Wall clock time and date at job start Tue Mar 31 2020 05:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37908 * 119.49616 * 2 1 4 4 C 1.40094 * 119.16164 * 180.02562 * 3 2 1 5 5 C 1.43199 * 120.88878 * 179.97438 * 4 3 2 6 6 N 4.80792 * 135.19388 * 359.97438 * 2 1 3 7 7 C 1.39654 * 118.21920 * 359.96359 * 4 3 2 8 8 C 1.38980 * 118.92732 * 0.02562 * 7 4 3 9 9 N 1.39038 * 119.64103 * 180.02562 * 8 7 4 10 10 C 1.46961 * 110.99478 * 303.79590 * 9 8 7 11 11 C 1.53053 * 109.36048 * 176.81351 * 10 9 8 12 12 N 1.46962 * 109.36346 * 58.39897 * 11 10 9 13 13 C 1.46900 * 110.99679 * 176.80952 * 12 11 10 14 14 C 1.50704 * 109.47012 * 58.97903 * 13 12 11 15 15 H 1.07998 * 119.99930 * 5.01220 * 14 13 12 16 16 C 1.37877 * 119.99818 * 185.00318 * 14 13 12 17 17 N 1.31512 * 120.00414 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99727 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47315 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46952 * 120.00633 * 18 16 14 21 21 H 1.48496 * 109.46967 * 240.00261 * 18 16 14 22 22 C 1.46951 * 110.88149 * 300.67883 * 12 11 10 23 23 C 1.46951 * 110.99777 * 179.97438 * 9 8 7 24 24 N 1.31926 * 119.49824 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47112 * 270.02333 * 1 2 3 26 26 H 1.09002 * 109.46872 * 30.02147 * 1 2 3 27 27 H 1.08996 * 109.46989 * 150.01675 * 1 2 3 28 28 H 1.08001 * 120.42134 * 0.02798 * 3 2 1 29 29 H 1.08003 * 120.53384 * 180.29157 * 7 4 3 30 30 H 1.09000 * 109.49012 * 296.77736 * 10 9 8 31 31 H 1.08991 * 109.48875 * 56.84592 * 10 9 8 32 32 H 1.09003 * 109.48880 * 298.43353 * 11 10 9 33 33 H 1.08998 * 109.48673 * 178.36531 * 11 10 9 34 34 H 1.08995 * 109.47136 * 178.97666 * 13 12 11 35 35 H 1.09001 * 109.47736 * 298.98009 * 13 12 11 36 36 H 0.96999 * 120.00413 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.48989 * 299.35562 * 22 12 11 38 38 H 1.09003 * 109.48896 * 179.29228 * 22 12 11 39 39 H 1.08998 * 109.48735 * 303.14879 * 23 9 8 40 40 H 1.08994 * 109.49291 * 63.19516 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1860 1.2003 0.0000 4 6 3.5870 1.1922 -0.0005 5 6 4.3293 2.4167 -0.0011 6 7 4.9182 3.3882 -0.0015 7 6 4.2401 -0.0422 -0.0003 8 6 3.4793 -1.2053 -0.0001 9 7 4.1143 -2.4423 0.0007 10 6 5.0341 -2.5627 -1.1391 11 6 5.7699 -3.9023 -1.0579 12 7 4.7897 -4.9974 -1.0577 13 6 5.4606 -6.3043 -1.0570 14 6 6.3411 -6.4162 0.1610 15 1 6.3354 -5.6336 0.9052 16 6 7.1537 -7.5179 0.3252 17 7 7.1609 -8.4708 -0.5812 18 14 8.2446 -7.6570 1.8352 19 1 8.0524 -6.4626 2.6965 20 1 7.8823 -8.8793 2.5967 21 1 9.6659 -7.7399 1.4131 22 6 3.8700 -4.8768 0.0820 23 6 3.1342 -3.5372 0.0015 24 7 2.1566 -1.1482 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8901 -0.5136 28 1 1.6447 2.1349 0.0005 29 1 5.3190 -0.0922 0.0040 30 1 4.4685 -2.5143 -2.0696 31 1 5.7576 -1.7481 -1.1101 32 1 6.3571 -3.9397 -0.1403 33 1 6.4314 -4.0065 -1.9179 34 1 4.7124 -7.0967 -1.0385 35 1 6.0697 -6.4006 -1.9557 36 1 7.7329 -9.2456 -0.4658 37 1 4.4356 -4.9253 1.0125 38 1 3.1464 -5.6916 0.0531 39 1 2.4730 -3.4329 0.8617 40 1 2.5464 -3.4998 -0.9156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601261481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:11 Heat of formation + Delta-G solvation = 66.336248 kcal Electronic energy + Delta-G solvation = -21928.590603 eV Core-core repulsion = 18742.945568 eV Total energy + Delta-G solvation = -3185.645035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90500 -39.91128 -37.93320 -36.87000 -34.57673 -34.12501 -32.54531 -31.89189 -29.65461 -28.31002 -26.85424 -25.57218 -24.46763 -23.63534 -22.67560 -20.90114 -19.52125 -18.46455 -17.88938 -17.34318 -16.92274 -16.66554 -16.18926 -15.84735 -15.64369 -15.36925 -15.01790 -14.87638 -14.61192 -14.50360 -14.23648 -14.02715 -13.86577 -13.52992 -13.20737 -13.03669 -12.92170 -12.79019 -12.75634 -12.44348 -12.27968 -12.14497 -11.83819 -11.75908 -11.45795 -10.97987 -10.63760 -10.59968 -10.54073 -9.11535 -9.01118 -8.14756 -6.33594 -0.39995 0.06736 1.36600 1.38893 1.42271 1.50069 1.85723 2.37550 2.38492 2.62135 2.85442 3.10631 3.34907 3.35493 3.87817 3.89564 3.99985 4.15853 4.18389 4.28250 4.43593 4.49910 4.54580 4.58102 4.69768 4.85568 4.92171 4.94978 5.01891 5.03785 5.11603 5.14399 5.25118 5.26202 5.35346 5.50450 5.69515 5.75658 6.02382 6.12019 6.24434 6.27066 6.49586 6.87059 6.98243 7.37958 8.87987 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.003638 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.961858 B = 7695.223969 C = 8339.810269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.156 3.844 3 C -0.146 4.146 4 C 0.043 3.957 5 C 0.281 3.719 6 N -0.438 5.438 7 C -0.152 4.152 8 C 0.315 3.685 9 N -0.487 5.487 10 C 0.074 3.926 11 C 0.064 3.936 12 N -0.543 5.543 13 C 0.201 3.799 14 C -0.553 4.553 15 H 0.057 0.943 16 C 0.013 3.987 17 N -0.926 5.926 18 Si 0.955 3.045 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.278 1.278 22 C 0.062 3.938 23 C 0.091 3.909 24 N -0.521 5.521 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.074 0.926 28 H 0.175 0.825 29 H 0.153 0.847 30 H 0.055 0.945 31 H 0.106 0.894 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.005 0.995 35 H 0.010 0.990 36 H 0.265 0.735 37 H 0.024 0.976 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.824 18.997 0.726 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.017 3.983 3 C -0.169 4.169 4 C 0.032 3.968 5 C -0.034 4.034 6 N -0.114 5.114 7 C -0.177 4.177 8 C 0.084 3.916 9 N -0.204 5.204 10 C -0.051 4.051 11 C -0.065 4.065 12 N -0.267 5.267 13 C 0.074 3.926 14 C -0.592 4.592 15 H 0.075 0.925 16 C -0.186 4.186 17 N -0.566 5.566 18 Si 0.781 3.219 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.204 1.204 22 C -0.067 4.067 23 C -0.036 4.036 24 N -0.237 5.237 25 H 0.111 0.889 26 H 0.123 0.877 27 H 0.092 0.908 28 H 0.192 0.808 29 H 0.170 0.830 30 H 0.073 0.927 31 H 0.125 0.875 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.023 0.977 35 H 0.028 0.972 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.261 19.474 0.655 23.021 hybrid contribution 1.384 -0.549 0.872 1.726 sum -10.877 18.925 1.527 21.881 Atomic orbital electron populations 1.20868 0.85836 1.04836 1.04452 1.21557 0.98420 0.86493 0.91829 1.22128 0.91506 1.01119 1.02190 1.15938 0.92644 0.86129 1.02072 1.25431 0.92625 0.92352 0.93024 1.81309 1.09147 1.11922 1.08977 1.21596 1.02007 0.89845 1.04285 1.19703 0.88211 0.90133 0.93552 1.59241 1.18981 1.00704 1.41445 1.22368 0.94863 0.98158 0.89756 1.21971 0.93983 0.89625 1.00895 1.62652 1.19083 1.03638 1.41317 1.19396 0.92106 0.86035 0.95069 1.21995 1.24282 1.05305 1.07645 0.92536 1.25772 0.98296 0.95411 0.99142 1.70061 1.40360 1.09979 1.36163 0.85550 0.78642 0.78099 0.79644 1.19320 1.20470 1.20379 1.22038 0.95400 0.96704 0.92574 1.21893 0.92090 0.87237 1.02377 1.67422 1.08743 1.31558 1.16019 0.88890 0.87744 0.90754 0.80784 0.82978 0.92702 0.87541 0.95083 0.90734 0.97725 0.97162 0.92627 0.95730 0.91059 0.89197 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.16 71.24 0.72 -0.21 16 2 C 0.16 2.45 6.77 42.47 0.29 2.73 16 3 C -0.15 -1.88 9.47 22.64 0.21 -1.67 16 4 C 0.04 0.72 5.75 -21.24 -0.12 0.60 16 5 C 0.28 5.29 15.40 88.33 1.36 6.66 16 6 N -0.44 -10.22 18.54 19.00 0.35 -9.87 16 7 C -0.15 -3.01 8.95 22.79 0.20 -2.80 16 8 C 0.32 7.58 6.40 133.02 0.85 8.44 16 9 N -0.49 -13.90 4.73 -701.52 -3.32 -17.22 16 10 C 0.07 2.07 5.37 86.31 0.46 2.53 16 11 C 0.06 2.36 5.24 86.31 0.45 2.81 16 12 N -0.54 -22.74 4.92 -900.27 -4.43 -27.17 16 13 C 0.20 10.37 5.14 85.56 0.44 10.81 16 14 C -0.55 -30.22 7.66 25.60 0.20 -30.03 16 15 H 0.06 3.08 5.82 -2.91 -0.02 3.06 16 16 C 0.01 0.74 5.46 84.66 0.46 1.20 16 17 N -0.93 -54.55 13.29 21.45 0.28 -54.26 16 18 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 C 0.06 2.34 5.32 86.31 0.46 2.80 16 23 C 0.09 2.77 4.79 86.31 0.41 3.18 16 24 N -0.52 -11.73 8.58 -181.54 -1.56 -13.29 16 25 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.10 0.39 8.07 -2.39 -0.02 0.37 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 29 H 0.15 2.75 7.18 -2.91 -0.02 2.73 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.11 2.38 6.79 -2.39 -0.02 2.36 16 32 H 0.03 1.28 6.62 -2.39 -0.02 1.27 16 33 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.00 0.26 8.12 -2.39 -0.02 0.24 16 35 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.02 1.04 6.78 -2.39 -0.02 1.03 16 38 H 0.07 2.69 8.12 -2.39 -0.02 2.67 16 39 H 0.09 2.59 7.82 -2.39 -0.02 2.57 16 40 H 0.05 1.66 8.05 -2.39 -0.02 1.64 16 Total: -1.00 -65.51 333.24 0.81 -64.70 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.05 Total: 4.32 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 6.41 Total: 7.05 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -8.67 Total: -121.82 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -65.51 0.81 -64.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.033 kcal (2) G-P(sol) polarization free energy of solvation -65.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds