Wall clock time and date at job start Tue Mar 31 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99507 * 2 1 4 4 H 1.48506 * 109.46614 * 264.59390 * 3 2 1 5 5 H 1.48489 * 109.47221 * 24.59449 * 3 2 1 6 6 H 1.48505 * 109.46908 * 144.59864 * 3 2 1 7 7 C 1.37873 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00032 * 345.26286 * 7 2 1 9 9 C 1.50692 * 119.99991 * 165.25837 * 7 2 1 10 10 C 1.53006 * 115.55402 * 294.30395 * 9 7 2 11 11 N 1.46900 * 109.46889 * 292.43323 * 10 9 7 12 12 C 1.46601 * 111.00101 * 47.81304 * 11 10 9 13 13 C 1.53715 * 110.95693 * 180.02562 * 12 11 10 14 14 N 1.45479 * 107.57114 * 304.05381 * 13 12 11 15 15 C 1.46406 * 117.87904 * 183.52125 * 14 13 12 16 16 C 1.54887 * 105.71654 * 207.59397 * 15 14 13 17 17 F 1.39898 * 110.34092 * 245.10190 * 16 15 14 18 18 F 1.39900 * 110.34332 * 122.95846 * 16 15 14 19 19 C 1.55404 * 105.06177 * 4.03078 * 16 15 14 20 20 C 1.48794 * 109.31787 * 63.27159 * 14 13 12 21 21 H 1.09002 * 111.70081 * 53.57902 * 20 14 13 22 22 C 1.47557 * 111.00010 * 173.98259 * 11 10 9 23 23 C 1.53004 * 117.50125 * 79.97547 * 9 7 2 24 24 C 1.53006 * 117.49916 * 148.63454 * 9 7 2 25 25 H 0.97001 * 120.00621 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47211 * 172.43105 * 10 9 7 27 27 H 1.08997 * 109.47071 * 52.43089 * 10 9 7 28 28 H 1.08995 * 109.18302 * 300.41030 * 12 11 10 29 29 H 1.09001 * 109.18010 * 59.64866 * 12 11 10 30 30 H 1.09001 * 109.83936 * 63.57030 * 13 12 11 31 31 H 1.08999 * 109.83871 * 184.47371 * 13 12 11 32 32 H 1.08993 * 110.22110 * 88.55304 * 15 14 13 33 33 H 1.09002 * 110.25695 * 326.65121 * 15 14 13 34 34 H 1.09008 * 110.92516 * 140.39407 * 19 16 15 35 35 H 1.08999 * 110.92657 * 264.01079 * 19 16 15 36 36 H 1.09005 * 109.86474 * 57.56549 * 22 11 10 37 37 H 1.09007 * 109.86059 * 296.54496 * 22 11 10 38 38 H 1.09002 * 117.50055 * 214.99938 * 23 9 7 39 39 H 1.09001 * 117.49205 * 0.02562 * 23 9 7 40 40 H 1.08994 * 117.49600 * 359.97438 * 24 9 7 41 41 H 1.09000 * 117.50218 * 144.97122 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.6107 1.9806 -1.3939 5 1 1.3940 2.6830 0.5827 6 1 3.4849 1.4760 0.8111 7 6 2.0046 -1.1940 0.0005 8 1 1.4913 -2.1138 0.2389 9 6 3.4743 -1.2155 -0.3315 10 6 3.8326 -0.8221 -1.7661 11 7 3.3357 -1.8472 -2.6935 12 6 1.9415 -2.1911 -2.3986 13 6 1.4228 -3.2642 -3.3692 14 7 1.6101 -2.7610 -4.7213 15 6 1.1161 -3.5787 -5.8307 16 6 2.0132 -3.2268 -7.0433 17 9 1.2580 -2.6030 -8.0421 18 9 2.6252 -4.3798 -7.5464 19 6 3.0826 -2.2478 -6.4838 20 6 3.0637 -2.5786 -4.9816 21 1 3.6274 -3.4884 -4.7751 22 6 3.5359 -1.4335 -4.0957 23 6 4.4545 -0.8207 0.7750 24 6 4.3356 -2.2846 0.3439 25 1 -0.4851 0.8400 -0.0004 26 1 4.9154 -0.7406 -1.8608 27 1 3.3738 0.1372 -2.0051 28 1 1.8737 -2.5682 -1.3783 29 1 1.3249 -1.2969 -2.4907 30 1 1.9874 -4.1871 -3.2365 31 1 0.3643 -3.4487 -3.1855 32 1 0.0770 -3.3312 -6.0476 33 1 1.2086 -4.6376 -5.5895 34 1 4.0623 -2.4533 -6.9154 35 1 2.7917 -1.2121 -6.6586 36 1 4.5927 -1.2367 -4.2765 37 1 2.9507 -0.5379 -4.3047 38 1 5.3546 -0.2807 0.4810 39 1 4.0361 -0.5458 1.7432 40 1 3.8392 -2.9721 1.0287 41 1 5.1572 -2.7081 -0.2339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602851124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:12 Heat of formation + Delta-G solvation = -60.467583 kcal Electronic energy + Delta-G solvation = -24241.254026 eV Core-core repulsion = 20599.421178 eV Total energy + Delta-G solvation = -3641.832848 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.155 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.98731 -48.11591 -40.95087 -39.00970 -36.15179 -34.27440 -33.52000 -30.87610 -29.32366 -27.96058 -26.83475 -24.36651 -23.23419 -22.99123 -22.39228 -20.95405 -20.45271 -18.65860 -18.42116 -17.86468 -17.23417 -16.87384 -16.58509 -16.04483 -15.67386 -15.60859 -15.39874 -15.17335 -15.03781 -14.75272 -14.58615 -14.45044 -13.92214 -13.70314 -13.53886 -13.32611 -13.01322 -12.92233 -12.60528 -12.41472 -12.21911 -12.05322 -12.04312 -11.98411 -11.60655 -11.44380 -11.25645 -10.81233 -10.44297 -10.20209 -9.49443 -9.01141 -8.24593 -6.15246 1.33114 1.40647 1.51012 2.39217 2.41148 2.70328 2.80626 2.97834 3.07931 3.29362 3.47653 3.58862 3.93705 4.05082 4.10300 4.18643 4.31951 4.35477 4.43694 4.50700 4.53138 4.55442 4.64435 4.71458 4.73111 4.78155 4.81753 4.91933 5.00994 5.03221 5.20006 5.31903 5.43573 5.57605 5.62689 5.78302 5.78915 6.00964 6.27567 6.38002 6.45859 6.78525 7.41454 8.89300 Molecular weight = 286.16amu Principal moments of inertia in cm(-1) A = 0.024630 B = 0.005036 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.542852 B = 5558.384644 C = 5849.521086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.031 3.969 3 Si 0.912 3.088 4 H -0.278 1.278 5 H -0.305 1.305 6 H -0.228 1.228 7 C -0.463 4.463 8 H 0.043 0.957 9 C -0.030 4.030 10 C 0.098 3.902 11 N -0.532 5.532 12 C 0.081 3.919 13 C 0.071 3.929 14 N -0.551 5.551 15 C 0.019 3.981 16 C 0.278 3.722 17 F -0.199 7.199 18 F -0.198 7.198 19 C -0.138 4.138 20 C 0.075 3.925 21 H 0.078 0.922 22 C 0.068 3.932 23 C -0.190 4.190 24 C -0.151 4.151 25 H 0.260 0.740 26 H 0.079 0.921 27 H 0.005 0.995 28 H 0.101 0.899 29 H 0.001 0.999 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.024 0.976 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.736 -5.385 -12.112 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.167 4.167 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.232 1.232 6 H -0.151 1.151 7 C -0.500 4.500 8 H 0.061 0.939 9 C -0.031 4.031 10 C -0.029 4.029 11 N -0.256 5.256 12 C -0.047 4.047 13 C -0.057 4.057 14 N -0.277 5.277 15 C -0.110 4.110 16 C 0.241 3.759 17 F -0.180 7.180 18 F -0.179 7.179 19 C -0.177 4.177 20 C -0.033 4.033 21 H 0.096 0.904 22 C -0.060 4.060 23 C -0.228 4.228 24 C -0.188 4.188 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.024 0.976 28 H 0.119 0.881 29 H 0.019 0.981 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.042 0.958 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.539 -5.276 -12.049 15.682 hybrid contribution -0.723 0.920 0.055 1.172 sum 7.815 -4.355 -11.993 14.963 Atomic orbital electron populations 1.70067 1.07970 1.27468 1.51924 1.25472 0.94769 1.01783 0.94673 0.86321 0.80789 0.80193 0.78908 1.20447 1.23219 1.15101 1.20222 0.91525 0.93000 1.45251 0.93923 1.19386 0.91333 1.02434 0.89935 1.21701 0.98291 0.91343 0.91603 1.61719 1.20233 1.41280 1.02379 1.22359 0.86761 0.95992 0.99568 1.22100 1.00698 0.96711 0.86169 1.62929 1.14111 1.48736 1.01930 1.23460 1.00171 0.98279 0.89054 1.22201 0.89180 0.80853 0.83627 1.93002 1.77717 1.82665 1.64628 1.93013 1.83835 1.51801 1.89207 1.23371 0.99521 1.00325 0.94472 1.22547 0.88349 0.99134 0.93303 0.90437 1.22078 1.01281 0.95026 0.87599 1.23070 1.01326 0.98558 0.99827 1.22689 1.02063 0.90951 1.03141 0.93095 0.90274 0.97643 0.88098 0.98105 0.93363 0.90826 0.87624 0.90411 0.85791 0.87400 0.88148 0.95805 0.88926 0.90913 0.90822 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.70 13.96 21.45 0.30 -55.40 16 2 C 0.03 1.72 5.23 84.65 0.44 2.16 16 3 Si 0.91 42.80 25.53 68.60 1.75 44.55 16 4 H -0.28 -12.91 6.63 99.48 0.66 -12.26 16 5 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 6 H -0.23 -9.72 5.81 99.48 0.58 -9.15 16 7 C -0.46 -23.90 5.87 25.60 0.15 -23.75 16 8 H 0.04 2.48 7.20 -2.91 -0.02 2.45 16 9 C -0.03 -1.25 0.57 -52.92 -0.03 -1.28 16 10 C 0.10 3.79 4.92 86.31 0.42 4.21 16 11 N -0.53 -19.11 4.75 -895.19 -4.25 -23.37 16 12 C 0.08 3.33 4.19 86.60 0.36 3.70 16 13 C 0.07 2.37 6.04 86.81 0.52 2.90 16 14 N -0.55 -16.28 4.66 -865.56 -4.03 -20.31 16 15 C 0.02 0.46 6.59 87.04 0.57 1.03 16 16 C 0.28 6.38 2.66 32.07 0.09 6.47 16 17 F -0.20 -5.03 17.11 44.97 0.77 -4.26 16 18 F -0.20 -4.62 17.11 44.97 0.77 -3.85 16 19 C -0.14 -2.83 6.22 31.70 0.20 -2.64 16 20 C 0.07 1.90 2.75 44.59 0.12 2.02 16 21 H 0.08 1.93 8.10 -2.39 -0.02 1.91 16 22 C 0.07 2.01 5.26 85.94 0.45 2.46 16 23 C -0.19 -7.15 7.74 30.62 0.24 -6.91 16 24 C -0.15 -5.50 9.96 30.62 0.30 -5.20 16 25 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.08 2.60 8.07 -2.39 -0.02 2.58 16 27 H 0.01 0.24 5.58 -2.39 -0.01 0.22 16 28 H 0.10 4.74 4.41 -2.39 -0.01 4.73 16 29 H 0.00 0.03 7.71 -2.39 -0.02 0.01 16 30 H 0.05 1.49 8.09 -2.39 -0.02 1.47 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.11 2.51 8.05 -2.39 -0.02 2.50 16 33 H 0.08 1.72 7.97 -2.39 -0.02 1.70 16 34 H 0.12 1.91 8.13 -2.38 -0.02 1.89 16 35 H 0.11 2.23 8.11 -2.39 -0.02 2.21 16 36 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 37 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.07 2.92 8.06 -2.39 -0.02 2.90 16 40 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -59.66 317.31 -0.01 -59.67 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.84 Total: 17.80 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 3.85 Total: -14.83 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -7.99 Total: -99.08 kcal Atomic # 9 Polarization: -9.65 SS G_CDS: 1.54 Total: -8.11 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.75 Total: 44.55 kcal Total: -59.66 -0.01 -59.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602851124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.797 kcal (2) G-P(sol) polarization free energy of solvation -59.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds