Wall clock time and date at job start Tue Mar 31 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46894 * 109.47347 * 2 1 4 4 C 1.46902 * 111.00060 * 300.56003 * 3 2 1 5 5 C 1.50706 * 109.46999 * 293.95561 * 4 3 2 6 6 H 1.07999 * 119.99814 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99701 * 179.97438 * 5 4 3 8 8 N 1.31522 * 120.00329 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99752 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47043 * 90.00555 * 9 7 5 11 11 H 1.48501 * 109.47121 * 210.00040 * 9 7 5 12 12 H 1.48493 * 109.47305 * 330.00272 * 9 7 5 13 13 C 1.46895 * 111.00254 * 64.51461 * 3 2 1 14 14 C 1.50701 * 109.47290 * 68.16542 * 13 3 2 15 15 C 1.38150 * 120.03175 * 254.35103 * 14 13 3 16 16 C 1.38250 * 120.06399 * 179.97438 * 15 14 13 17 17 C 1.38300 * 120.13832 * 0.02562 * 16 15 14 18 18 C 1.38099 * 120.06288 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.03457 * 74.06830 * 14 13 3 20 20 N 1.40201 * 120.06804 * 0.02784 * 19 14 13 21 21 C 1.34719 * 126.84284 * 179.97438 * 20 19 14 22 22 N 1.30855 * 108.03356 * 180.02562 * 21 20 19 23 23 C 1.33254 * 109.84215 * 0.02562 * 22 21 20 24 24 N 1.30758 * 108.99970 * 359.71320 * 23 22 21 25 25 H 1.09004 * 109.47202 * 302.28340 * 1 2 3 26 26 H 1.09003 * 109.46738 * 62.27713 * 1 2 3 27 27 H 1.08994 * 109.47715 * 182.27983 * 1 2 3 28 28 H 1.09002 * 109.47006 * 239.99532 * 2 1 3 29 29 H 1.09010 * 109.46781 * 119.99619 * 2 1 3 30 30 H 1.08999 * 109.46813 * 53.95187 * 4 3 2 31 31 H 1.09000 * 109.47297 * 173.95445 * 4 3 2 32 32 H 0.97000 * 119.99694 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47404 * 188.15999 * 13 3 2 34 34 H 1.08997 * 109.46993 * 308.16332 * 13 3 2 35 35 H 1.08002 * 119.96420 * 359.95487 * 15 14 13 36 36 H 1.08002 * 119.93322 * 179.97438 * 16 15 14 37 37 H 1.08001 * 119.97037 * 179.97438 * 17 16 15 38 38 H 1.07997 * 120.03242 * 180.02562 * 18 17 16 39 39 H 1.08005 * 125.98557 * 0.02562 * 21 20 19 40 40 H 1.08001 * 125.50364 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5378 2.1137 -1.1809 5 6 2.1485 1.5174 -2.4230 6 1 2.8270 0.6811 -2.3430 7 6 1.8409 2.0397 -3.6613 8 7 1.0149 3.0586 -3.7587 9 14 2.5984 1.3011 -5.2009 10 1 1.7202 0.2193 -5.7146 11 1 2.7424 2.3555 -6.2366 12 1 3.9347 0.7412 -4.8754 13 6 1.6389 2.0780 1.2379 14 6 2.3898 1.4802 2.3997 15 6 1.7360 0.6555 3.2948 16 6 2.4244 0.1063 4.3606 17 6 3.7687 0.3808 4.5345 18 6 4.4276 1.2044 3.6431 19 6 3.7403 1.7529 2.5683 20 7 4.4078 2.5851 1.6587 21 6 5.7073 2.9392 1.6911 22 7 5.9389 3.7240 0.6699 23 6 4.8196 3.8939 -0.0329 24 7 3.8561 3.2119 0.5295 25 1 -0.3634 0.5489 0.8688 26 1 -0.3633 0.4781 -0.9097 27 1 -0.3634 -1.0268 0.0409 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 0.4519 2.0369 -1.2371 31 1 1.8243 3.1625 -1.1027 32 1 0.7988 3.4262 -4.6299 33 1 1.8850 3.1364 1.1523 34 1 0.5671 1.9663 1.4019 35 1 0.6861 0.4400 3.1619 36 1 1.9111 -0.5377 5.0592 37 1 4.3037 -0.0493 5.3683 38 1 5.4774 1.4181 3.7792 39 1 6.4311 2.6296 2.4305 40 1 4.7248 4.4937 -0.9260 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611253910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:50 Heat of formation + Delta-G solvation = 144.922363 kcal Electronic energy + Delta-G solvation = -23167.047839 eV Core-core repulsion = 19984.810554 eV Total energy + Delta-G solvation = -3182.237285 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.89682 -39.40570 -36.91367 -33.91297 -32.69974 -31.73083 -30.71666 -29.58099 -28.99799 -27.03125 -24.74417 -23.80097 -23.12339 -22.20378 -21.02833 -20.63106 -19.22499 -17.87606 -16.20539 -15.79461 -15.68245 -15.48787 -14.90414 -14.82919 -14.44737 -14.05407 -13.96098 -13.66608 -13.27655 -12.94212 -12.54215 -12.40460 -11.97224 -11.84783 -11.70586 -11.19014 -11.09307 -10.85834 -10.74217 -10.60539 -10.56234 -10.42042 -9.98072 -9.72392 -9.45419 -9.33492 -9.12241 -8.82796 -8.34782 -8.11274 -6.99549 -5.94797 -3.94006 0.92130 1.30858 2.35049 2.60334 3.34575 3.36816 3.41232 3.45980 3.78108 4.49109 4.49845 4.62669 4.79993 4.98343 5.05954 5.19051 5.28033 5.34654 5.41907 5.59963 5.64783 5.78258 5.90787 5.94746 6.02669 6.20196 6.26833 6.33421 6.42178 6.50343 6.58132 6.63508 6.77810 6.80213 6.95711 6.96665 7.32103 7.50867 7.53051 7.89627 8.24284 8.38754 8.44875 8.69120 9.13562 9.69004 11.15716 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.006249 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.734562 B = 4479.991966 C = 5618.462586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.059 3.941 3 N -0.510 5.510 4 C 0.199 3.801 5 C -0.494 4.494 6 H 0.057 0.943 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.090 3.910 14 C -0.058 4.058 15 C -0.096 4.096 16 C -0.128 4.128 17 C -0.104 4.104 18 C -0.141 4.141 19 C 0.171 3.829 20 N -0.325 5.325 21 C 0.236 3.764 22 N -0.539 5.539 23 C 0.188 3.812 24 N -0.237 5.237 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.046 0.954 30 H -0.008 1.008 31 H 0.035 0.965 32 H 0.259 0.741 33 H 0.094 0.906 34 H 0.030 0.970 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.211 0.789 40 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 -3.682 17.032 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.070 4.070 3 N -0.233 5.233 4 C 0.074 3.926 5 C -0.533 4.533 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.719 3.281 10 H -0.210 1.210 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.038 4.038 14 C -0.061 4.061 15 C -0.116 4.116 16 C -0.147 4.147 17 C -0.123 4.123 18 C -0.162 4.162 19 C 0.077 3.923 20 N -0.110 5.110 21 C -0.059 4.059 22 N -0.265 5.265 23 C -0.114 4.114 24 N -0.059 5.059 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.009 0.991 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.048 0.952 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.228 0.772 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.296 -3.398 16.438 17.327 hybrid contribution -0.389 -0.594 -0.820 1.085 sum 3.907 -3.992 15.618 16.587 Atomic orbital electron populations 1.22376 0.99602 1.00501 1.02088 1.21993 0.91949 0.92291 1.00785 1.62262 1.58834 1.00957 1.01237 1.19686 0.93189 0.94152 0.85531 1.21114 1.26225 1.15690 0.90292 0.92525 1.24920 0.95509 0.95226 0.98837 1.69959 1.35540 1.24395 1.24094 0.86615 0.79647 0.78718 0.83116 1.20955 1.21331 1.20016 1.21122 0.94648 0.99580 0.88448 1.19912 0.91933 0.97141 0.97132 1.21032 1.00237 0.96239 0.94060 1.21141 0.94618 1.00667 0.98296 1.20844 0.94671 0.97915 0.98885 1.20743 1.00072 1.00520 0.94850 1.17398 0.91788 0.93909 0.89188 1.47818 1.07922 1.35541 1.19674 1.25936 0.86309 0.95344 0.98346 1.70533 1.29054 1.20214 1.06734 1.26258 0.85854 0.98724 1.00519 1.78842 1.20562 1.10837 0.95694 0.93855 0.91182 0.93774 0.90623 0.93534 0.99061 0.94710 0.93149 0.88826 0.95244 0.85510 0.85805 0.85407 0.85496 0.77227 0.76737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.39 9.24 37.16 0.34 -3.05 16 2 C 0.06 1.15 5.71 -3.83 -0.02 1.13 16 3 N -0.51 -10.89 3.51 -237.52 -0.83 -11.73 16 4 C 0.20 5.09 4.13 -4.97 -0.02 5.07 16 5 C -0.49 -13.81 8.52 -34.44 -0.29 -14.11 16 6 H 0.06 1.62 7.10 -52.49 -0.37 1.25 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 9 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.09 1.67 3.97 -4.98 -0.02 1.65 16 14 C -0.06 -0.91 4.51 -104.44 -0.47 -1.38 16 15 C -0.10 -1.23 9.05 -39.61 -0.36 -1.59 16 16 C -0.13 -1.32 10.04 -39.55 -0.40 -1.72 16 17 C -0.10 -1.01 10.04 -39.61 -0.40 -1.41 16 18 C -0.14 -1.58 9.47 -39.40 -0.37 -1.95 16 19 C 0.17 2.55 6.68 -83.59 -0.56 2.00 16 20 N -0.32 -5.37 3.82 -11.80 -0.05 -5.42 16 21 C 0.24 3.40 11.98 -90.37 -1.08 2.31 16 22 N -0.54 -9.12 11.19 -15.74 -0.18 -9.29 16 23 C 0.19 3.46 13.03 -91.76 -1.20 2.26 16 24 N -0.24 -4.62 7.25 29.30 0.21 -4.41 16 25 H 0.04 0.72 6.25 -51.93 -0.32 0.40 16 26 H 0.07 1.49 6.39 -51.93 -0.33 1.15 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.65 6.87 -51.93 -0.36 1.30 16 29 H 0.05 0.84 6.75 -51.92 -0.35 0.49 16 30 H -0.01 -0.23 6.03 -51.93 -0.31 -0.54 16 31 H 0.03 0.96 7.43 -51.93 -0.39 0.58 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.09 1.89 6.03 -51.93 -0.31 1.58 16 34 H 0.03 0.53 5.84 -51.93 -0.30 0.23 16 35 H 0.13 1.48 8.00 -52.49 -0.42 1.06 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.13 1.06 6.81 -52.49 -0.36 0.70 16 39 H 0.21 1.94 7.10 -52.48 -0.37 1.56 16 40 H 0.22 3.60 8.06 -52.49 -0.42 3.17 16 LS Contribution 322.96 15.07 4.87 4.87 Total: -1.00 -32.36 322.96 -10.23 -42.60 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.03 Total: 1.58 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -4.94 Total: -9.29 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.11 Total: -56.73 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.36 -10.23 -42.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611253910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.518 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds