Wall clock time and date at job start Tue Mar 31 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 110.99739 * 2 1 4 4 H 1.09003 * 109.47571 * 324.99754 * 3 2 1 5 5 C 1.52998 * 109.47371 * 84.99775 * 3 2 1 6 6 C 1.50708 * 109.47169 * 204.99823 * 3 2 1 7 7 C 1.35343 * 126.75254 * 154.70694 * 6 3 2 8 8 N 1.35311 * 106.17304 * 179.85126 * 7 6 3 9 9 C 1.46506 * 125.86992 * 180.11803 * 8 7 6 10 10 C 1.50702 * 109.47072 * 125.32622 * 9 8 7 11 11 C 1.38629 * 119.75463 * 269.73144 * 10 9 8 12 12 C 1.37617 * 120.24828 * 179.72296 * 11 10 9 13 13 C 1.40711 * 119.74497 * 0.56900 * 12 11 10 14 14 C 1.41394 * 120.24403 * 179.68341 * 13 12 11 15 15 H 1.07996 * 120.00043 * 24.40306 * 14 13 12 16 16 C 1.39952 * 119.99995 * 204.40673 * 14 13 12 17 17 N 1.30819 * 119.99875 * 17.86298 * 16 14 13 18 18 Si 1.86794 * 119.99977 * 197.86603 * 16 14 13 19 19 H 1.48506 * 109.46996 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47189 * 119.99877 * 18 16 14 21 21 H 1.48502 * 109.47332 * 240.00031 * 18 16 14 22 22 C 1.40711 * 119.51291 * 359.70640 * 13 12 11 23 23 C 1.37626 * 119.74413 * 359.97438 * 22 13 12 24 24 N 1.28712 * 108.26414 * 0.42422 * 8 7 6 25 25 N 1.28629 * 110.17933 * 359.73028 * 24 8 7 26 26 H 1.08994 * 109.46472 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47179 * 300.00198 * 1 2 3 28 28 H 1.08999 * 109.46713 * 60.00579 * 1 2 3 29 29 H 1.00897 * 111.00420 * 236.04798 * 2 1 3 30 30 H 1.09001 * 109.46919 * 60.00036 * 5 3 2 31 31 H 1.09003 * 109.47541 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.47067 * 299.99902 * 5 3 2 33 33 H 1.08003 * 126.91624 * 0.02562 * 7 6 3 34 34 H 1.08994 * 109.47517 * 245.33296 * 9 8 7 35 35 H 1.09008 * 109.46659 * 5.33238 * 9 8 7 36 36 H 1.08006 * 119.87153 * 359.97438 * 11 10 9 37 37 H 1.08006 * 120.12598 * 180.27847 * 12 11 10 38 38 H 0.97001 * 120.00207 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.13193 * 179.97438 * 22 13 12 40 40 H 1.08000 * 119.87562 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3398 2.0124 -0.5895 5 6 2.0608 1.8927 1.4370 6 6 3.3777 1.3790 -0.6005 7 6 3.9924 2.4224 -1.2049 8 7 5.2117 1.9739 -1.5830 9 6 6.2373 2.7571 -2.2766 10 6 7.5249 2.7024 -1.4955 11 6 7.7834 3.6603 -0.5272 12 6 8.9534 3.6167 0.1961 13 6 9.8942 2.6019 -0.0586 14 6 11.1027 2.5510 0.6736 15 1 11.1595 3.0007 1.6539 16 6 12.2254 1.9180 0.1281 17 7 12.2848 1.6858 -1.1579 18 14 13.6388 1.4048 1.2363 19 1 13.3284 1.7784 2.6396 20 1 13.8303 -0.0650 1.1456 21 1 14.8816 2.0934 0.8045 22 6 9.6238 1.6383 -1.0477 23 6 8.4442 1.6975 -1.7543 24 7 5.3132 0.7390 -1.2344 25 7 4.2361 0.3541 -0.6460 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8307 -0.5261 -0.7813 30 1 2.7165 1.2519 2.0264 31 1 2.4518 2.9102 1.4370 32 1 1.0611 1.8873 1.8712 33 1 3.5916 3.4143 -1.3529 34 1 6.3986 2.3440 -3.2723 35 1 5.9078 3.7926 -2.3619 36 1 7.0620 4.4413 -0.3371 37 1 9.1507 4.3614 0.9531 38 1 13.0628 1.2467 -1.5361 39 1 10.3391 0.8553 -1.2517 40 1 8.2343 0.9588 -2.5136 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603223945.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:19 Heat of formation + Delta-G solvation = 111.490690 kcal Electronic energy + Delta-G solvation = -21518.825386 eV Core-core repulsion = 18335.138395 eV Total energy + Delta-G solvation = -3183.686991 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.86017 -37.86374 -36.99926 -34.69409 -33.35697 -31.68417 -30.49320 -29.42585 -29.15778 -27.40855 -25.59964 -24.40367 -22.85360 -21.70599 -21.17621 -20.57229 -19.63041 -17.44682 -17.12347 -16.15153 -15.77348 -15.42901 -15.14209 -14.64986 -14.18494 -14.03205 -13.89239 -13.81547 -13.06423 -12.68492 -12.65939 -12.27781 -12.09786 -11.95706 -11.77988 -11.67801 -11.45827 -11.28399 -11.14638 -10.90868 -10.81810 -10.56998 -10.48116 -9.91620 -9.60670 -9.43481 -9.27100 -8.88289 -8.49303 -7.61345 -7.53153 -6.92043 -4.51627 1.98961 2.35703 2.86470 2.88776 2.97080 3.01714 3.06754 3.28744 3.83165 4.10166 4.44400 4.50364 4.91495 5.03106 5.11959 5.20013 5.29506 5.44677 5.45650 5.50637 5.58926 5.70214 5.71905 5.74790 5.82983 6.05847 6.18960 6.27103 6.29455 6.41413 6.82258 6.92187 6.97184 7.00987 7.12279 7.19758 7.33645 7.46063 7.65810 7.91652 7.92019 8.14058 8.49614 8.73748 8.81469 8.97696 10.01711 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.028985 B = 0.003176 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.770954 B = 8813.053510 C = 9019.536386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.682 5.682 3 C 0.178 3.822 4 H 0.054 0.946 5 C -0.135 4.135 6 C -0.042 4.042 7 C -0.059 4.059 8 N -0.268 5.268 9 C 0.175 3.825 10 C -0.257 4.257 11 C -0.065 4.065 12 C -0.231 4.231 13 C 0.121 3.879 14 C -0.453 4.453 15 H 0.081 0.919 16 C 0.075 3.925 17 N -0.783 5.783 18 Si 0.910 3.090 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.273 1.273 22 C -0.170 4.170 23 C -0.061 4.061 24 N -0.065 5.065 25 N -0.268 5.268 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.018 0.982 29 H 0.351 0.649 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.181 0.819 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.283 0.717 39 H 0.120 0.880 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.105 2.281 -1.705 15.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.314 5.314 3 C 0.066 3.934 4 H 0.072 0.928 5 C -0.194 4.194 6 C -0.181 4.181 7 C -0.211 4.211 8 N -0.062 5.062 9 C 0.057 3.943 10 C -0.259 4.259 11 C -0.084 4.084 12 C -0.251 4.251 13 C 0.118 3.882 14 C -0.482 4.482 15 H 0.099 0.901 16 C -0.144 4.144 17 N -0.407 5.407 18 Si 0.734 3.266 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.198 1.198 22 C -0.189 4.189 23 C -0.080 4.080 24 N -0.045 5.045 25 N -0.134 5.134 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.170 0.830 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.198 0.802 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.138 0.862 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.953 0.884 -1.250 14.037 hybrid contribution -0.028 1.243 -0.585 1.374 sum -13.982 2.127 -1.835 14.261 Atomic orbital electron populations 1.22260 0.88091 1.01826 1.00079 1.60319 1.06908 1.13061 1.51093 1.19659 0.87708 0.90073 0.95920 0.92788 1.21781 1.01921 1.00504 0.95164 1.21834 0.99045 0.91668 1.05578 1.23243 0.88429 1.02182 1.07240 1.48200 1.11854 1.09345 1.36774 1.20854 0.85143 0.93693 0.94603 1.18686 0.96082 1.04096 1.07076 1.20318 0.96209 0.96576 0.95269 1.20920 0.97451 1.01424 1.05269 1.17700 0.91618 0.88688 0.90156 1.19736 0.94553 1.30717 1.03151 0.90101 1.25987 1.00184 0.93182 0.95071 1.69819 1.29271 1.29763 1.11840 0.86224 0.79831 0.79227 0.81315 1.18236 1.19453 1.19829 1.21298 0.96557 1.00720 1.00328 1.20484 0.93849 0.95599 0.98106 1.78370 1.17683 0.95070 1.13370 1.75072 0.97596 1.25516 1.15228 0.91428 0.91728 0.96318 0.82996 0.91502 0.92440 0.92456 0.80223 0.89129 0.88703 0.89629 0.88800 0.90583 0.86223 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.50 60.07 0.63 0.87 16 2 N -0.68 -8.19 6.58 -115.24 -0.76 -8.95 16 3 C 0.18 2.13 3.10 -68.86 -0.21 1.91 16 4 H 0.05 0.54 7.80 -51.93 -0.41 0.14 16 5 C -0.14 -1.54 9.40 37.16 0.35 -1.19 16 6 C -0.04 -0.63 5.93 -82.77 -0.49 -1.12 16 7 C -0.06 -0.82 11.50 -17.05 -0.20 -1.02 16 8 N -0.27 -4.52 3.43 -62.44 -0.21 -4.74 16 9 C 0.17 2.76 6.57 -5.19 -0.03 2.72 16 10 C -0.26 -5.26 5.27 -104.33 -0.55 -5.81 16 11 C -0.06 -1.38 9.67 -39.66 -0.38 -1.76 16 12 C -0.23 -5.51 9.80 -38.87 -0.38 -5.89 16 13 C 0.12 3.17 5.57 -106.83 -0.60 2.57 16 14 C -0.45 -11.74 9.05 -37.74 -0.34 -12.08 16 15 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 16 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 17 N -0.78 -19.59 10.95 55.55 0.61 -18.98 16 18 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 19 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 22 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 23 C -0.06 -1.39 9.67 -39.66 -0.38 -1.78 16 24 N -0.07 -1.30 12.92 60.35 0.78 -0.52 16 25 N -0.27 -5.04 11.96 33.29 0.40 -4.64 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.53 7.44 -51.93 -0.39 0.14 16 28 H 0.02 0.15 8.06 -51.93 -0.42 -0.27 16 29 H 0.35 4.47 8.18 -39.29 -0.32 4.15 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 33 H 0.18 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.09 1.30 8.08 -51.93 -0.42 0.89 16 35 H 0.09 1.18 8.01 -51.92 -0.42 0.77 16 36 H 0.09 1.57 8.06 -52.48 -0.42 1.14 16 37 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 38 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 39 H 0.12 3.17 6.15 -52.49 -0.32 2.85 16 40 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -29.01 340.66 -7.69 -36.69 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.58 Total: 8.31 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: -3.02 Total: -25.50 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.81 Total: -37.82 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.01 -7.69 -36.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603223945.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.183 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds