Wall clock time and date at job start Tue Mar 31 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46894 * 109.47347 * 2 1 4 4 C 1.46902 * 111.00060 * 300.56003 * 3 2 1 5 5 C 1.50706 * 109.46999 * 293.95561 * 4 3 2 6 6 H 1.07999 * 119.99814 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99701 * 179.97438 * 5 4 3 8 8 N 1.31522 * 120.00329 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99752 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47043 * 90.00555 * 9 7 5 11 11 H 1.48501 * 109.47121 * 210.00040 * 9 7 5 12 12 H 1.48493 * 109.47305 * 330.00272 * 9 7 5 13 13 C 1.46895 * 111.00254 * 64.51461 * 3 2 1 14 14 C 1.50701 * 109.47290 * 68.16542 * 13 3 2 15 15 C 1.38150 * 120.03175 * 254.35103 * 14 13 3 16 16 C 1.38250 * 120.06399 * 179.97438 * 15 14 13 17 17 C 1.38300 * 120.13832 * 0.02562 * 16 15 14 18 18 C 1.38099 * 120.06288 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.03457 * 74.06830 * 14 13 3 20 20 N 1.40201 * 120.06804 * 0.02784 * 19 14 13 21 21 C 1.34719 * 126.84284 * 179.97438 * 20 19 14 22 22 N 1.30855 * 108.03356 * 180.02562 * 21 20 19 23 23 C 1.33254 * 109.84215 * 0.02562 * 22 21 20 24 24 N 1.30758 * 108.99970 * 359.71320 * 23 22 21 25 25 H 1.09004 * 109.47202 * 302.28340 * 1 2 3 26 26 H 1.09003 * 109.46738 * 62.27713 * 1 2 3 27 27 H 1.08994 * 109.47715 * 182.27983 * 1 2 3 28 28 H 1.09002 * 109.47006 * 239.99532 * 2 1 3 29 29 H 1.09010 * 109.46781 * 119.99619 * 2 1 3 30 30 H 1.08999 * 109.46813 * 53.95187 * 4 3 2 31 31 H 1.09000 * 109.47297 * 173.95445 * 4 3 2 32 32 H 0.97000 * 119.99694 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47404 * 188.15999 * 13 3 2 34 34 H 1.08997 * 109.46993 * 308.16332 * 13 3 2 35 35 H 1.08002 * 119.96420 * 359.95487 * 15 14 13 36 36 H 1.08002 * 119.93322 * 179.97438 * 16 15 14 37 37 H 1.08001 * 119.97037 * 179.97438 * 17 16 15 38 38 H 1.07997 * 120.03242 * 180.02562 * 18 17 16 39 39 H 1.08005 * 125.98557 * 0.02562 * 21 20 19 40 40 H 1.08001 * 125.50364 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5378 2.1137 -1.1809 5 6 2.1485 1.5174 -2.4230 6 1 2.8270 0.6811 -2.3430 7 6 1.8409 2.0397 -3.6613 8 7 1.0149 3.0586 -3.7587 9 14 2.5984 1.3011 -5.2009 10 1 1.7202 0.2193 -5.7146 11 1 2.7424 2.3555 -6.2366 12 1 3.9347 0.7412 -4.8754 13 6 1.6389 2.0780 1.2379 14 6 2.3898 1.4802 2.3997 15 6 1.7360 0.6555 3.2948 16 6 2.4244 0.1063 4.3606 17 6 3.7687 0.3808 4.5345 18 6 4.4276 1.2044 3.6431 19 6 3.7403 1.7529 2.5683 20 7 4.4078 2.5851 1.6587 21 6 5.7073 2.9392 1.6911 22 7 5.9389 3.7240 0.6699 23 6 4.8196 3.8939 -0.0329 24 7 3.8561 3.2119 0.5295 25 1 -0.3634 0.5489 0.8688 26 1 -0.3633 0.4781 -0.9097 27 1 -0.3634 -1.0268 0.0409 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 0.4519 2.0369 -1.2371 31 1 1.8243 3.1625 -1.1027 32 1 0.7988 3.4262 -4.6299 33 1 1.8850 3.1364 1.1523 34 1 0.5671 1.9663 1.4019 35 1 0.6861 0.4400 3.1619 36 1 1.9111 -0.5377 5.0592 37 1 4.3037 -0.0493 5.3683 38 1 5.4774 1.4181 3.7792 39 1 6.4311 2.6296 2.4305 40 1 4.7248 4.4937 -0.9260 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611253910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:50 Heat of formation + Delta-G solvation = 127.447893 kcal Electronic energy + Delta-G solvation = -23167.805589 eV Core-core repulsion = 19984.810554 eV Total energy + Delta-G solvation = -3182.995035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.11837 -40.47785 -38.47593 -35.01263 -34.75444 -33.00082 -31.97031 -31.02627 -30.28216 -28.78585 -26.27477 -24.98701 -24.81218 -23.54764 -22.14305 -21.88282 -20.77095 -18.94563 -18.32269 -17.07495 -16.90210 -16.66914 -16.58292 -16.20479 -15.87567 -15.59564 -15.05605 -14.88552 -14.65910 -14.41604 -13.93632 -13.78891 -13.49543 -13.25132 -13.05289 -12.83275 -12.72366 -12.61561 -12.45221 -12.20351 -11.91381 -11.71673 -11.66148 -11.46344 -11.18147 -10.78950 -10.66907 -10.55045 -9.78654 -9.16415 -8.73478 -8.14875 -6.22329 -0.08303 0.39558 1.25406 1.36343 1.37744 1.48655 1.50083 2.06187 2.40159 2.83363 3.16903 3.45887 3.55494 3.62499 3.80817 4.05355 4.10013 4.25225 4.27139 4.36469 4.47262 4.54960 4.61998 4.69217 4.71979 4.85781 4.95741 5.04235 5.11846 5.25216 5.28067 5.44869 5.47852 5.50968 5.56450 5.59083 5.61182 5.71615 5.91036 6.15867 6.28342 6.53793 6.79790 6.94443 7.18619 7.45648 8.95120 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.006249 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.734562 B = 4479.991966 C = 5618.462586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.063 3.937 3 N -0.513 5.513 4 C 0.223 3.777 5 C -0.504 4.504 6 H 0.046 0.954 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.957 3.043 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.100 3.900 14 C -0.088 4.088 15 C -0.104 4.104 16 C -0.118 4.118 17 C -0.091 4.091 18 C -0.133 4.133 19 C 0.138 3.862 20 N -0.329 5.329 21 C 0.247 3.753 22 N -0.560 5.560 23 C 0.172 3.828 24 N -0.281 5.281 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.071 0.929 30 H -0.036 1.036 31 H 0.004 0.996 32 H 0.261 0.739 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.132 0.868 36 H 0.158 0.842 37 H 0.171 0.829 38 H 0.161 0.839 39 H 0.265 0.735 40 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.766 -6.178 19.990 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.066 4.066 3 N -0.236 5.236 4 C 0.097 3.903 5 C -0.542 4.542 6 H 0.065 0.935 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.198 1.198 13 C -0.028 4.028 14 C -0.090 4.090 15 C -0.123 4.123 16 C -0.136 4.136 17 C -0.109 4.109 18 C -0.153 4.153 19 C 0.045 3.955 20 N -0.113 5.113 21 C -0.047 4.047 22 N -0.287 5.287 23 C -0.130 4.130 24 N -0.105 5.105 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.090 0.910 30 H -0.018 1.018 31 H 0.022 0.978 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.150 0.850 36 H 0.176 0.824 37 H 0.188 0.812 38 H 0.178 0.822 39 H 0.280 0.720 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 5.786 -5.915 19.429 21.118 hybrid contribution -0.849 0.126 -1.536 1.759 sum 4.938 -5.789 17.894 19.444 Atomic orbital electron populations 1.22233 0.98393 1.02002 1.00721 1.21942 0.92918 0.91179 1.00547 1.62110 1.58962 1.01484 1.01007 1.19208 0.91145 0.92877 0.87100 1.21310 1.25960 1.15360 0.91590 0.93545 1.25722 0.95891 0.95566 1.01973 1.70083 1.36736 1.25607 1.24918 0.85572 0.78770 0.78126 0.79243 1.19973 1.20656 1.19814 1.20936 0.95032 0.98326 0.88542 1.19711 0.92644 0.99538 0.97136 1.21166 1.00729 0.95968 0.94447 1.21562 0.95085 0.99637 0.97309 1.21394 0.94464 0.96094 0.98952 1.21187 1.01598 0.99370 0.93155 1.17854 0.92004 0.95156 0.90472 1.47903 1.08648 1.35608 1.19157 1.26910 0.86244 0.93469 0.98057 1.70506 1.28678 1.21689 1.07820 1.26325 0.86574 0.99158 1.00983 1.78761 1.21993 1.12160 0.97568 0.92444 0.95004 0.90959 0.93295 0.91044 1.01809 0.97774 0.92975 0.91481 0.95456 0.84991 0.82429 0.81193 0.82181 0.71987 0.77054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.42 9.24 71.98 0.67 -5.76 16 2 C 0.06 2.51 5.71 86.30 0.49 3.00 16 3 N -0.51 -22.96 3.51 -905.36 -3.18 -26.14 16 4 C 0.22 12.20 4.13 85.56 0.35 12.56 16 5 C -0.50 -29.52 8.52 25.60 0.22 -29.30 16 6 H 0.05 2.76 7.10 -2.91 -0.02 2.74 16 7 C 0.01 0.35 5.46 84.65 0.46 0.81 16 8 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 9 Si 0.96 46.29 29.54 68.60 2.03 48.32 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 12 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 13 C 0.10 3.86 3.97 85.56 0.34 4.20 16 14 C -0.09 -2.67 4.51 -19.75 -0.09 -2.76 16 15 C -0.10 -2.38 9.05 22.25 0.20 -2.18 16 16 C -0.12 -1.84 10.04 22.29 0.22 -1.61 16 17 C -0.09 -1.22 10.04 22.25 0.22 -1.00 16 18 C -0.13 -2.37 9.47 22.39 0.21 -2.16 16 19 C 0.14 3.89 6.68 38.09 0.25 4.14 16 20 N -0.33 -10.78 3.82 -191.26 -0.73 -11.51 16 21 C 0.25 6.74 11.98 180.26 2.16 8.90 16 22 N -0.56 -19.09 11.19 -203.72 -2.28 -21.37 16 23 C 0.17 6.71 13.03 180.75 2.35 9.06 16 24 N -0.28 -11.61 7.25 -61.21 -0.44 -12.05 16 25 H 0.06 1.92 6.25 -2.39 -0.01 1.90 16 26 H 0.03 1.40 6.39 -2.39 -0.02 1.38 16 27 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.05 2.20 6.87 -2.39 -0.02 2.18 16 29 H 0.07 2.51 6.75 -2.38 -0.02 2.49 16 30 H -0.04 -2.10 6.03 -2.39 -0.01 -2.12 16 31 H 0.00 0.25 7.43 -2.39 -0.02 0.23 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.07 2.94 6.03 -2.38 -0.01 2.92 16 34 H 0.03 1.04 5.84 -2.39 -0.01 1.02 16 35 H 0.13 2.78 8.00 -2.91 -0.02 2.76 16 36 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 38 H 0.16 1.71 6.81 -2.91 -0.02 1.69 16 39 H 0.26 3.72 7.10 -2.91 -0.02 3.70 16 40 H 0.21 7.89 8.06 -2.91 -0.02 7.86 16 Total: -1.00 -75.95 322.96 4.80 -71.15 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.05 Total: 10.84 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 8.07 Total: -2.08 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -6.35 Total: -128.22 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -75.95 4.80 -71.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611253910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.600 kcal (2) G-P(sol) polarization free energy of solvation -75.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds