Wall clock time and date at job start Tue Mar 31 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.53433 * 2 1 4 4 C 1.53043 * 109.50284 * 239.90226 * 2 1 3 5 5 N 1.46850 * 109.51961 * 180.87692 * 4 2 1 6 6 C 1.46903 * 110.99651 * 185.83724 * 5 4 2 7 7 C 1.52998 * 109.47269 * 183.79603 * 6 5 4 8 8 H 1.09000 * 109.46699 * 58.19758 * 7 6 5 9 9 C 1.47205 * 109.47142 * 298.20030 * 7 6 5 10 10 N 5.54583 * 155.09580 * 295.23823 * 2 1 3 11 11 C 1.52996 * 109.47191 * 178.19848 * 7 6 5 12 12 C 1.50699 * 109.46944 * 185.00355 * 11 7 6 13 13 H 1.07996 * 120.00164 * 359.97438 * 12 11 7 14 14 C 1.37887 * 119.99927 * 180.02562 * 12 11 7 15 15 N 1.31505 * 119.99821 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99844 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47174 * 59.99925 * 16 14 12 18 18 H 1.48494 * 109.46832 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46884 * 299.99932 * 16 14 12 20 20 C 1.46846 * 111.19685 * 61.74510 * 5 4 2 21 21 C 1.53042 * 109.52116 * 298.25051 * 20 5 4 22 22 H 1.08997 * 109.50530 * 299.24171 * 21 20 5 23 23 C 1.52999 * 109.53127 * 179.14018 * 21 20 5 24 24 C 1.53114 * 109.27521 * 59.18679 * 21 20 5 25 25 F 1.39900 * 109.52963 * 62.24829 * 24 21 20 26 26 F 1.39904 * 109.52025 * 182.43975 * 24 21 20 27 27 H 1.09001 * 109.46574 * 299.90074 * 1 2 3 28 28 H 1.08998 * 109.46883 * 59.90423 * 1 2 3 29 29 H 1.09000 * 109.46928 * 179.90249 * 1 2 3 30 30 H 1.08997 * 109.46191 * 300.89410 * 4 2 1 31 31 H 1.09000 * 109.46213 * 60.87295 * 4 2 1 32 32 H 1.08999 * 109.47355 * 303.80118 * 6 5 4 33 33 H 1.09005 * 109.46786 * 63.79800 * 6 5 4 34 34 H 1.09000 * 109.47142 * 304.99575 * 11 7 6 35 35 H 1.08997 * 109.47154 * 65.00430 * 11 7 6 36 36 H 0.97000 * 120.00345 * 179.97438 * 15 14 12 37 37 H 1.09007 * 109.45623 * 178.23936 * 20 5 4 38 38 H 1.08998 * 109.46398 * 58.27048 * 20 5 4 39 39 H 1.08999 * 109.47629 * 300.09987 * 23 21 20 40 40 H 1.09003 * 109.46830 * 60.10398 * 23 21 20 41 41 H 1.08997 * 109.46883 * 180.09658 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0410 -0.7234 -1.2481 5 7 3.5093 -0.7420 -1.2379 6 6 4.0373 -1.3058 -2.4875 7 6 5.5622 -1.3963 -2.4019 8 1 5.8422 -2.0126 -1.5476 9 6 6.1255 -0.0461 -2.2385 10 7 6.5602 0.9958 -2.1124 11 6 6.1086 -2.0249 -3.6853 12 6 7.5960 -2.2270 -3.5519 13 1 8.1011 -1.9358 -2.6429 14 6 8.3122 -2.7828 -4.5909 15 7 7.6972 -3.1369 -5.6979 16 14 10.1560 -3.0326 -4.4257 17 1 10.4327 -3.9325 -3.2774 18 1 10.6865 -3.6417 -5.6717 19 1 10.8146 -1.7214 -4.1969 20 6 4.0230 -1.4729 -0.0725 21 6 3.5712 -0.7718 1.2107 22 1 3.9678 0.2433 1.2297 23 6 4.0883 -1.5452 2.4254 24 6 2.0413 -0.7238 1.2487 25 9 1.5330 -2.0270 1.2747 26 9 1.6235 -0.0348 2.3924 27 1 -0.3632 0.5123 0.8909 28 1 -0.3633 0.5153 -0.8891 29 1 -0.3633 -1.0277 -0.0017 30 1 1.6648 -1.7464 -1.2545 31 1 1.6907 -0.2022 -2.1390 32 1 3.6222 -2.3020 -2.6406 33 1 3.7577 -0.6634 -3.3226 34 1 5.6249 -2.9872 -3.8530 35 1 5.9058 -1.3644 -4.5283 36 1 8.2010 -3.5276 -6.4290 37 1 5.1122 -1.4961 -0.1095 38 1 3.6375 -2.4924 -0.0843 39 1 3.6914 -2.5601 2.4059 40 1 5.1774 -1.5802 2.3970 41 1 3.7646 -1.0459 3.3386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599512194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:47 Heat of formation + Delta-G solvation = -92.307557 kcal Electronic energy + Delta-G solvation = -23585.704310 eV Core-core repulsion = 19942.490777 eV Total energy + Delta-G solvation = -3643.213533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.155 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.09587 -47.03127 -39.23564 -36.47009 -34.31610 -34.03048 -33.23081 -31.29733 -27.41661 -26.95480 -26.43688 -24.41957 -22.02285 -21.79394 -21.23897 -20.19085 -17.53712 -17.00239 -16.76668 -16.52871 -16.44864 -15.56669 -15.10886 -14.49756 -14.42401 -13.95374 -13.83127 -13.38830 -13.32504 -13.11875 -13.05468 -12.88171 -12.79912 -12.58241 -12.37167 -12.12316 -12.00801 -11.86621 -11.68218 -11.37137 -11.21827 -11.15278 -11.06111 -10.97723 -10.70787 -10.56525 -10.39002 -10.07091 -9.58774 -9.27595 -8.49025 -8.34884 -6.12898 -4.16485 3.28842 3.33493 3.36782 3.56471 3.64666 3.71428 3.79289 3.94009 4.13973 4.34524 4.38707 4.58486 4.83383 4.94985 5.02404 5.10172 5.12287 5.25009 5.25505 5.30671 5.43865 5.44965 5.47857 5.56288 5.61854 5.71431 5.76929 5.85778 5.87883 5.94416 5.96071 6.07082 6.29926 6.41637 6.98431 7.00200 7.37608 7.47479 7.81550 8.18657 8.51520 8.87714 9.49251 10.97933 Molecular weight = 286.16amu Principal moments of inertia in cm(-1) A = 0.027162 B = 0.003901 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.589388 B = 7176.494123 C = 7452.033912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 H 0.106 0.894 4 C 0.061 3.939 5 N -0.544 5.544 6 C 0.064 3.936 7 C 0.004 3.996 8 H 0.102 0.898 9 C 0.253 3.747 10 N -0.474 5.474 11 C 0.032 3.968 12 C -0.528 4.528 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.051 3.949 21 C -0.124 4.124 22 H 0.106 0.894 23 C -0.152 4.152 24 C 0.293 3.707 25 F -0.198 7.198 26 F -0.202 7.202 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.027 0.973 36 H 0.263 0.737 37 H 0.098 0.902 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.500 1.888 12.285 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 H 0.125 0.875 4 C -0.067 4.067 5 N -0.268 5.268 6 C -0.064 4.064 7 C -0.017 4.017 8 H 0.119 0.881 9 C -0.064 4.064 10 N -0.151 5.151 11 C -0.006 4.006 12 C -0.566 4.566 13 H 0.074 0.926 14 C -0.138 4.138 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.077 4.077 21 C -0.144 4.144 22 H 0.124 0.876 23 C -0.210 4.210 24 C 0.257 3.743 25 F -0.179 7.179 26 F -0.183 7.183 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.677 3.843 12.351 18.825 hybrid contribution 0.550 -1.423 -0.002 1.525 sum -13.127 2.420 12.349 18.184 Atomic orbital electron populations 1.21792 0.93086 1.03013 1.02983 1.22166 0.97541 1.01810 0.92927 0.87545 1.22092 0.87876 0.99552 0.97219 1.62031 1.07129 1.54708 1.02928 1.22251 0.93910 0.99210 0.91028 1.19356 0.91910 0.85993 1.04480 0.88078 1.28805 0.91828 0.94178 0.91602 1.80992 1.10563 1.13081 1.10469 1.19166 0.96261 0.96214 0.89008 1.21082 0.92556 1.41647 1.01359 0.92576 1.24940 0.98528 0.95205 0.95156 1.69918 1.36127 1.41887 1.05016 0.86657 0.85395 0.78582 0.77483 1.20041 1.21162 1.20198 1.22278 1.02086 0.95272 0.88095 1.22167 0.91275 1.03689 0.97263 0.87613 1.21797 1.02304 1.00521 0.96351 1.21205 0.93559 0.75699 0.83815 1.92958 1.89021 1.39138 1.96815 1.92972 1.91877 1.79637 1.53786 0.91759 0.91184 0.91799 0.93575 0.89234 0.92574 0.89631 0.94397 0.95459 0.92692 0.88404 0.93301 0.91730 0.90972 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.96 37.16 0.33 -0.96 16 2 C -0.12 -1.26 2.52 -90.53 -0.23 -1.49 16 3 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.06 0.64 4.63 -3.83 -0.02 0.63 16 5 N -0.54 -6.88 4.38 -234.66 -1.03 -7.91 16 6 C 0.06 0.90 4.52 -3.82 -0.02 0.88 16 7 C 0.00 0.08 1.75 -93.41 -0.16 -0.09 16 8 H 0.10 1.65 6.08 -51.93 -0.32 1.33 16 9 C 0.25 5.06 13.44 -20.76 -0.28 4.78 16 10 N -0.47 -10.38 18.54 42.15 0.78 -9.60 16 11 C 0.03 0.72 4.42 -27.89 -0.12 0.60 16 12 C -0.53 -13.74 8.60 -34.44 -0.30 -14.03 16 13 H 0.06 1.45 7.59 -52.49 -0.40 1.05 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 16 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.05 0.61 4.20 -3.83 -0.02 0.59 16 21 C -0.12 -1.39 2.52 -90.54 -0.23 -1.62 16 22 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 23 C -0.15 -1.52 8.96 37.16 0.33 -1.19 16 24 C 0.29 3.32 1.18 -26.61 -0.03 3.28 16 25 F -0.20 -2.43 15.02 2.25 0.03 -2.40 16 26 F -0.20 -2.45 16.24 2.25 0.04 -2.42 16 27 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.56 7.75 -51.93 -0.40 0.16 16 30 H 0.05 0.49 7.87 -51.93 -0.41 0.08 16 31 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.10 1.24 5.70 -51.93 -0.30 0.95 16 38 H 0.05 0.58 7.87 -51.93 -0.41 0.17 16 39 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.61 7.87 -51.93 -0.41 0.21 16 LS Contribution 337.42 15.07 5.08 5.08 Total: -1.00 -29.32 337.42 -6.60 -35.92 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -6.39 Total: -3.29 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.83 Total: -6.98 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.49 Total: -41.87 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.07 Total: -4.82 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.32 -6.60 -35.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599512194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.390 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds