Wall clock time and date at job start Tue Mar 31 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46842 * 2 1 4 4 H 1.09000 * 109.47133 * 180.97618 * 3 2 1 5 5 C 1.50701 * 109.47545 * 300.98255 * 3 2 1 6 6 H 1.07994 * 119.99913 * 119.99762 * 5 3 2 7 7 C 1.37877 * 119.99507 * 300.00060 * 5 3 2 8 8 N 1.31508 * 120.00488 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99546 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47315 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47001 * 119.99986 * 9 7 5 12 12 H 1.48499 * 109.47082 * 239.99645 * 9 7 5 13 13 N 1.46903 * 109.46916 * 60.98358 * 3 2 1 14 14 C 1.46901 * 111.00378 * 83.27379 * 13 3 2 15 15 C 1.50701 * 109.47465 * 184.99278 * 14 13 3 16 16 C 1.35366 * 126.97240 * 95.76411 * 15 14 13 17 17 N 1.33781 * 106.53503 * 179.88558 * 16 15 14 18 18 N 1.28604 * 109.06060 * 0.39135 * 17 16 15 19 19 N 1.28732 * 110.23261 * 359.75580 * 18 17 16 20 20 C 1.40243 * 125.93935 * 180.02562 * 19 18 17 21 21 C 1.38826 * 120.06660 * 135.91205 * 20 19 18 22 22 C 1.38127 * 119.93048 * 179.70013 * 21 20 19 23 23 C 1.38269 * 120.06795 * 0.56472 * 22 21 20 24 24 C 1.38278 * 120.13209 * 359.73465 * 23 22 21 25 25 C 1.38120 * 120.06185 * 359.96867 * 24 23 22 26 26 H 1.08999 * 109.47349 * 55.61573 * 1 2 3 27 27 H 1.08999 * 109.47094 * 175.61224 * 1 2 3 28 28 H 1.09000 * 109.47502 * 295.60984 * 1 2 3 29 29 H 1.09001 * 109.47460 * 240.00642 * 2 1 3 30 30 H 1.08994 * 109.47273 * 119.99902 * 2 1 3 31 31 H 0.96999 * 120.00569 * 179.97438 * 8 7 5 32 32 H 1.00899 * 110.99815 * 207.22298 * 13 3 2 33 33 H 1.09002 * 109.46737 * 304.99109 * 14 13 3 34 34 H 1.08997 * 109.47199 * 64.99117 * 14 13 3 35 35 H 1.08004 * 126.73420 * 359.97438 * 16 15 14 36 36 H 1.07992 * 120.03078 * 359.97305 * 21 20 19 37 37 H 1.08002 * 119.96091 * 180.31910 * 22 21 20 38 38 H 1.08001 * 119.93861 * 179.74569 * 23 22 21 39 39 H 1.08001 * 119.96914 * 179.97438 * 24 23 22 40 40 H 1.08007 * 120.03219 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1297 1.4426 -0.0175 5 6 1.5178 2.1600 -1.2181 6 1 0.8986 3.0374 -1.1039 7 6 1.8306 1.6961 -2.4782 8 7 2.5850 0.6279 -2.6172 9 14 1.1829 2.5850 -3.9880 10 1 0.3636 3.7487 -3.5639 11 1 2.3244 3.0568 -4.8124 12 1 0.3452 1.6558 -4.7881 13 7 1.5696 2.1281 1.2112 14 6 2.4491 1.8427 2.3528 15 6 1.8700 2.4599 3.5997 16 6 1.0942 1.8491 4.5257 17 7 0.8145 2.7696 5.4552 18 7 1.3712 3.8813 5.1262 19 7 2.0159 3.7462 4.0201 20 6 2.7427 4.7496 3.3632 21 6 3.9982 4.4702 2.8408 22 6 4.7090 5.4590 2.1888 23 6 4.1762 6.7290 2.0664 24 6 2.9286 7.0120 2.5911 25 6 2.2105 6.0257 3.2388 26 1 -0.3634 0.5804 -0.8481 27 1 -0.3633 -1.0246 -0.0786 28 1 -0.3634 0.4442 0.9267 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.8048 0.3014 -3.5038 32 1 1.4895 3.1218 1.0561 33 1 2.5326 0.7641 2.4863 34 1 3.4369 2.2631 2.1644 35 1 0.7666 0.8200 4.5167 36 1 4.4168 3.4797 2.9402 37 1 5.6836 5.2408 1.7777 38 1 4.7356 7.5016 1.5598 39 1 2.5151 8.0050 2.4944 40 1 1.2358 6.2471 3.6481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593615019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:59 Heat of formation + Delta-G solvation = 112.890035 kcal Electronic energy + Delta-G solvation = -22552.702962 eV Core-core repulsion = 19369.076651 eV Total energy + Delta-G solvation = -3183.626311 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.48462 -40.25228 -38.26270 -35.70998 -34.93115 -33.18442 -32.10320 -31.50320 -30.87481 -28.54415 -26.31323 -25.11981 -24.83592 -24.09217 -22.86598 -21.73588 -20.93944 -19.24926 -18.37035 -17.59868 -17.49824 -16.95444 -16.23254 -16.03494 -15.62173 -15.55360 -15.22467 -14.93267 -14.69234 -14.51905 -14.11417 -13.93889 -13.68615 -13.41843 -12.89565 -12.78606 -12.64130 -12.59525 -12.40796 -12.35104 -12.14383 -11.97329 -11.63864 -11.57176 -11.29704 -10.79780 -10.54516 -10.27236 -10.10475 -9.79768 -9.07064 -8.09600 -6.20209 -0.29361 0.24303 0.71234 1.24947 1.39886 1.44355 1.47191 1.53369 2.42872 2.60010 3.20162 3.28040 3.58667 3.69846 3.77770 3.79230 4.05717 4.13192 4.19503 4.32298 4.40485 4.55818 4.60123 4.68456 4.77261 4.82281 4.90835 4.98340 5.10779 5.25123 5.26580 5.32254 5.40003 5.40704 5.55870 5.58834 5.71491 5.82307 5.89647 5.91394 6.29582 6.41523 6.70299 6.96740 7.35023 7.48015 8.95466 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.014146 B = 0.005740 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.853570 B = 4876.585759 C = 6205.412603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C 0.228 3.772 4 H -0.024 1.024 5 C -0.520 4.520 6 H 0.051 0.949 7 C 0.024 3.976 8 N -0.912 5.912 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.284 1.284 13 N -0.672 5.672 14 C 0.131 3.869 15 C 0.005 3.995 16 C -0.037 4.037 17 N -0.291 5.291 18 N -0.107 5.107 19 N -0.240 5.240 20 C 0.088 3.912 21 C -0.120 4.120 22 C -0.103 4.103 23 C -0.099 4.099 24 C -0.101 4.101 25 C -0.108 4.108 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.326 0.674 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.217 0.783 36 H 0.132 0.868 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.648 9.071 8.483 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.139 4.139 3 C 0.120 3.880 4 H -0.006 1.006 5 C -0.559 4.559 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.551 5.551 9 Si 0.773 3.227 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.210 1.210 13 N -0.303 5.303 14 C -0.001 4.001 15 C -0.125 4.125 16 C -0.194 4.194 17 N -0.157 5.157 18 N -0.084 5.084 19 N -0.029 5.029 20 C -0.001 4.001 21 C -0.140 4.140 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.128 4.128 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.143 0.857 33 H 0.123 0.877 34 H 0.063 0.937 35 H 0.233 0.767 36 H 0.149 0.851 37 H 0.176 0.824 38 H 0.183 0.817 39 H 0.182 0.818 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.841 9.398 9.690 14.034 hybrid contribution 0.645 -0.114 -1.918 2.027 sum 4.486 9.284 7.772 12.912 Atomic orbital electron populations 1.21321 0.96376 0.98298 1.00673 1.21344 0.95990 0.97484 0.99081 1.18922 0.91436 0.92059 0.85619 1.00638 1.21358 1.31342 1.11855 0.91313 0.93122 1.25481 0.95280 0.95609 1.01203 1.69987 1.37875 1.23872 1.23375 0.85682 0.78171 0.78764 0.80077 1.19575 1.20633 1.20963 1.60638 1.50523 1.14129 1.04982 1.20537 0.93536 1.00753 0.85225 1.22674 1.04633 0.84502 1.00697 1.23792 1.01048 1.02484 0.92053 1.74992 1.18957 0.96801 1.24915 1.78269 1.10162 1.19961 1.00041 1.44731 1.33539 1.08706 1.15938 1.17898 0.92908 0.88172 1.01142 1.21276 0.92103 1.01454 0.99200 1.21431 1.01010 0.92568 0.97178 1.21792 0.95404 0.97253 0.97214 1.21463 0.94631 0.99824 0.96025 1.21202 1.00890 0.91214 0.99524 0.94870 0.94886 0.93147 0.92194 0.95109 0.92960 0.85738 0.87707 0.93654 0.76685 0.85066 0.82439 0.81675 0.81814 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.62 9.53 71.98 0.69 -3.94 16 2 C -0.10 -4.52 5.55 30.59 0.17 -4.35 16 3 C 0.23 10.51 2.29 44.17 0.10 10.61 16 4 H -0.02 -1.21 7.88 -2.39 -0.02 -1.23 16 5 C -0.52 -26.63 7.21 25.60 0.18 -26.44 16 6 H 0.05 2.63 7.64 -2.91 -0.02 2.61 16 7 C 0.02 1.25 5.30 84.66 0.45 1.70 16 8 N -0.91 -49.51 11.33 21.45 0.24 -49.27 16 9 Si 0.95 41.80 29.54 68.60 2.03 43.83 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 N -0.67 -26.23 5.62 -499.45 -2.81 -29.04 16 14 C 0.13 4.23 5.58 85.56 0.48 4.70 16 15 C 0.01 0.17 6.38 41.23 0.26 0.44 16 16 C -0.04 -1.15 11.99 83.73 1.00 -0.14 16 17 N -0.29 -10.21 12.39 -58.24 -0.72 -10.93 16 18 N -0.11 -3.76 12.97 37.02 0.48 -3.28 16 19 N -0.24 -7.71 3.46 -175.35 -0.61 -8.32 16 20 C 0.09 2.49 6.14 38.08 0.23 2.72 16 21 C -0.12 -2.98 8.60 22.38 0.19 -2.79 16 22 C -0.10 -1.99 10.04 22.25 0.22 -1.77 16 23 C -0.10 -1.60 10.04 22.29 0.22 -1.37 16 24 C -0.10 -1.81 10.04 22.25 0.22 -1.58 16 25 C -0.11 -2.65 9.81 22.38 0.22 -2.43 16 26 H 0.03 1.53 7.03 -2.39 -0.02 1.52 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 2.02 7.77 -2.39 -0.02 2.00 16 29 H 0.06 3.07 6.10 -2.39 -0.01 3.05 16 30 H 0.03 1.24 7.25 -2.39 -0.02 1.22 16 31 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 32 H 0.33 13.23 8.31 -89.70 -0.75 12.48 16 33 H 0.10 3.22 7.20 -2.39 -0.02 3.21 16 34 H 0.05 1.42 5.25 -2.39 -0.01 1.41 16 35 H 0.22 5.31 8.06 -2.91 -0.02 5.29 16 36 H 0.13 3.22 6.24 -2.91 -0.02 3.20 16 37 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 38 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 40 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -61.91 332.55 3.58 -58.33 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.31 Total: 23.31 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 4.65 Total: -24.64 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -3.41 Total: -100.83 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -61.91 3.58 -58.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593615019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.222 kcal (2) G-P(sol) polarization free energy of solvation -61.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds