Wall clock time and date at job start Tue Mar 31 2020 05:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34672 * 126.58675 * 2 1 4 4 N 1.34125 * 108.01802 * 179.74399 * 3 2 1 5 5 C 1.30503 * 109.25537 * 0.37463 * 4 3 2 6 6 C 1.50704 * 125.64684 * 179.89345 * 5 4 3 7 7 N 1.46901 * 109.47259 * 274.68869 * 6 5 4 8 8 C 1.46898 * 110.99720 * 66.04641 * 7 6 5 9 9 C 1.50699 * 109.47155 * 193.95501 * 8 7 6 10 10 H 1.08004 * 119.99782 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00305 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99866 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99965 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47160 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47037 * 119.99871 * 13 11 9 16 16 H 1.48504 * 109.46674 * 240.00045 * 13 11 9 17 17 C 1.46898 * 110.99845 * 190.00318 * 7 6 5 18 18 C 1.50707 * 109.46592 * 170.00327 * 17 7 6 19 19 C 1.38227 * 119.62024 * 94.97729 * 18 17 7 20 20 C 1.38627 * 119.15702 * 179.78495 * 19 18 17 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61172 * 274.99481 * 18 17 7 24 24 N 1.35036 * 108.70027 * 359.62299 * 5 4 3 25 25 H 0.97006 * 126.39976 * 180.24245 * 24 5 4 26 26 H 1.08999 * 109.47234 * 270.03718 * 1 2 3 27 27 H 1.08990 * 109.47643 * 30.04044 * 1 2 3 28 28 H 1.09011 * 109.46751 * 150.04296 * 1 2 3 29 29 H 1.08002 * 125.99142 * 359.93120 * 3 2 1 30 30 H 1.09005 * 109.47002 * 154.68910 * 6 5 4 31 31 H 1.08999 * 109.47250 * 34.69443 * 6 5 4 32 32 H 1.09002 * 109.47442 * 313.95778 * 8 7 6 33 33 H 1.08997 * 109.47281 * 73.95810 * 8 7 6 34 34 H 0.96999 * 120.00005 * 179.97438 * 12 11 9 35 35 H 1.08993 * 109.47549 * 49.99892 * 17 7 6 36 36 H 1.08997 * 109.47171 * 289.99469 * 17 7 6 37 37 H 1.07998 * 120.41916 * 359.97438 * 19 18 17 38 38 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 39 39 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 40 40 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0814 0.0000 4 7 3.5811 0.6543 0.0057 5 6 3.5968 -0.6507 0.0012 6 6 4.8319 -1.5142 0.0028 7 7 5.3034 -1.6972 -1.3764 8 6 5.7668 -0.4255 -1.9473 9 6 5.9163 -0.5698 -3.4399 10 1 5.6893 -1.5119 -3.9167 11 6 6.3429 0.5008 -4.1968 12 7 6.6188 1.6481 -3.6162 13 14 6.5274 0.3221 -6.0470 14 1 6.1566 -1.0581 -6.4504 15 1 5.6361 1.2941 -6.7295 16 1 7.9369 0.5880 -6.4318 17 6 6.3571 -2.7186 -1.4413 18 6 6.6421 -3.0552 -2.8824 19 6 7.6753 -2.4162 -3.5418 20 6 7.9319 -2.7364 -4.8659 21 6 7.1298 -3.6844 -5.4831 22 6 6.1152 -4.2818 -4.7598 23 7 5.9027 -3.9557 -3.4997 24 7 2.3230 -1.0989 0.0008 25 1 2.0392 -2.0266 0.0011 26 1 -0.3633 0.0007 1.0276 27 1 -0.3634 0.8895 -0.5144 28 1 -0.3633 -0.8905 -0.5132 29 1 1.9863 2.1118 -0.0010 30 1 4.5957 -2.4853 0.4379 31 1 5.6116 -1.0320 0.5925 32 1 5.0402 0.3572 -1.7288 33 1 6.7292 -0.1601 -1.5098 34 1 6.9193 2.4012 -4.1486 35 1 6.0268 -3.6153 -0.9172 36 1 7.2633 -2.3362 -0.9716 37 1 8.2770 -1.6790 -3.0310 38 1 8.7349 -2.2560 -5.4053 39 1 7.2988 -3.9558 -6.5147 40 1 5.4887 -5.0240 -5.2319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600117692.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:13 Heat of formation + Delta-G solvation = 88.619439 kcal Electronic energy + Delta-G solvation = -22820.388186 eV Core-core repulsion = 19635.709423 eV Total energy + Delta-G solvation = -3184.678763 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.93519 -41.09013 -38.18012 -34.72312 -33.73174 -33.28060 -32.95810 -32.04484 -29.71716 -28.84389 -26.46657 -25.41820 -24.14279 -23.55206 -22.02328 -21.78410 -21.21042 -18.62411 -18.22688 -17.49966 -17.11682 -16.65296 -16.54744 -16.25143 -15.51420 -15.39949 -15.19041 -14.66330 -14.38661 -14.28421 -14.03110 -13.93562 -13.55935 -13.49138 -13.42603 -13.16437 -13.02840 -12.86660 -12.61661 -12.37118 -12.17805 -11.73182 -11.27488 -10.88071 -10.75325 -10.55323 -10.43479 -10.14399 -9.40868 -9.18085 -8.96312 -8.12956 -6.10629 0.45163 0.65048 1.14599 1.30853 1.35724 1.46497 2.18297 2.30667 2.40502 3.02855 3.22844 3.54506 3.62852 3.74221 4.07466 4.11257 4.17127 4.23746 4.39824 4.41500 4.45719 4.47732 4.60785 4.65218 4.73152 4.82887 4.92995 4.97495 5.08706 5.12887 5.27164 5.41544 5.42922 5.47716 5.57240 5.72133 5.90703 6.05806 6.16186 6.32477 6.57411 6.66460 6.96965 7.30469 7.34807 7.48394 8.97731 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.016174 B = 0.006009 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.706722 B = 4658.764643 C = 5477.747318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.017 4.017 3 C -0.068 4.068 4 N -0.524 5.524 5 C 0.212 3.788 6 C 0.139 3.861 7 N -0.532 5.532 8 C 0.201 3.799 9 C -0.487 4.487 10 H 0.072 0.928 11 C 0.011 3.989 12 N -0.928 5.928 13 Si 0.927 3.073 14 H -0.250 1.250 15 H -0.296 1.296 16 H -0.273 1.273 17 C 0.116 3.884 18 C 0.144 3.856 19 C -0.101 4.101 20 C -0.115 4.115 21 C -0.174 4.174 22 C 0.064 3.936 23 N -0.491 5.491 24 N -0.546 5.546 25 H 0.430 0.570 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.171 0.829 30 H 0.120 0.880 31 H 0.050 0.950 32 H 0.026 0.974 33 H -0.040 1.040 34 H 0.257 0.743 35 H 0.103 0.897 36 H 0.044 0.956 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.422 -11.210 4.374 13.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.135 4.135 3 C -0.216 4.216 4 N -0.244 5.244 5 C -0.053 4.053 6 C 0.010 3.990 7 N -0.257 5.257 8 C 0.075 3.925 9 C -0.525 4.525 10 H 0.090 0.910 11 C -0.187 4.187 12 N -0.570 5.570 13 Si 0.753 3.247 14 H -0.173 1.173 15 H -0.223 1.223 16 H -0.199 1.199 17 C -0.012 4.012 18 C 0.005 3.995 19 C -0.122 4.122 20 C -0.141 4.141 21 C -0.194 4.194 22 C -0.092 4.092 23 N -0.201 5.201 24 N -0.151 5.151 25 H 0.271 0.729 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.188 0.812 30 H 0.138 0.862 31 H 0.068 0.932 32 H 0.044 0.956 33 H -0.022 1.022 34 H 0.066 0.934 35 H 0.121 0.879 36 H 0.062 0.938 37 H 0.129 0.871 38 H 0.149 0.851 39 H 0.170 0.830 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.731 -11.085 4.532 13.737 hybrid contribution 0.949 0.880 -1.147 1.730 sum -5.782 -10.205 3.385 12.207 Atomic orbital electron populations 1.20312 0.83847 1.04386 1.03992 1.21801 0.96047 0.86322 1.09283 1.22426 0.88452 0.99883 1.10804 1.70207 1.24174 1.10128 1.19933 1.23011 0.86692 0.90437 1.05110 1.20398 0.90163 0.97825 0.90644 1.62042 1.37055 1.09798 1.16847 1.19582 0.92407 0.86582 0.93971 1.21680 1.40869 0.97442 0.92520 0.91037 1.25573 0.96418 0.94924 1.01770 1.70132 1.47458 1.02671 1.36701 0.85957 0.77872 0.78903 0.82014 1.17309 1.22312 1.19890 1.20810 0.93412 0.95578 0.91357 1.20745 0.90472 0.91674 0.96613 1.21676 0.98248 0.96339 0.95940 1.21544 1.00326 0.97547 0.94651 1.22241 0.97190 0.98104 1.01850 1.22950 0.96635 0.99535 0.90068 1.67358 1.26063 1.15328 1.11397 1.43005 1.05997 1.09993 1.56090 0.72924 0.89058 0.89290 0.90367 0.81157 0.86192 0.93178 0.95590 1.02209 0.93383 0.87896 0.93837 0.87138 0.85066 0.83027 0.80934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.44 71.24 0.74 -0.45 16 2 C -0.02 -0.51 7.24 40.95 0.30 -0.21 16 3 C -0.07 -2.51 11.79 83.52 0.98 -1.52 16 4 N -0.52 -23.21 9.89 -188.13 -1.86 -25.07 16 5 C 0.21 8.03 6.95 138.13 0.96 8.99 16 6 C 0.14 4.86 5.59 85.56 0.48 5.34 16 7 N -0.53 -22.42 4.55 -909.94 -4.14 -26.56 16 8 C 0.20 10.73 4.55 85.56 0.39 11.12 16 9 C -0.49 -26.93 5.77 25.60 0.15 -26.78 16 10 H 0.07 3.92 4.93 -2.91 -0.01 3.91 16 11 C 0.01 0.63 5.46 84.66 0.46 1.09 16 12 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 13 Si 0.93 44.69 28.17 68.60 1.93 46.62 16 14 H -0.25 -11.35 7.11 99.48 0.71 -10.64 16 15 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 16 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 17 C 0.12 4.29 5.28 85.56 0.45 4.74 16 18 C 0.14 5.74 4.01 42.55 0.17 5.91 16 19 C -0.10 -4.11 6.30 22.36 0.14 -3.97 16 20 C -0.11 -4.16 8.72 22.47 0.20 -3.96 16 21 C -0.17 -5.57 10.11 22.36 0.23 -5.35 16 22 C 0.06 2.10 11.18 84.67 0.95 3.05 16 23 N -0.49 -18.75 10.16 -183.88 -1.87 -20.62 16 24 N -0.55 -16.12 6.15 -174.60 -1.07 -17.19 16 25 H 0.43 9.41 8.96 -92.70 -0.83 8.58 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.17 5.56 8.06 -2.91 -0.02 5.54 16 30 H 0.12 3.07 7.93 -2.38 -0.02 3.05 16 31 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 32 H 0.03 1.58 5.93 -2.39 -0.01 1.56 16 33 H -0.04 -2.32 7.99 -2.39 -0.02 -2.34 16 34 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.10 3.12 7.93 -2.39 -0.02 3.10 16 36 H 0.04 1.57 7.91 -2.39 -0.02 1.55 16 37 H 0.11 4.78 7.98 -2.91 -0.02 4.76 16 38 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 39 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.17 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -76.35 329.57 0.09 -76.27 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.22 Total: 25.63 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 6.59 Total: -2.01 kcal Atomic # 7 Polarization: -137.84 SS G_CDS: -8.66 Total: -146.50 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.93 Total: 46.62 kcal Total: -76.35 0.09 -76.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600117692.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.885 kcal (2) G-P(sol) polarization free energy of solvation -76.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds