Wall clock time and date at job start Tue Mar 31 2020 05:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 110.99739 * 2 1 4 4 H 1.09003 * 109.47571 * 324.99754 * 3 2 1 5 5 C 1.52998 * 109.47371 * 84.99775 * 3 2 1 6 6 C 1.50708 * 109.47169 * 204.99823 * 3 2 1 7 7 C 1.35343 * 126.75254 * 154.70694 * 6 3 2 8 8 N 1.35311 * 106.17304 * 179.85126 * 7 6 3 9 9 C 1.46506 * 125.86992 * 180.11803 * 8 7 6 10 10 C 1.50702 * 109.47072 * 125.32622 * 9 8 7 11 11 C 1.38629 * 119.75463 * 269.73144 * 10 9 8 12 12 C 1.37617 * 120.24828 * 179.72296 * 11 10 9 13 13 C 1.40711 * 119.74497 * 0.56900 * 12 11 10 14 14 C 1.41394 * 120.24403 * 179.68341 * 13 12 11 15 15 H 1.07996 * 120.00043 * 24.40306 * 14 13 12 16 16 C 1.39952 * 119.99995 * 204.40673 * 14 13 12 17 17 N 1.30819 * 119.99875 * 17.86298 * 16 14 13 18 18 Si 1.86794 * 119.99977 * 197.86603 * 16 14 13 19 19 H 1.48506 * 109.46996 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47189 * 119.99877 * 18 16 14 21 21 H 1.48502 * 109.47332 * 240.00031 * 18 16 14 22 22 C 1.40711 * 119.51291 * 359.70640 * 13 12 11 23 23 C 1.37626 * 119.74413 * 359.97438 * 22 13 12 24 24 N 1.28712 * 108.26414 * 0.42422 * 8 7 6 25 25 N 1.28629 * 110.17933 * 359.73028 * 24 8 7 26 26 H 1.08994 * 109.46472 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47179 * 300.00198 * 1 2 3 28 28 H 1.08999 * 109.46713 * 60.00579 * 1 2 3 29 29 H 1.00897 * 111.00420 * 236.04798 * 2 1 3 30 30 H 1.09001 * 109.46919 * 60.00036 * 5 3 2 31 31 H 1.09003 * 109.47541 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.47067 * 299.99902 * 5 3 2 33 33 H 1.08003 * 126.91624 * 0.02562 * 7 6 3 34 34 H 1.08994 * 109.47517 * 245.33296 * 9 8 7 35 35 H 1.09008 * 109.46659 * 5.33238 * 9 8 7 36 36 H 1.08006 * 119.87153 * 359.97438 * 11 10 9 37 37 H 1.08006 * 120.12598 * 180.27847 * 12 11 10 38 38 H 0.97001 * 120.00207 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.13193 * 179.97438 * 22 13 12 40 40 H 1.08000 * 119.87562 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3398 2.0124 -0.5895 5 6 2.0608 1.8927 1.4370 6 6 3.3777 1.3790 -0.6005 7 6 3.9924 2.4224 -1.2049 8 7 5.2117 1.9739 -1.5830 9 6 6.2373 2.7571 -2.2766 10 6 7.5249 2.7024 -1.4955 11 6 7.7834 3.6603 -0.5272 12 6 8.9534 3.6167 0.1961 13 6 9.8942 2.6019 -0.0586 14 6 11.1027 2.5510 0.6736 15 1 11.1595 3.0007 1.6539 16 6 12.2254 1.9180 0.1281 17 7 12.2848 1.6858 -1.1579 18 14 13.6388 1.4048 1.2363 19 1 13.3284 1.7784 2.6396 20 1 13.8303 -0.0650 1.1456 21 1 14.8816 2.0934 0.8045 22 6 9.6238 1.6383 -1.0477 23 6 8.4442 1.6975 -1.7543 24 7 5.3132 0.7390 -1.2344 25 7 4.2361 0.3541 -0.6460 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8307 -0.5261 -0.7813 30 1 2.7165 1.2519 2.0264 31 1 2.4518 2.9102 1.4370 32 1 1.0611 1.8873 1.8712 33 1 3.5916 3.4143 -1.3529 34 1 6.3986 2.3440 -3.2723 35 1 5.9078 3.7926 -2.3619 36 1 7.0620 4.4413 -0.3371 37 1 9.1507 4.3614 0.9531 38 1 13.0628 1.2467 -1.5361 39 1 10.3391 0.8553 -1.2517 40 1 8.2343 0.9588 -2.5136 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603223945.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:18 Heat of formation + Delta-G solvation = 93.019737 kcal Electronic energy + Delta-G solvation = -21519.626346 eV Core-core repulsion = 18335.138395 eV Total energy + Delta-G solvation = -3184.487952 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.09383 -39.58771 -37.94171 -36.24862 -34.92350 -32.69009 -32.13904 -31.22716 -30.19895 -28.96865 -26.45254 -26.02753 -23.93982 -23.00389 -22.93439 -22.05023 -20.89783 -19.29731 -18.26493 -17.46500 -17.19892 -16.76045 -16.06664 -15.99761 -15.66888 -15.54012 -15.34551 -14.88843 -14.37675 -13.89475 -13.85507 -13.79387 -13.44899 -13.28460 -13.07595 -12.92949 -12.80585 -12.68523 -12.49525 -12.31898 -12.22275 -11.93188 -11.74042 -11.57122 -11.37051 -11.07322 -10.83967 -10.05076 -9.44043 -9.35812 -9.31512 -8.72303 -6.42753 0.67068 0.87855 1.10698 1.34369 1.39504 1.50064 1.64853 1.86237 2.16166 2.69702 3.23465 3.41214 3.67587 3.89388 3.97956 4.10486 4.26954 4.38211 4.39915 4.43053 4.46510 4.53162 4.61365 4.71983 4.87343 4.90766 4.98063 5.03765 5.09369 5.11363 5.27207 5.31714 5.37440 5.41182 5.63044 5.81371 5.85269 6.03879 6.10571 6.17547 6.30590 6.43191 6.63413 6.86150 6.95318 7.72203 8.24480 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.028985 B = 0.003176 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.770954 B = 8813.053510 C = 9019.536386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.702 5.702 3 C 0.179 3.821 4 H 0.084 0.916 5 C -0.132 4.132 6 C -0.049 4.049 7 C -0.040 4.040 8 N -0.273 5.273 9 C 0.177 3.823 10 C -0.240 4.240 11 C -0.064 4.064 12 C -0.251 4.251 13 C 0.088 3.912 14 C -0.496 4.496 15 H 0.076 0.924 16 C 0.035 3.965 17 N -0.817 5.817 18 Si 0.982 3.018 19 H -0.259 1.259 20 H -0.265 1.265 21 H -0.261 1.261 22 C -0.198 4.198 23 C -0.069 4.069 24 N -0.121 5.121 25 N -0.298 5.298 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.343 0.657 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.232 0.768 34 H 0.105 0.895 35 H 0.143 0.857 36 H 0.127 0.873 37 H 0.098 0.902 38 H 0.290 0.710 39 H 0.097 0.903 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.759 4.090 -2.063 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.334 5.334 3 C 0.067 3.933 4 H 0.102 0.898 5 C -0.190 4.190 6 C -0.190 4.190 7 C -0.192 4.192 8 N -0.066 5.066 9 C 0.059 3.941 10 C -0.242 4.242 11 C -0.083 4.083 12 C -0.270 4.270 13 C 0.085 3.915 14 C -0.525 4.525 15 H 0.094 0.906 16 C -0.181 4.181 17 N -0.442 5.442 18 Si 0.802 3.198 19 H -0.182 1.182 20 H -0.190 1.190 21 H -0.186 1.186 22 C -0.218 4.218 23 C -0.088 4.088 24 N -0.100 5.100 25 N -0.163 5.163 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.161 0.839 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.248 0.752 34 H 0.123 0.877 35 H 0.161 0.839 36 H 0.144 0.856 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.617 2.687 -1.610 16.909 hybrid contribution 0.510 0.718 -0.541 1.034 sum -16.107 3.405 -2.151 16.603 Atomic orbital electron populations 1.22313 0.86202 1.02550 1.01015 1.60341 1.08783 1.13280 1.50975 1.19828 0.86490 0.90646 0.96297 0.89847 1.21764 1.02395 1.00315 0.94533 1.22459 0.99934 0.91168 1.05419 1.24019 0.86795 1.03682 1.04706 1.48078 1.12901 1.08770 1.36848 1.21007 0.82774 0.96362 0.93997 1.19139 0.97359 1.01821 1.05877 1.20732 0.95826 0.97451 0.94253 1.21167 0.98418 1.01217 1.06208 1.18034 0.92688 0.89759 0.90982 1.19936 0.95762 1.33264 1.03509 0.90586 1.26794 1.02369 0.92604 0.96317 1.69864 1.30425 1.30660 1.13261 0.85167 0.76712 0.78838 0.79094 1.18218 1.19010 1.18551 1.21249 0.97662 1.00928 1.01964 1.20724 0.93546 0.96625 0.97936 1.78365 1.18905 0.96860 1.15898 1.75013 0.98253 1.27395 1.15669 0.90982 0.90913 0.95036 0.83897 0.94681 0.91264 0.90535 0.75204 0.87729 0.83890 0.85554 0.88333 0.89915 0.88482 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.50 127.69 1.34 1.77 16 2 N -0.70 -15.60 6.58 -518.52 -3.41 -19.01 16 3 C 0.18 3.72 3.10 44.17 0.14 3.86 16 4 H 0.08 1.27 7.80 -2.39 -0.02 1.25 16 5 C -0.13 -2.64 9.40 71.98 0.68 -1.97 16 6 C -0.05 -1.36 5.93 41.60 0.25 -1.12 16 7 C -0.04 -0.93 11.50 83.49 0.96 0.03 16 8 N -0.27 -8.33 3.43 -351.46 -1.21 -9.54 16 9 C 0.18 4.86 6.57 85.63 0.56 5.42 16 10 C -0.24 -9.36 5.27 -19.68 -0.10 -9.47 16 11 C -0.06 -2.58 9.67 22.22 0.21 -2.37 16 12 C -0.25 -12.07 9.80 22.73 0.22 -11.85 16 13 C 0.09 4.79 5.57 -21.29 -0.12 4.67 16 14 C -0.50 -27.05 9.05 23.46 0.21 -26.84 16 15 H 0.08 4.02 7.91 -2.91 -0.02 3.99 16 16 C 0.04 1.79 5.14 85.26 0.44 2.22 16 17 N -0.82 -42.83 10.95 21.83 0.24 -42.59 16 18 Si 0.98 38.57 29.59 68.60 2.03 40.60 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 22 C -0.20 -10.63 8.70 22.73 0.20 -10.43 16 23 C -0.07 -3.20 9.67 22.22 0.21 -2.98 16 24 N -0.12 -4.73 12.92 37.02 0.48 -4.25 16 25 N -0.30 -10.99 11.96 -48.60 -0.58 -11.57 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 0.97 7.44 -2.39 -0.02 0.95 16 28 H 0.03 0.40 8.06 -2.39 -0.02 0.38 16 29 H 0.34 8.42 8.18 -89.70 -0.73 7.69 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.22 7.45 -2.39 -0.02 1.20 16 33 H 0.23 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.10 2.63 8.08 -2.39 -0.02 2.61 16 35 H 0.14 2.62 8.01 -2.38 -0.02 2.60 16 36 H 0.13 4.04 8.06 -2.91 -0.02 4.01 16 37 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 38 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 39 H 0.10 5.52 6.15 -2.91 -0.02 5.50 16 40 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -68.43 340.66 3.06 -65.36 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: 0.31 Total: 30.06 kcal Atomic # 6 Polarization: -54.26 SS G_CDS: 5.20 Total: -49.06 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -4.48 Total: -86.96 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -68.43 3.06 -65.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603223945.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.381 kcal (2) G-P(sol) polarization free energy of solvation -68.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds