Wall clock time and date at job start Tue Mar 31 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.46941 * 2 1 4 4 C 1.46897 * 110.99901 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47096 * 179.97438 * 4 3 2 6 6 C 1.35359 * 126.75316 * 95.30034 * 5 4 3 7 7 N 1.35302 * 106.17546 * 180.12441 * 6 5 4 8 8 C 1.46500 * 125.86551 * 179.90209 * 7 6 5 9 9 C 1.50703 * 109.47108 * 124.71924 * 8 7 6 10 10 C 1.38633 * 119.75264 * 90.00144 * 9 8 7 11 11 C 1.37617 * 120.24769 * 179.97438 * 10 9 8 12 12 C 1.40712 * 119.74610 * 0.28046 * 11 10 9 13 13 C 1.41400 * 120.24377 * 179.70276 * 12 11 10 14 14 H 1.07999 * 120.00087 * 24.27936 * 13 12 11 15 15 C 1.39947 * 119.99564 * 204.28785 * 13 12 11 16 16 N 1.30821 * 120.00278 * 17.72524 * 15 13 12 17 17 Si 1.86794 * 119.99656 * 197.71822 * 15 13 12 18 18 H 1.48501 * 109.47529 * 60.00194 * 17 15 13 19 19 H 1.48506 * 109.47057 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47379 * 300.00118 * 17 15 13 21 21 C 1.40721 * 119.51082 * 359.46549 * 12 11 10 22 22 C 1.37617 * 119.74346 * 0.50994 * 21 12 11 23 23 N 1.28716 * 108.26990 * 359.64228 * 7 6 5 24 24 N 1.28635 * 110.17349 * 0.22297 * 23 7 6 25 25 H 1.09003 * 109.47135 * 299.99979 * 1 2 3 26 26 H 1.09001 * 109.47326 * 60.00096 * 1 2 3 27 27 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47259 * 240.00076 * 2 1 3 29 29 H 1.09001 * 109.47326 * 119.99904 * 2 1 3 30 30 H 1.00900 * 110.99630 * 303.95395 * 3 2 1 31 31 H 1.09002 * 109.47035 * 60.00080 * 4 3 2 32 32 H 1.08999 * 109.47603 * 300.00456 * 4 3 2 33 33 H 1.08000 * 126.90777 * 0.02562 * 6 5 4 34 34 H 1.09002 * 109.47179 * 4.71808 * 8 7 6 35 35 H 1.09004 * 109.47652 * 244.71538 * 8 7 6 36 36 H 1.07997 * 119.87048 * 359.95699 * 10 9 8 37 37 H 1.08001 * 120.12635 * 179.97438 * 11 10 9 38 38 H 0.96999 * 120.00115 * 179.97438 * 16 15 13 39 39 H 1.07999 * 120.12797 * 180.25726 * 21 12 11 40 40 H 1.08001 * 119.87226 * 179.74551 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4880 1.4242 0.0006 5 6 3.9522 2.8579 0.0000 6 6 4.2966 3.5983 1.0796 7 7 4.6425 4.8175 0.6057 8 6 5.0865 5.9574 1.4119 9 6 6.4240 6.4371 0.9098 10 6 6.4800 7.4085 -0.0777 11 6 7.6958 7.8544 -0.5433 12 6 8.8848 7.3163 -0.0173 13 6 10.1397 7.7623 -0.4925 14 1 10.2309 8.7408 -0.9401 15 6 11.2635 6.9354 -0.3827 16 7 11.1139 5.6527 -0.1736 17 14 12.9770 7.6634 -0.5351 18 1 13.1775 8.6837 0.5250 19 1 13.9878 6.5860 -0.3834 20 1 13.1280 8.2990 -1.8688 21 6 8.8159 6.3347 0.9886 22 6 7.5890 5.9041 1.4395 23 7 4.5198 4.8022 -0.6755 24 7 4.1100 3.6478 -1.0681 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6440 1.9013 -0.7814 31 1 3.8653 0.9202 -0.8892 32 1 3.8647 0.9204 0.8908 33 1 4.2940 3.2802 2.1117 34 1 5.1780 5.6516 2.4541 35 1 4.3580 6.7643 1.3326 36 1 5.5660 7.8165 -0.4833 37 1 7.7372 8.6109 -1.3130 38 1 11.8928 5.0796 -0.0979 39 1 9.7222 5.9179 1.4023 40 1 7.5337 5.1478 2.2085 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603221770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:57 Heat of formation + Delta-G solvation = 105.953406 kcal Electronic energy + Delta-G solvation = -21179.114328 eV Core-core repulsion = 17995.187222 eV Total energy + Delta-G solvation = -3183.927106 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.76476 -37.82699 -36.75959 -34.75697 -33.42327 -32.02002 -30.47965 -29.56474 -29.32365 -27.38286 -25.17883 -24.39515 -22.22617 -21.71040 -21.19164 -20.95318 -19.75783 -17.43871 -16.84108 -16.17157 -16.01187 -15.40879 -15.01935 -14.78305 -14.29447 -14.22465 -13.89462 -13.80693 -13.09117 -12.83269 -12.67088 -12.13085 -12.12720 -12.03937 -11.82373 -11.72277 -11.37453 -11.21162 -11.14709 -11.00736 -10.83569 -10.58541 -10.41207 -9.98551 -9.53667 -9.44919 -9.26670 -8.88338 -8.51463 -7.62592 -7.50399 -6.91340 -4.51515 2.07774 2.39152 2.85456 2.92837 2.97285 2.99450 3.02171 3.32205 3.82122 4.20245 4.48197 4.66242 4.85901 4.94922 5.05226 5.16811 5.24154 5.30016 5.47414 5.50719 5.60060 5.62826 5.73456 5.77021 5.82877 5.95776 6.13426 6.25816 6.30252 6.47151 6.82419 6.86167 6.92809 7.07483 7.12396 7.21045 7.23767 7.46460 7.68202 7.90269 7.92252 8.14773 8.48514 8.73804 8.81553 9.01391 10.02337 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.030626 B = 0.002945 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.044301 B = 9503.763257 C = 9941.775333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 N -0.688 5.688 4 C 0.152 3.848 5 C -0.036 4.036 6 C -0.042 4.042 7 N -0.271 5.271 8 C 0.175 3.825 9 C -0.257 4.257 10 C -0.049 4.049 11 C -0.230 4.230 12 C 0.121 3.879 13 C -0.454 4.454 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.784 5.784 17 Si 0.912 3.088 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.171 4.171 22 C -0.077 4.077 23 N -0.065 5.065 24 N -0.285 5.285 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.346 0.654 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.182 0.818 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.284 0.716 39 H 0.119 0.881 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.662 -7.489 4.872 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 N -0.320 5.320 4 C 0.021 3.979 5 C -0.175 4.175 6 C -0.194 4.194 7 N -0.064 5.064 8 C 0.058 3.942 9 C -0.260 4.260 10 C -0.068 4.068 11 C -0.250 4.250 12 C 0.118 3.882 13 C -0.482 4.482 14 H 0.099 0.901 15 C -0.145 4.145 16 N -0.408 5.408 17 Si 0.736 3.264 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.188 1.188 21 C -0.191 4.191 22 C -0.097 4.097 23 N -0.045 5.045 24 N -0.151 5.151 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.164 0.836 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.199 0.801 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.431 -6.804 4.293 13.978 hybrid contribution 1.045 -0.626 0.098 1.222 sum -10.386 -7.430 4.391 13.504 Atomic orbital electron populations 1.21762 0.95002 1.01563 1.02466 1.21920 0.95679 0.89490 1.00544 1.60540 1.07464 1.13370 1.50647 1.19958 0.87384 0.89032 1.01508 1.21620 1.07934 0.98242 0.89723 1.23297 1.07807 0.86815 1.01509 1.48147 1.40403 1.11310 1.06533 1.20857 0.96219 0.84682 0.92491 1.18717 0.91145 1.07557 1.08562 1.20348 0.96450 0.95423 0.94554 1.20963 0.92294 1.07043 1.04663 1.17695 0.92304 0.89602 0.88577 1.19682 0.92244 1.02154 1.34158 0.90097 1.25998 1.01924 0.94252 0.92317 1.69819 1.33169 1.04337 1.33445 0.86303 0.80299 0.79693 0.80131 1.18636 1.20201 1.18805 1.21263 0.95954 1.02384 0.99476 1.20477 0.92871 0.97773 0.98539 1.78301 1.16684 1.16127 0.93374 1.75014 1.16000 0.97833 1.26262 0.91850 0.92821 0.92266 0.95266 0.90976 0.83620 0.93587 0.89642 0.80113 0.88620 0.89207 0.89081 0.88674 0.90513 0.86327 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.17 37.15 0.38 -0.75 16 2 C 0.05 0.46 6.40 -3.82 -0.02 0.44 16 3 N -0.69 -7.63 6.49 -115.06 -0.75 -8.38 16 4 C 0.15 1.85 6.25 -4.98 -0.03 1.82 16 5 C -0.04 -0.57 6.76 -82.77 -0.56 -1.13 16 6 C -0.04 -0.63 11.50 -17.05 -0.20 -0.83 16 7 N -0.27 -4.76 3.43 -62.44 -0.21 -4.97 16 8 C 0.18 2.82 6.57 -5.19 -0.03 2.78 16 9 C -0.26 -5.30 5.27 -104.33 -0.55 -5.85 16 10 C -0.05 -1.07 9.67 -39.66 -0.38 -1.46 16 11 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 12 C 0.12 3.16 5.57 -106.82 -0.60 2.57 16 13 C -0.45 -11.75 9.05 -37.74 -0.34 -12.09 16 14 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 15 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 16 N -0.78 -19.92 10.95 55.55 0.61 -19.31 16 17 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 18 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 19 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 21 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 22 C -0.08 -1.72 9.67 -39.66 -0.38 -2.11 16 23 N -0.07 -1.34 12.92 60.35 0.78 -0.56 16 24 N -0.28 -5.54 12.41 33.29 0.41 -5.13 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.35 4.04 8.72 -39.29 -0.34 3.70 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.18 2.01 8.06 -52.49 -0.42 1.59 16 34 H 0.10 1.23 8.01 -51.93 -0.42 0.82 16 35 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 36 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 39 H 0.12 3.09 6.16 -52.49 -0.32 2.76 16 40 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -29.24 344.05 -8.24 -37.48 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.70 Total: 8.06 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -3.53 Total: -25.49 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.84 Total: -38.34 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.24 -8.24 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603221770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.431 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds