1 4 4 H 1.09000 * 109.47133 * 180.97618 * 3 2 1 5 5 C 1.50701 * 109.47545 * 300.98255 * 3 2 1 6 6 H 1.07994 * 119.99913 * 119.99762 * 5 3 2 7 7 C 1.37877 * 119.99507 * 300.00060 * 5 3 2 8 8 N 1.31508 * 120.00488 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99546 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47315 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47001 * 119.99986 * 9 7 5 12 12 H 1.48499 * 109.47082 * 239.99645 * 9 7 5 13 13 N 1.46903 * 109.46916 * 60.98358 * 3 2 1 14 14 C 1.46901 * 111.00378 * 83.27379 * 13 3 2 15 15 C 1.50701 * 109.47465 * 184.99278 * 14 13 3 16 16 C 1.35366 * 126.97240 * 95.76411 * 15 14 13 17 17 N 1.33781 * 106.53503 * 179.88558 * 16 15 14 18 18 N 1.28604 * 109.06060 * 0.39135 * 17 16 15 19 19 N 1.28732 * 110.23261 * 359.75580 * 18 17 16 20 20 C 1.40243 * 125.93935 * 180.02562 * 19 18 17 21 21 C 1.38826 * 120.06660 * 135.91205 * 20 19 18 22 22 C 1.38127 * 119.93048 * 179.70013 * 21 20 19 23 23 C 1.38269 * 120.06795 * 0.56472 * 22 21 20 24 24 C 1.38278 * 120.13209 * 359.73465 * 23 22 21 25 25 C 1.38120 * 120.06185 * 359.96867 * 24 23 22 26 26 H 1.08999 * 109.47349 * 55.61573 * 1 2 3 27 27 H 1.08999 * 109.47094 * 175.61224 * 1 2 3 28 28 H 1.09000 * 109.47502 * 295.60984 * 1 2 3 29 29 H 1.09001 * 109.47460 * 240.00642 * 2 1 3 30 30 H 1.08994 * 109.47273 * 119.99902 * 2 1 3 31 31 H 0.96999 * 120.00569 * 179.97438 * 8 7 5 32 32 H 1.00899 * 110.99815 * 207.22298 * 13 3 2 33 33 H 1.09002 * 109.46737 * 304.99109 * 14 13 3 34 34 H 1.08997 * 109.47199 * 64.99117 * 14 13 3 35 35 H 1.08004 * 126.73420 * 359.97438 * 16 15 14 36 36 H 1.07992 * 120.03078 * 359.97305 * 21 20 19 37 37 H 1.08002 * 119.96091 * 180.31910 * 22 21 20 38 38 H 1.08001 * 119.93861 * 179.74569 * 23 22 21 39 39 H 1.08001 * 119.96914 * 179.97438 * 24 23 22 40 40 H 1.08007 * 120.03219 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1297 1.4426 -0.0175 5 6 1.5178 2.1600 -1.2181 6 1 0.8986 3.0374 -1.1039 7 6 1.8306 1.6961 -2.4782 8 7 2.5850 0.6279 -2.6172 9 14 1.1829 2.5850 -3.9880 10 1 0.3636 3.7487 -3.5639 11 1 2.3244 3.0568 -4.8124 12 1 0.3452 1.6558 -4.7881 13 7 1.5696 2.1281 1.2112 14 6 2.4491 1.8427 2.3528 15 6 1.8700 2.4599 3.5997 16 6 1.0942 1.8491 4.5257 17 7 0.8145 2.7696 5.4552 18 7 1.3712 3.8813 5.1262 19 7 2.0159 3.7462 4.0201 20 6 2.7427 4.7496 3.3632 21 6 3.9982 4.4702 2.8408 22 6 4.7090 5.4590 2.1888 23 6 4.1762 6.7290 2.0664 24 6 2.9286 7.0120 2.5911 25 6 2.2105 6.0257 3.2388 26 1 -0.3634 0.5804 -0.8481 27 1 -0.3633 -1.0246 -0.0786 28 1 -0.3634 0.4442 0.9267 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.8048 0.3014 -3.5038 32 1 1.4895 3.1218 1.0561 33 1 2.5326 0.7641 2.4863 34 1 3.4369 2.2631 2.1644 35 1 0.7666 0.8200 4.5167 36 1 4.4168 3.4797 2.9402 37 1 5.6836 5.2408 1.7777 38 1 4.7356 7.5016 1.5598 39 1 2.5151 8.0050 2.4944 40 1 1.2358 6.2471 3.6481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593615019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:59 Heat of formation + Delta-G solvation = 129.648562 kcal Electronic energy + Delta-G solvation = -22551.976258 eV Core-core repulsion = 19369.076651 eV Total energy + Delta-G solvation = -3182.899607 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.24329 -39.34297 -36.58228 -34.54324 -33.31196 -31.53303 -31.08529 -30.03275 -29.82489 -26.80983 -24.76837 -23.85791 -23.25101 -23.01004 -21.75461 -20.58936 -19.15279 -18.08678 -16.62566 -16.56728 -16.37995 -15.19384 -14.97152 -14.79750 -14.36071 -14.18245 -13.82656 -13.68711 -13.52813 -13.05283 -12.90380 -12.51147 -12.02223 -11.88983 -11.68927 -11.54175 -11.27251 -11.00696 -10.92841 -10.77236 -10.52146 -10.46820 -10.17218 -9.83290 -9.47664 -9.22695 -9.03332 -8.85648 -8.80415 -8.55888 -7.43294 -6.10891 -4.16199 0.70718 1.11124 1.87610 2.37870 2.74487 3.22388 3.31433 3.35009 3.47613 4.32772 4.50298 4.58948 4.66592 4.85596 4.92130 5.11911 5.19968 5.20230 5.23330 5.36414 5.40620 5.61942 5.73043 5.91443 6.01347 6.09062 6.15982 6.23633 6.37114 6.46634 6.49648 6.60899 6.78137 6.95190 7.14225 7.17088 7.38508 7.65331 7.68518 7.73785 8.12372 8.23516 8.48929 8.62023 8.90671 9.48876 10.95152 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.014146 B = 0.005740 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.853570 B = 4876.585759 C = 6205.412603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.675 5.675 14 C 0.123 3.877 15 C 0.014 3.986 16 C -0.039 4.039 17 N -0.268 5.268 18 N -0.090 5.090 19 N -0.248 5.248 20 C 0.123 3.877 21 C -0.107 4.107 22 C -0.099 4.099 23 C -0.107 4.107 24 C -0.105 4.105 25 C -0.094 4.094 26 H 0.056 0.944 27 H 0.014 0.986 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.011 0.989 31 H 0.261 0.739 32 H 0.330 0.670 33 H 0.097 0.903 34 H 0.038 0.962 35 H 0.192 0.808 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.294 7.929 8.821 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.307 5.307 14 C -0.009 4.009 15 C -0.115 4.115 16 C -0.195 4.195 17 N -0.135 5.135 18 N -0.067 5.067 19 N -0.037 5.037 20 C 0.033 3.967 21 C -0.127 4.127 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.114 4.114 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.115 0.885 34 H 0.056 0.944 35 H 0.209 0.791 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.489 8.236 10.004 13.420 hybrid contribution 0.688 0.164 -2.035 2.154 sum 4.176 8.400 7.969 12.309 Atomic orbital electron populations 1.21452 0.97348 0.97554 1.01425 1.21452 0.95241 0.97951 0.99560 1.19170 0.93150 0.91629 0.84908 0.98080 1.21136 1.31733 1.12032 0.90130 0.92303 1.24851 0.94979 0.94975 0.98852 1.69877 1.36936 1.22848 1.22949 0.86533 0.78713 0.79798 0.82960 1.19793 1.21087 1.20899 1.60742 1.49803 1.14716 1.05429 1.20596 0.93742 1.00211 0.86315 1.22743 1.04012 0.84115 1.00676 1.23322 1.01804 1.01622 0.92729 1.75013 1.18054 0.96369 1.24046 1.78327 1.09428 1.19716 0.99264 1.44575 1.34304 1.08350 1.16498 1.17524 0.91970 0.87776 0.99455 1.21161 0.92231 1.00839 0.98469 1.21063 1.00283 0.92523 0.97942 1.21341 0.95677 0.96980 0.98495 1.21075 0.94666 0.99199 0.97432 1.21044 1.00570 0.91126 0.98697 0.92455 0.96655 0.93954 0.89386 0.97025 0.92914 0.85257 0.88499 0.94442 0.79095 0.84701 0.84622 0.85081 0.84772 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.53 37.15 0.35 -2.26 16 2 C -0.10 -2.36 5.55 -26.73 -0.15 -2.51 16 3 C 0.22 5.05 2.29 -68.86 -0.16 4.89 16 4 H 0.00 0.04 7.88 -51.93 -0.41 -0.37 16 5 C -0.51 -13.10 7.21 -34.44 -0.25 -13.34 16 6 H 0.06 1.53 7.64 -52.49 -0.40 1.13 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -23.99 11.33 55.43 0.63 -23.37 16 9 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.68 -13.33 5.62 -109.22 -0.61 -13.95 16 14 C 0.12 2.03 5.58 -4.98 -0.03 2.00 16 15 C 0.01 0.23 6.38 -81.72 -0.52 -0.29 16 16 C -0.04 -0.62 11.99 -17.73 -0.21 -0.83 16 17 N -0.27 -4.72 12.39 30.24 0.37 -4.35 16 18 N -0.09 -1.57 12.97 60.35 0.78 -0.78 16 19 N -0.25 -3.99 3.46 -6.78 -0.02 -4.01 16 20 C 0.12 1.75 6.14 -83.57 -0.51 1.23 16 21 C -0.11 -1.36 8.60 -39.40 -0.34 -1.70 16 22 C -0.10 -1.06 10.04 -39.61 -0.40 -1.46 16 23 C -0.11 -1.02 10.04 -39.56 -0.40 -1.42 16 24 C -0.11 -1.06 10.04 -39.61 -0.40 -1.46 16 25 C -0.09 -1.19 9.81 -39.41 -0.39 -1.57 16 26 H 0.06 1.35 7.03 -51.93 -0.37 0.99 16 27 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.04 0.88 7.77 -51.93 -0.40 0.47 16 29 H 0.09 2.25 6.10 -51.93 -0.32 1.93 16 30 H 0.01 0.23 7.25 -51.93 -0.38 -0.14 16 31 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.33 6.72 8.31 -39.29 -0.33 6.39 16 33 H 0.10 1.55 7.20 -51.93 -0.37 1.18 16 34 H 0.04 0.60 5.25 -51.93 -0.27 0.32 16 35 H 0.19 2.52 8.06 -52.48 -0.42 2.09 16 36 H 0.14 1.66 6.24 -52.49 -0.33 1.33 16 37 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 332.55 15.07 5.01 5.01 Total: -1.00 -28.91 332.55 -7.59 -36.51 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.24 Total: 6.56 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -3.49 Total: -17.09 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 1.15 Total: -46.46 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.91 -7.59 -36.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593615019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.154 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds