Wall clock time and date at job start Tue Mar 31 2020 05:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38356 * 120.34182 * 2 1 4 4 C 1.38696 * 118.59854 * 180.26569 * 3 2 1 5 5 C 1.39300 * 119.21871 * 359.74672 * 4 3 2 6 6 C 1.43194 * 119.69518 * 179.97438 * 5 4 3 7 7 N 4.79715 * 134.88437 * 0.28561 * 3 1 2 8 8 N 1.32908 * 120.60793 * 359.97438 * 5 4 3 9 9 C 1.32142 * 121.51685 * 0.02562 * 8 5 4 10 10 N 1.38976 * 119.63204 * 179.97438 * 9 8 5 11 11 C 1.46498 * 120.00098 * 359.72485 * 10 9 8 12 12 C 1.53035 * 109.45965 * 275.30286 * 11 10 9 13 13 C 1.53195 * 109.31441 * 178.60426 * 12 11 10 14 14 N 1.46930 * 108.76562 * 54.64851 * 13 12 11 15 15 C 1.36935 * 120.62159 * 126.36723 * 14 13 12 16 16 H 1.08000 * 120.00429 * 331.85600 * 15 14 13 17 17 C 1.38817 * 119.99460 * 151.86741 * 15 14 13 18 18 N 1.31619 * 120.00048 * 343.05674 * 17 15 14 19 19 Si 1.86799 * 120.00008 * 163.06496 * 17 15 14 20 20 H 1.48497 * 109.47257 * 89.99677 * 19 17 15 21 21 H 1.48505 * 109.47113 * 209.99371 * 19 17 15 22 22 H 1.48499 * 109.47259 * 329.99360 * 19 17 15 23 23 C 1.46924 * 118.74206 * 306.38978 * 14 13 12 24 24 C 1.53040 * 109.46074 * 155.24599 * 11 10 9 25 25 H 1.09007 * 109.47372 * 270.23775 * 1 2 3 26 26 H 1.09006 * 109.46755 * 30.23421 * 1 2 3 27 27 H 1.08998 * 109.47580 * 150.23547 * 1 2 3 28 28 H 1.08001 * 120.70688 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.39471 * 179.76788 * 4 3 2 30 30 H 0.97001 * 119.99853 * 179.97438 * 10 9 8 31 31 H 1.09003 * 109.46195 * 35.27817 * 11 10 9 32 32 H 1.09002 * 109.49646 * 298.55977 * 12 11 10 33 33 H 1.08991 * 109.50206 * 58.65835 * 12 11 10 34 34 H 1.09006 * 109.59189 * 294.86767 * 13 12 11 35 35 H 1.08995 * 109.70518 * 174.50748 * 13 12 11 36 36 H 0.96997 * 120.00302 * 180.02562 * 18 17 15 37 37 H 1.09004 * 109.58531 * 293.82237 * 23 14 13 38 38 H 1.08992 * 109.70210 * 173.46507 * 23 14 13 39 39 H 1.09005 * 109.49810 * 301.33750 * 24 11 10 40 40 H 1.09003 * 109.49756 * 61.43069 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1941 0.0000 4 6 3.5922 1.1519 -0.0056 5 6 4.2349 -0.0840 -0.0057 6 6 5.6658 -0.1395 -0.0121 7 7 6.8010 -0.1836 -0.0169 8 7 3.5323 -1.2122 0.0000 9 6 2.2109 -1.2029 0.0055 10 7 1.5154 -2.4061 0.0109 11 6 2.2471 -3.6752 0.0044 12 6 2.6054 -4.0498 -1.4355 13 6 3.4005 -5.3593 -1.4356 14 7 2.6256 -6.3828 -0.7209 15 6 2.3493 -7.5871 -1.3113 16 1 2.2740 -7.6569 -2.3864 17 6 2.1657 -8.7182 -0.5277 18 7 2.5747 -8.7256 0.7233 19 14 1.3386 -10.2298 -1.2489 20 1 2.3664 -11.1170 -1.8504 21 1 0.6208 -10.9615 -0.1742 22 1 0.3709 -9.8129 -2.2953 23 6 2.1525 -6.0895 0.6388 24 6 1.3716 -4.7717 0.6155 25 1 -0.3634 0.0043 1.0277 26 1 -0.3633 0.8879 -0.5175 27 1 -0.3634 -0.8920 -0.5101 28 1 1.6831 2.1391 0.0004 29 1 4.1667 2.0664 -0.0096 30 1 0.5454 -2.4056 0.0153 31 1 3.1603 -3.5710 0.5904 32 1 1.6918 -4.1789 -2.0159 33 1 3.2092 -3.2577 -1.8781 34 1 4.3556 -5.2069 -0.9329 35 1 3.5751 -5.6832 -2.4616 36 1 2.4468 -9.5160 1.2707 37 1 3.0059 -5.9967 1.3105 38 1 1.5022 -6.8935 0.9830 39 1 1.0974 -4.4933 1.6331 40 1 0.4697 -4.8937 0.0156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596122081.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:04 Heat of formation + Delta-G solvation = 72.072272 kcal Electronic energy + Delta-G solvation = -22093.739199 eV Core-core repulsion = 18908.342897 eV Total energy + Delta-G solvation = -3185.396302 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51289 -39.46049 -37.82903 -36.50362 -34.72221 -34.11691 -32.41181 -31.48915 -30.30773 -28.73579 -26.88199 -24.55556 -23.92800 -23.52855 -22.74902 -21.17571 -20.30723 -18.76227 -17.87306 -17.16037 -16.84115 -16.06826 -16.01439 -15.95035 -15.43538 -15.33528 -14.82537 -14.77582 -14.57187 -14.28131 -14.12578 -14.02404 -13.71238 -13.37889 -13.30016 -13.16087 -12.99046 -12.60912 -12.55201 -12.43463 -12.25588 -12.02298 -11.90796 -11.66941 -11.26466 -10.98172 -10.55713 -10.48342 -10.40721 -8.71255 -8.58733 -7.88529 -5.34210 -0.28327 0.55076 1.40262 1.47616 1.48490 1.58844 1.85143 2.27661 2.51515 2.65360 3.01041 3.27629 3.65836 3.81080 3.94938 3.97941 4.10008 4.11732 4.31854 4.39674 4.43928 4.48433 4.66764 4.80085 4.85302 4.89998 4.94904 5.05091 5.08723 5.15373 5.18913 5.26601 5.31538 5.36545 5.48151 5.63351 5.65923 5.72054 6.16394 6.26910 6.38266 6.47905 7.13981 7.25077 7.83768 8.36725 9.18542 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.023879 B = 0.003852 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.279668 B = 7267.956109 C = 8016.091758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.165 4.165 3 C -0.031 4.031 4 C -0.158 4.158 5 C 0.198 3.802 6 C 0.288 3.712 7 N -0.442 5.442 8 N -0.548 5.548 9 C 0.396 3.604 10 N -0.708 5.708 11 C 0.177 3.823 12 C -0.119 4.119 13 C 0.144 3.856 14 N -0.608 5.608 15 C -0.266 4.266 16 H 0.066 0.934 17 C -0.048 4.048 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.268 1.268 23 C 0.180 3.820 24 C -0.130 4.130 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.186 0.814 29 H 0.167 0.833 30 H 0.418 0.582 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.003 0.997 35 H 0.052 0.948 36 H 0.251 0.749 37 H -0.009 1.009 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.679 23.280 -0.788 24.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.173 4.173 3 C -0.055 4.055 4 C -0.184 4.184 5 C 0.061 3.939 6 C -0.028 4.028 7 N -0.119 5.119 8 N -0.267 5.267 9 C 0.157 3.843 10 N -0.343 5.343 11 C 0.072 3.928 12 C -0.159 4.159 13 C 0.018 3.982 14 N -0.332 5.332 15 C -0.396 4.396 16 H 0.084 0.916 17 C -0.244 4.244 18 N -0.582 5.582 19 Si 0.796 3.204 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.193 1.193 23 C 0.054 3.946 24 C -0.169 4.169 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.083 0.917 28 H 0.204 0.796 29 H 0.185 0.815 30 H 0.258 0.742 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.021 0.979 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.009 0.991 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.397 22.109 -0.689 23.026 hybrid contribution -0.755 -0.861 -0.105 1.150 sum -7.152 21.249 -0.794 22.434 Atomic orbital electron populations 1.20759 0.87787 1.04246 1.03647 1.20797 0.98988 0.91459 1.06102 1.21633 0.92386 0.98840 0.92689 1.21983 0.96051 0.96699 1.03689 1.16076 0.84583 0.90474 1.02770 1.25525 0.92281 0.92253 0.92781 1.81229 1.13020 1.08284 1.09369 1.66836 1.08156 1.31162 1.20593 1.18279 0.86868 0.87243 0.91887 1.44759 1.08489 1.01493 1.79572 1.20472 0.94649 0.82201 0.95506 1.22138 1.00087 0.96562 0.97160 1.20963 0.92378 0.89122 0.95709 1.44334 1.60747 1.13432 1.14684 1.19520 1.42139 0.86063 0.91892 0.91623 1.25814 1.01450 1.00099 0.97016 1.70188 1.49352 1.29560 1.09066 0.85266 0.78379 0.79295 0.77422 1.21413 1.21654 1.19284 1.20532 0.94917 0.94070 0.85065 1.22250 0.98876 0.95148 1.00643 0.89693 0.88521 0.91667 0.79639 0.81520 0.74207 0.92362 0.92096 0.92227 0.97939 0.92908 0.94025 0.99082 0.92047 0.90747 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.58 71.24 0.68 -0.22 16 2 C -0.17 -2.43 5.92 -19.56 -0.12 -2.55 16 3 C -0.03 -0.32 9.83 22.41 0.22 -0.10 16 4 C -0.16 -2.24 9.79 22.63 0.22 -2.02 16 5 C 0.20 4.65 6.58 40.48 0.27 4.92 16 6 C 0.29 7.93 15.53 88.33 1.37 9.30 16 7 N -0.44 -13.94 18.54 19.00 0.35 -13.58 16 8 N -0.55 -15.47 9.11 -186.65 -1.70 -17.17 16 9 C 0.40 9.24 7.44 133.21 0.99 10.23 16 10 N -0.71 -17.22 5.13 -324.43 -1.66 -18.89 16 11 C 0.18 5.85 2.42 45.02 0.11 5.96 16 12 C -0.12 -4.23 5.66 30.67 0.17 -4.06 16 13 C 0.14 6.41 6.52 86.36 0.56 6.97 16 14 N -0.61 -31.21 2.99 -699.09 -2.09 -33.30 16 15 C -0.27 -14.83 9.58 84.03 0.81 -14.02 16 16 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 17 C -0.05 -2.72 4.92 84.86 0.42 -2.30 16 18 N -0.94 -55.75 11.19 21.65 0.24 -55.51 16 19 Si 0.97 44.80 29.59 68.60 2.03 46.83 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 C 0.18 8.72 5.30 86.36 0.46 9.18 16 24 C -0.13 -4.60 5.55 30.67 0.17 -4.43 16 25 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.10 0.39 8.09 -2.38 -0.02 0.37 16 27 H 0.06 0.61 6.56 -2.39 -0.02 0.59 16 28 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16 29 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 30 H 0.42 7.91 6.57 -92.71 -0.61 7.30 16 31 H 0.06 2.24 7.54 -2.39 -0.02 2.22 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 35 H 0.05 2.30 7.93 -2.39 -0.02 2.28 16 36 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 37 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H 0.06 3.32 6.06 -2.39 -0.01 3.30 16 39 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -71.14 334.55 3.95 -67.19 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 0.45 Total: 7.58 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 6.33 Total: 16.86 kcal Atomic # 7 Polarization: -133.60 SS G_CDS: -4.86 Total: -138.46 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.14 3.95 -67.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596122081.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.262 kcal (2) G-P(sol) polarization free energy of solvation -71.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds