Wall clock time and date at job start Tue Mar 31 2020 05:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37908 * 119.49616 * 2 1 4 4 C 1.40094 * 119.16164 * 180.02562 * 3 2 1 5 5 C 1.43199 * 120.88878 * 179.97438 * 4 3 2 6 6 N 4.80792 * 135.19388 * 359.97438 * 2 1 3 7 7 C 1.39654 * 118.21920 * 359.96359 * 4 3 2 8 8 C 1.38980 * 118.92732 * 0.02562 * 7 4 3 9 9 N 1.39038 * 119.64103 * 180.02562 * 8 7 4 10 10 C 1.46961 * 110.99478 * 303.79590 * 9 8 7 11 11 C 1.53053 * 109.36048 * 176.81351 * 10 9 8 12 12 N 1.46962 * 109.36346 * 58.39897 * 11 10 9 13 13 C 1.46900 * 110.99679 * 176.80952 * 12 11 10 14 14 C 1.50704 * 109.47012 * 58.97903 * 13 12 11 15 15 H 1.07998 * 119.99930 * 5.01220 * 14 13 12 16 16 C 1.37877 * 119.99818 * 185.00318 * 14 13 12 17 17 N 1.31512 * 120.00414 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99727 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47315 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46952 * 120.00633 * 18 16 14 21 21 H 1.48496 * 109.46967 * 240.00261 * 18 16 14 22 22 C 1.46951 * 110.88149 * 300.67883 * 12 11 10 23 23 C 1.46951 * 110.99777 * 179.97438 * 9 8 7 24 24 N 1.31926 * 119.49824 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47112 * 270.02333 * 1 2 3 26 26 H 1.09002 * 109.46872 * 30.02147 * 1 2 3 27 27 H 1.08996 * 109.46989 * 150.01675 * 1 2 3 28 28 H 1.08001 * 120.42134 * 0.02798 * 3 2 1 29 29 H 1.08003 * 120.53384 * 180.29157 * 7 4 3 30 30 H 1.09000 * 109.49012 * 296.77736 * 10 9 8 31 31 H 1.08991 * 109.48875 * 56.84592 * 10 9 8 32 32 H 1.09003 * 109.48880 * 298.43353 * 11 10 9 33 33 H 1.08998 * 109.48673 * 178.36531 * 11 10 9 34 34 H 1.08995 * 109.47136 * 178.97666 * 13 12 11 35 35 H 1.09001 * 109.47736 * 298.98009 * 13 12 11 36 36 H 0.96999 * 120.00413 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.48989 * 299.35562 * 22 12 11 38 38 H 1.09003 * 109.48896 * 179.29228 * 22 12 11 39 39 H 1.08998 * 109.48735 * 303.14879 * 23 9 8 40 40 H 1.08994 * 109.49291 * 63.19516 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1860 1.2003 0.0000 4 6 3.5870 1.1922 -0.0005 5 6 4.3293 2.4167 -0.0011 6 7 4.9182 3.3882 -0.0015 7 6 4.2401 -0.0422 -0.0003 8 6 3.4793 -1.2053 -0.0001 9 7 4.1143 -2.4423 0.0007 10 6 5.0341 -2.5627 -1.1391 11 6 5.7699 -3.9023 -1.0579 12 7 4.7897 -4.9974 -1.0577 13 6 5.4606 -6.3043 -1.0570 14 6 6.3411 -6.4162 0.1610 15 1 6.3354 -5.6336 0.9052 16 6 7.1537 -7.5179 0.3252 17 7 7.1609 -8.4708 -0.5812 18 14 8.2446 -7.6570 1.8352 19 1 8.0524 -6.4626 2.6965 20 1 7.8823 -8.8793 2.5967 21 1 9.6659 -7.7399 1.4131 22 6 3.8700 -4.8768 0.0820 23 6 3.1342 -3.5372 0.0015 24 7 2.1566 -1.1482 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8901 -0.5136 28 1 1.6447 2.1349 0.0005 29 1 5.3190 -0.0922 0.0040 30 1 4.4685 -2.5143 -2.0696 31 1 5.7576 -1.7481 -1.1101 32 1 6.3571 -3.9397 -0.1403 33 1 6.4314 -4.0065 -1.9179 34 1 4.7124 -7.0967 -1.0385 35 1 6.0697 -6.4006 -1.9557 36 1 7.7329 -9.2456 -0.4658 37 1 4.4356 -4.9253 1.0125 38 1 3.1464 -5.6916 0.0531 39 1 2.4730 -3.4329 0.8617 40 1 2.5464 -3.4998 -0.9156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601261481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:11 Heat of formation + Delta-G solvation = 85.254167 kcal Electronic energy + Delta-G solvation = -21927.770261 eV Core-core repulsion = 18742.945568 eV Total energy + Delta-G solvation = -3184.824692 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99333 -38.65994 -36.99641 -35.48437 -33.34461 -32.65479 -31.47129 -30.55710 -28.30971 -27.23470 -25.29158 -24.55667 -23.15495 -22.14208 -21.51027 -19.46353 -18.54886 -17.07936 -16.44209 -16.23382 -16.06752 -15.23793 -14.87777 -14.34491 -14.26122 -14.20034 -13.89723 -13.82434 -13.44683 -13.40211 -13.22845 -13.11511 -12.57716 -12.38038 -12.12208 -12.03895 -11.84366 -11.15634 -10.93725 -10.83518 -10.68247 -10.53004 -10.24355 -10.10717 -9.87704 -9.76406 -9.67515 -9.57001 -8.46657 -8.12429 -7.25859 -6.06112 -4.15224 0.40480 0.86117 2.26515 2.69638 3.24996 3.29319 3.33670 3.37431 3.46784 3.70852 4.16509 4.38576 4.63122 4.75916 4.78648 4.94731 5.15378 5.24348 5.24452 5.27261 5.34707 5.43049 5.50948 5.69182 5.72576 5.73310 5.77683 5.93884 6.01000 6.12373 6.22336 6.52044 6.65852 6.75989 6.82283 7.06897 7.16040 7.21978 7.48788 7.81895 7.86086 7.96754 8.19408 8.24669 8.95220 9.52178 10.99119 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.003638 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.961858 B = 7695.223969 C = 8339.810269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.163 3.837 3 C -0.169 4.169 4 C 0.044 3.956 5 C 0.258 3.742 6 N -0.404 5.404 7 C -0.152 4.152 8 C 0.336 3.664 9 N -0.473 5.473 10 C 0.062 3.938 11 C 0.063 3.937 12 N -0.544 5.544 13 C 0.187 3.813 14 C -0.550 4.550 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.891 5.891 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.058 3.942 23 C 0.072 3.928 24 N -0.503 5.503 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.141 0.859 29 H 0.147 0.853 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.029 0.971 35 H 0.035 0.965 36 H 0.262 0.738 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.723 16.543 -0.019 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.024 3.976 3 C -0.193 4.193 4 C 0.033 3.967 5 C -0.058 4.058 6 N -0.079 5.079 7 C -0.177 4.177 8 C 0.104 3.896 9 N -0.190 5.190 10 C -0.063 4.063 11 C -0.066 4.066 12 N -0.268 5.268 13 C 0.062 3.938 14 C -0.589 4.589 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.071 4.071 23 C -0.054 4.054 24 N -0.219 5.219 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.159 0.841 29 H 0.164 0.836 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.146 16.987 -0.093 20.318 hybrid contribution 1.162 0.129 1.133 1.628 sum -9.984 17.116 1.039 19.843 Atomic orbital electron populations 1.20758 0.88168 1.03825 1.03459 1.21000 0.96973 0.87025 0.92578 1.21750 0.92132 1.00048 1.05368 1.15954 0.92072 0.87041 1.01649 1.25475 0.93437 0.92777 0.94132 1.81272 1.08193 1.10770 1.07669 1.21593 1.01685 0.90007 1.04450 1.19829 0.87668 0.90758 0.91394 1.59253 1.18771 0.99987 1.40947 1.22507 0.94460 0.99970 0.89397 1.21966 0.94114 0.88320 1.02221 1.62731 1.18807 1.04899 1.40369 1.19745 0.93185 0.84195 0.96710 1.21788 1.24247 1.05504 1.07357 0.92250 1.24958 0.96820 0.95691 0.96269 1.69948 1.39330 1.09338 1.34300 0.86598 0.80487 0.78073 0.83233 1.19785 1.20954 1.20964 1.22055 0.96023 0.94472 0.94563 1.22180 0.92443 0.88680 1.02128 1.67463 1.08871 1.29779 1.15770 0.90002 0.90472 0.90003 0.84124 0.83568 0.92983 0.90279 0.92787 0.90462 0.95311 0.94644 0.92841 0.93366 0.90691 0.90019 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 10.16 36.01 0.37 -0.30 16 2 C 0.16 1.55 6.77 -82.67 -0.56 0.99 16 3 C -0.17 -1.42 9.47 -39.01 -0.37 -1.79 16 4 C 0.04 0.43 5.75 -106.75 -0.61 -0.18 16 5 C 0.26 2.75 15.40 -22.47 -0.35 2.41 16 6 N -0.40 -5.09 18.54 41.84 0.78 -4.32 16 7 C -0.15 -1.67 8.95 -38.78 -0.35 -2.02 16 8 C 0.34 4.34 6.40 -155.05 -0.99 3.35 16 9 N -0.47 -6.98 4.73 -173.09 -0.82 -7.80 16 10 C 0.06 0.89 5.37 -3.76 -0.02 0.87 16 11 C 0.06 1.14 5.24 -3.76 -0.02 1.12 16 12 N -0.54 -11.04 4.92 -235.91 -1.16 -12.20 16 13 C 0.19 4.62 5.14 -4.97 -0.03 4.60 16 14 C -0.55 -14.60 7.66 -34.44 -0.26 -14.86 16 15 H 0.06 1.58 5.82 -52.49 -0.31 1.27 16 16 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 18 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.06 1.07 5.32 -3.77 -0.02 1.05 16 23 C 0.07 1.11 4.79 -3.77 -0.02 1.10 16 24 N -0.50 -6.20 8.58 -8.73 -0.07 -6.27 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 29 H 0.15 1.47 7.18 -52.48 -0.38 1.09 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.95 6.79 -51.93 -0.35 0.60 16 32 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.03 0.76 8.12 -51.93 -0.42 0.34 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.05 0.99 6.78 -51.93 -0.35 0.64 16 38 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 39 H 0.08 1.20 7.82 -51.93 -0.41 0.80 16 40 H 0.06 0.86 8.05 -51.93 -0.42 0.45 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -29.69 333.24 -9.36 -39.05 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.49 Total: -2.65 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -3.33 Total: -1.98 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.54 Total: -55.49 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.69 -9.36 -39.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.306 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds