Wall clock time and date at job start Tue Mar 31 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.53433 * 2 1 4 4 C 1.53043 * 109.50284 * 239.90226 * 2 1 3 5 5 N 1.46850 * 109.51961 * 180.87692 * 4 2 1 6 6 C 1.46903 * 110.99651 * 185.83724 * 5 4 2 7 7 C 1.52998 * 109.47269 * 183.79603 * 6 5 4 8 8 H 1.09000 * 109.46699 * 58.19758 * 7 6 5 9 9 C 1.47205 * 109.47142 * 298.20030 * 7 6 5 10 10 N 5.54583 * 155.09580 * 295.23823 * 2 1 3 11 11 C 1.52996 * 109.47191 * 178.19848 * 7 6 5 12 12 C 1.50699 * 109.46944 * 185.00355 * 11 7 6 13 13 H 1.07996 * 120.00164 * 359.97438 * 12 11 7 14 14 C 1.37887 * 119.99927 * 180.02562 * 12 11 7 15 15 N 1.31505 * 119.99821 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99844 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47174 * 59.99925 * 16 14 12 18 18 H 1.48494 * 109.46832 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46884 * 299.99932 * 16 14 12 20 20 C 1.46846 * 111.19685 * 61.74510 * 5 4 2 21 21 C 1.53042 * 109.52116 * 298.25051 * 20 5 4 22 22 H 1.08997 * 109.50530 * 299.24171 * 21 20 5 23 23 C 1.52999 * 109.53127 * 179.14018 * 21 20 5 24 24 C 1.53114 * 109.27521 * 59.18679 * 21 20 5 25 25 F 1.39900 * 109.52963 * 62.24829 * 24 21 20 26 26 F 1.39904 * 109.52025 * 182.43975 * 24 21 20 27 27 H 1.09001 * 109.46574 * 299.90074 * 1 2 3 28 28 H 1.08998 * 109.46883 * 59.90423 * 1 2 3 29 29 H 1.09000 * 109.46928 * 179.90249 * 1 2 3 30 30 H 1.08997 * 109.46191 * 300.89410 * 4 2 1 31 31 H 1.09000 * 109.46213 * 60.87295 * 4 2 1 32 32 H 1.08999 * 109.47355 * 303.80118 * 6 5 4 33 33 H 1.09005 * 109.46786 * 63.79800 * 6 5 4 34 34 H 1.09000 * 109.47142 * 304.99575 * 11 7 6 35 35 H 1.08997 * 109.47154 * 65.00430 * 11 7 6 36 36 H 0.97000 * 120.00345 * 179.97438 * 15 14 12 37 37 H 1.09007 * 109.45623 * 178.23936 * 20 5 4 38 38 H 1.08998 * 109.46398 * 58.27048 * 20 5 4 39 39 H 1.08999 * 109.47629 * 300.09987 * 23 21 20 40 40 H 1.09003 * 109.46830 * 60.10398 * 23 21 20 41 41 H 1.08997 * 109.46883 * 180.09658 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0410 -0.7234 -1.2481 5 7 3.5093 -0.7420 -1.2379 6 6 4.0373 -1.3058 -2.4875 7 6 5.5622 -1.3963 -2.4019 8 1 5.8422 -2.0126 -1.5476 9 6 6.1255 -0.0461 -2.2385 10 7 6.5602 0.9958 -2.1124 11 6 6.1086 -2.0249 -3.6853 12 6 7.5960 -2.2270 -3.5519 13 1 8.1011 -1.9358 -2.6429 14 6 8.3122 -2.7828 -4.5909 15 7 7.6972 -3.1369 -5.6979 16 14 10.1560 -3.0326 -4.4257 17 1 10.4327 -3.9325 -3.2774 18 1 10.6865 -3.6417 -5.6717 19 1 10.8146 -1.7214 -4.1969 20 6 4.0230 -1.4729 -0.0725 21 6 3.5712 -0.7718 1.2107 22 1 3.9678 0.2433 1.2297 23 6 4.0883 -1.5452 2.4254 24 6 2.0413 -0.7238 1.2487 25 9 1.5330 -2.0270 1.2747 26 9 1.6235 -0.0348 2.3924 27 1 -0.3632 0.5123 0.8909 28 1 -0.3633 0.5153 -0.8891 29 1 -0.3633 -1.0277 -0.0017 30 1 1.6648 -1.7464 -1.2545 31 1 1.6907 -0.2022 -2.1390 32 1 3.6222 -2.3020 -2.6406 33 1 3.7577 -0.6634 -3.3226 34 1 5.6249 -2.9872 -3.8530 35 1 5.9058 -1.3644 -4.5283 36 1 8.2010 -3.5276 -6.4290 37 1 5.1122 -1.4961 -0.1095 38 1 3.6375 -2.4924 -0.0843 39 1 3.6914 -2.5601 2.4059 40 1 5.1774 -1.5802 2.3970 41 1 3.7646 -1.0459 3.3386 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599512194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:47 Heat of formation + Delta-G solvation = -108.152363 kcal Electronic energy + Delta-G solvation = -23586.391392 eV Core-core repulsion = 19942.490777 eV Total energy + Delta-G solvation = -3643.900615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.155 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.01038 -47.95522 -40.26402 -37.91650 -35.78251 -34.87870 -34.83993 -32.84092 -28.82582 -27.83977 -27.44016 -25.75566 -23.71402 -22.82443 -22.22021 -21.08040 -18.56000 -18.44767 -18.17930 -17.71499 -17.43633 -16.80865 -16.36293 -16.10732 -15.50874 -14.91778 -14.83076 -14.61565 -14.41008 -14.27176 -14.21183 -13.92575 -13.80784 -13.68892 -13.66587 -13.43889 -13.29173 -13.02789 -12.83021 -12.77515 -12.73603 -12.44565 -12.32788 -12.16154 -11.97077 -11.90242 -11.76243 -11.38516 -11.15199 -11.00467 -10.53540 -9.32723 -8.18444 -6.26507 1.42068 1.43899 1.50503 2.06825 2.14011 2.42144 2.67831 2.79142 3.08849 3.17412 3.28610 3.33003 3.46933 3.72031 4.06377 4.13910 4.17139 4.27202 4.32241 4.38158 4.43380 4.56567 4.59590 4.67366 4.78703 4.80618 4.82966 4.90500 4.98547 5.00595 5.02354 5.12327 5.21869 5.26987 5.47550 5.62185 5.79408 5.96198 6.03863 6.21638 6.84011 6.93756 7.42157 8.92234 Molecular weight = 286.16amu Principal moments of inertia in cm(-1) A = 0.027162 B = 0.003901 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.589388 B = 7176.494123 C = 7452.033912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 H 0.105 0.895 4 C 0.062 3.938 5 N -0.552 5.552 6 C 0.074 3.926 7 C 0.015 3.985 8 H 0.119 0.881 9 C 0.265 3.735 10 N -0.509 5.509 11 C 0.038 3.962 12 C -0.540 4.540 13 H 0.054 0.946 14 C 0.014 3.986 15 N -0.923 5.923 16 Si 0.946 3.054 17 H -0.263 1.263 18 H -0.283 1.283 19 H -0.281 1.281 20 C 0.051 3.949 21 C -0.123 4.123 22 H 0.100 0.900 23 C -0.150 4.150 24 C 0.290 3.710 25 F -0.204 7.204 26 F -0.207 7.207 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.036 0.964 35 H 0.003 0.997 36 H 0.264 0.736 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.102 1.618 13.051 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 H 0.124 0.876 4 C -0.066 4.066 5 N -0.277 5.277 6 C -0.055 4.055 7 C -0.006 4.006 8 H 0.136 0.864 9 C -0.052 4.052 10 N -0.186 5.186 11 C -0.001 4.001 12 C -0.578 4.578 13 H 0.072 0.928 14 C -0.185 4.185 15 N -0.563 5.563 16 Si 0.771 3.229 17 H -0.188 1.188 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.077 4.077 21 C -0.142 4.142 22 H 0.119 0.881 23 C -0.208 4.208 24 C 0.254 3.746 25 F -0.185 7.185 26 F -0.188 7.188 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.022 0.978 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.286 3.572 13.136 19.733 hybrid contribution 0.718 -1.326 -0.217 1.524 sum -13.568 2.245 12.919 18.869 Atomic orbital electron populations 1.21777 0.91776 1.03154 1.03775 1.22165 0.98597 1.01400 0.91978 0.87648 1.22154 0.86362 1.00069 0.97995 1.61998 1.08561 1.54756 1.02350 1.22089 0.91127 1.00350 0.91912 1.19301 0.94244 0.84525 1.02562 0.86394 1.29243 0.90932 0.94390 0.90612 1.80993 1.11746 1.14299 1.11560 1.18985 0.94708 0.95879 0.90497 1.21517 0.94533 1.40693 1.01043 0.92758 1.25673 1.02366 0.95373 0.95108 1.70013 1.37513 1.43043 1.05683 0.85792 0.80899 0.78306 0.77858 1.18760 1.20834 1.20697 1.22268 1.01586 0.95602 0.88251 1.22136 0.91325 1.03458 0.97296 0.88129 1.21791 1.02698 1.00346 0.95934 1.21347 0.93602 0.75529 0.84108 1.92946 1.89092 1.39581 1.96853 1.92960 1.91927 1.79740 1.54219 0.91821 0.89589 0.91953 0.93178 0.88005 0.90980 0.89569 0.94618 0.97848 0.92721 0.89213 0.92837 0.91698 0.90367 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.96 71.98 0.64 -1.55 16 2 C -0.12 -2.23 2.52 -10.74 -0.03 -2.25 16 3 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 4 C 0.06 1.17 4.63 86.33 0.40 1.57 16 5 N -0.55 -12.93 4.38 -896.32 -3.92 -16.85 16 6 C 0.07 1.93 4.52 86.30 0.39 2.32 16 7 C 0.02 0.52 1.75 -12.60 -0.02 0.50 16 8 H 0.12 3.65 6.08 -2.39 -0.01 3.64 16 9 C 0.26 10.39 13.44 89.44 1.20 11.59 16 10 N -0.51 -22.04 18.54 20.01 0.37 -21.67 16 11 C 0.04 1.69 4.42 29.85 0.13 1.82 16 12 C -0.54 -27.85 8.60 25.60 0.22 -27.63 16 13 H 0.05 2.76 7.59 -2.91 -0.02 2.74 16 14 C 0.01 0.75 5.46 84.66 0.46 1.21 16 15 N -0.92 -52.10 13.29 21.45 0.28 -51.81 16 16 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 C 0.05 1.13 4.20 86.33 0.36 1.50 16 21 C -0.12 -2.56 2.52 -10.74 -0.03 -2.59 16 22 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 23 C -0.15 -2.79 8.96 71.98 0.64 -2.14 16 24 C 0.29 6.10 1.18 30.67 0.04 6.14 16 25 F -0.20 -4.65 15.02 44.97 0.68 -3.97 16 26 F -0.21 -4.77 16.24 44.97 0.73 -4.04 16 27 H 0.06 0.97 7.87 -2.39 -0.02 0.95 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.96 7.75 -2.39 -0.02 0.94 16 30 H 0.05 0.93 7.87 -2.39 -0.02 0.91 16 31 H 0.10 1.69 8.12 -2.39 -0.02 1.67 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 34 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.09 2.14 5.70 -2.38 -0.01 2.13 16 38 H 0.05 1.15 7.87 -2.39 -0.02 1.13 16 39 H 0.06 1.20 7.75 -2.39 -0.02 1.18 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.19 7.87 -2.39 -0.02 1.17 16 Total: -1.00 -61.26 337.42 5.60 -55.66 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.01 Total: 7.53 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 4.42 Total: -9.53 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -3.27 Total: -90.33 kcal Atomic # 9 Polarization: -9.42 SS G_CDS: 1.41 Total: -8.01 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -61.26 5.60 -55.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599512194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.488 kcal (2) G-P(sol) polarization free energy of solvation -61.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds