Wall clock time and date at job start Tue Mar 31 2020 05:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34672 * 126.58675 * 2 1 4 4 N 1.34125 * 108.01802 * 179.74399 * 3 2 1 5 5 C 1.30503 * 109.25537 * 0.37463 * 4 3 2 6 6 C 1.50704 * 125.64684 * 179.89345 * 5 4 3 7 7 N 1.46901 * 109.47259 * 274.68869 * 6 5 4 8 8 C 1.46898 * 110.99720 * 66.04641 * 7 6 5 9 9 C 1.50699 * 109.47155 * 193.95501 * 8 7 6 10 10 H 1.08004 * 119.99782 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00305 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99866 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99965 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47160 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47037 * 119.99871 * 13 11 9 16 16 H 1.48504 * 109.46674 * 240.00045 * 13 11 9 17 17 C 1.46898 * 110.99845 * 190.00318 * 7 6 5 18 18 C 1.50707 * 109.46592 * 170.00327 * 17 7 6 19 19 C 1.38227 * 119.62024 * 94.97729 * 18 17 7 20 20 C 1.38627 * 119.15702 * 179.78495 * 19 18 17 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61172 * 274.99481 * 18 17 7 24 24 N 1.35036 * 108.70027 * 359.62299 * 5 4 3 25 25 H 0.97006 * 126.39976 * 180.24245 * 24 5 4 26 26 H 1.08999 * 109.47234 * 270.03718 * 1 2 3 27 27 H 1.08990 * 109.47643 * 30.04044 * 1 2 3 28 28 H 1.09011 * 109.46751 * 150.04296 * 1 2 3 29 29 H 1.08002 * 125.99142 * 359.93120 * 3 2 1 30 30 H 1.09005 * 109.47002 * 154.68910 * 6 5 4 31 31 H 1.08999 * 109.47250 * 34.69443 * 6 5 4 32 32 H 1.09002 * 109.47442 * 313.95778 * 8 7 6 33 33 H 1.08997 * 109.47281 * 73.95810 * 8 7 6 34 34 H 0.96999 * 120.00005 * 179.97438 * 12 11 9 35 35 H 1.08993 * 109.47549 * 49.99892 * 17 7 6 36 36 H 1.08997 * 109.47171 * 289.99469 * 17 7 6 37 37 H 1.07998 * 120.41916 * 359.97438 * 19 18 17 38 38 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 39 39 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 40 40 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0814 0.0000 4 7 3.5811 0.6543 0.0057 5 6 3.5968 -0.6507 0.0012 6 6 4.8319 -1.5142 0.0028 7 7 5.3034 -1.6972 -1.3764 8 6 5.7668 -0.4255 -1.9473 9 6 5.9163 -0.5698 -3.4399 10 1 5.6893 -1.5119 -3.9167 11 6 6.3429 0.5008 -4.1968 12 7 6.6188 1.6481 -3.6162 13 14 6.5274 0.3221 -6.0470 14 1 6.1566 -1.0581 -6.4504 15 1 5.6361 1.2941 -6.7295 16 1 7.9369 0.5880 -6.4318 17 6 6.3571 -2.7186 -1.4413 18 6 6.6421 -3.0552 -2.8824 19 6 7.6753 -2.4162 -3.5418 20 6 7.9319 -2.7364 -4.8659 21 6 7.1298 -3.6844 -5.4831 22 6 6.1152 -4.2818 -4.7598 23 7 5.9027 -3.9557 -3.4997 24 7 2.3230 -1.0989 0.0008 25 1 2.0392 -2.0266 0.0011 26 1 -0.3633 0.0007 1.0276 27 1 -0.3634 0.8895 -0.5144 28 1 -0.3633 -0.8905 -0.5132 29 1 1.9863 2.1118 -0.0010 30 1 4.5957 -2.4853 0.4379 31 1 5.6116 -1.0320 0.5925 32 1 5.0402 0.3572 -1.7288 33 1 6.7292 -0.1601 -1.5098 34 1 6.9193 2.4012 -4.1486 35 1 6.0268 -3.6153 -0.9172 36 1 7.2633 -2.3362 -0.9716 37 1 8.2770 -1.6790 -3.0310 38 1 8.7349 -2.2560 -5.4053 39 1 7.2988 -3.9558 -6.5147 40 1 5.4887 -5.0240 -5.2319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600117692.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:13 Heat of formation + Delta-G solvation = 112.637177 kcal Electronic energy + Delta-G solvation = -22819.346699 eV Core-core repulsion = 19635.709423 eV Total energy + Delta-G solvation = -3183.637276 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.61731 -39.58447 -36.57158 -32.71112 -32.42786 -31.87386 -31.46180 -30.72446 -28.01277 -27.29373 -25.10594 -23.68579 -22.65280 -21.89818 -20.66856 -20.29452 -19.78604 -16.90122 -16.57982 -16.07421 -15.56647 -15.16998 -14.91059 -14.50958 -14.11494 -13.84154 -13.81618 -13.21056 -13.01157 -12.87544 -12.54627 -12.43782 -12.40012 -12.11018 -11.90761 -11.80886 -11.44386 -11.08694 -10.84640 -10.61531 -10.44618 -9.85003 -9.50204 -9.43576 -9.16535 -8.93033 -8.65827 -8.45993 -7.83959 -7.76120 -7.34275 -6.00146 -3.91930 1.92295 2.15237 2.42906 3.28113 3.37780 3.43778 3.48113 3.62086 4.42700 4.52910 4.91775 5.05404 5.17992 5.25799 5.27842 5.37482 5.47493 5.52805 5.58268 5.58661 5.79265 5.80595 5.90403 5.91931 5.94857 6.05900 6.18903 6.24018 6.43133 6.55708 6.65027 6.92513 7.02061 7.19838 7.25386 7.38554 7.53376 7.78843 7.83486 8.14794 8.19438 8.52395 8.63899 8.84322 9.08544 9.62161 11.09194 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.016174 B = 0.006009 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.706722 B = 4658.764643 C = 5477.747318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.044 4.044 3 C -0.022 4.022 4 N -0.472 5.472 5 C 0.236 3.764 6 C 0.138 3.862 7 N -0.527 5.527 8 C 0.180 3.820 9 C -0.494 4.494 10 H 0.072 0.928 11 C 0.061 3.939 12 N -0.884 5.884 13 Si 0.873 3.127 14 H -0.263 1.263 15 H -0.287 1.287 16 H -0.284 1.284 17 C 0.118 3.882 18 C 0.160 3.840 19 C -0.079 4.079 20 C -0.111 4.111 21 C -0.173 4.173 22 C 0.065 3.935 23 N -0.477 5.477 24 N -0.558 5.558 25 H 0.414 0.586 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.163 0.837 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.060 0.940 33 H -0.008 1.008 34 H 0.259 0.741 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 -8.473 5.405 11.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.159 4.159 3 C -0.171 4.171 4 N -0.191 5.191 5 C -0.028 4.028 6 C 0.008 3.992 7 N -0.254 5.254 8 C 0.055 3.945 9 C -0.532 4.532 10 H 0.090 0.910 11 C -0.141 4.141 12 N -0.523 5.523 13 Si 0.701 3.299 14 H -0.187 1.187 15 H -0.213 1.213 16 H -0.210 1.210 17 C -0.010 4.010 18 C 0.019 3.981 19 C -0.100 4.100 20 C -0.137 4.137 21 C -0.193 4.193 22 C -0.091 4.091 23 N -0.186 5.186 24 N -0.161 5.161 25 H 0.251 0.749 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.180 0.820 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.010 0.990 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.147 0.853 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.128 -8.298 5.546 11.221 hybrid contribution 0.499 0.148 -1.484 1.572 sum -4.629 -8.150 4.062 10.215 Atomic orbital electron populations 1.20126 0.87697 1.03052 1.01979 1.21125 0.94057 0.87484 1.13257 1.22052 0.88662 0.98248 1.08139 1.70321 1.21935 1.08232 1.18627 1.22959 0.85306 0.90792 1.03737 1.20271 0.90648 0.95779 0.92527 1.62167 1.36728 1.11805 1.14651 1.20051 0.95081 0.85051 0.94312 1.21527 1.42014 0.97798 0.91866 0.91014 1.24877 0.96236 0.95152 0.97881 1.69996 1.45232 1.01791 1.35272 0.86795 0.77665 0.78766 0.86679 1.18696 1.21344 1.20991 1.20699 0.93697 0.95287 0.91345 1.20569 0.90289 0.91311 0.95908 1.21685 0.97570 0.95747 0.94953 1.21226 0.99887 0.97446 0.95131 1.21832 0.98085 0.99164 1.00233 1.22271 0.96534 0.99594 0.90653 1.67304 1.25903 1.15201 1.10241 1.43051 1.06988 1.08951 1.57149 0.74927 0.91554 0.90278 0.92089 0.82003 0.90539 0.92362 0.92202 0.98977 0.93088 0.90928 0.94033 0.85340 0.86417 0.86548 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.44 36.01 0.38 -0.36 16 2 C -0.04 -0.66 7.24 -81.60 -0.59 -1.25 16 3 C -0.02 -0.40 11.79 -17.81 -0.21 -0.61 16 4 N -0.47 -10.04 9.89 -10.81 -0.11 -10.14 16 5 C 0.24 4.45 6.95 -155.42 -1.08 3.37 16 6 C 0.14 2.42 5.59 -4.97 -0.03 2.39 16 7 N -0.53 -11.09 4.55 -238.96 -1.09 -12.18 16 8 C 0.18 4.62 4.55 -4.98 -0.02 4.59 16 9 C -0.49 -13.42 5.77 -34.44 -0.20 -13.62 16 10 H 0.07 1.98 4.93 -52.48 -0.26 1.72 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.88 -26.25 13.29 55.43 0.74 -25.51 16 13 Si 0.87 21.72 28.17 -169.99 -4.79 16.94 16 14 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 C 0.12 2.21 5.28 -4.97 -0.03 2.18 16 18 C 0.16 3.25 4.01 -82.58 -0.33 2.92 16 19 C -0.08 -1.61 6.30 -39.44 -0.25 -1.86 16 20 C -0.11 -2.12 8.72 -39.28 -0.34 -2.46 16 21 C -0.17 -3.08 10.11 -39.44 -0.40 -3.48 16 22 C 0.06 1.18 11.18 -17.55 -0.20 0.98 16 23 N -0.48 -9.66 10.16 -9.47 -0.10 -9.76 16 24 N -0.56 -8.64 6.15 -6.54 -0.04 -8.68 16 25 H 0.41 5.06 8.96 -40.82 -0.37 4.70 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 29 H 0.16 2.53 8.06 -52.49 -0.42 2.11 16 30 H 0.08 1.06 7.93 -51.93 -0.41 0.65 16 31 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 32 H 0.06 1.72 5.93 -51.93 -0.31 1.41 16 33 H -0.01 -0.21 7.99 -51.93 -0.41 -0.62 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 36 H 0.04 0.74 7.91 -51.93 -0.41 0.33 16 37 H 0.13 2.66 7.98 -52.49 -0.42 2.24 16 38 H 0.12 2.05 8.06 -52.48 -0.42 1.62 16 39 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 329.57 15.07 4.97 4.97 Total: -1.00 -33.81 329.57 -9.33 -43.14 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.52 Total: 6.81 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -3.39 Total: -5.59 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -0.59 Total: -66.27 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.79 Total: 16.94 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.81 -9.33 -43.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600117692.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.781 kcal (2) G-P(sol) polarization free energy of solvation -33.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds