Wall clock time and date at job start Tue Mar 31 2020 05:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99679 * 2 1 3 5 5 C 1.50702 * 109.47522 * 295.00468 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52999 * 109.47239 * 239.99874 * 2 1 3 14 14 N 1.46497 * 109.47479 * 65.00221 * 13 2 1 15 15 C 1.39765 * 120.00488 * 179.97438 * 14 13 2 16 16 C 1.38920 * 120.00781 * 359.72004 * 15 14 13 17 17 C 1.38031 * 119.99140 * 179.74625 * 16 15 14 18 18 C 1.38843 * 120.00572 * 0.53145 * 17 16 15 19 19 N 1.40351 * 119.98688 * 179.72325 * 18 17 16 20 20 C 1.36091 * 125.94414 * 0.02562 * 19 18 17 21 21 C 1.35396 * 106.05014 * 179.97438 * 20 19 18 22 22 N 1.33757 * 106.53337 * 359.97438 * 21 20 19 23 23 N 1.28604 * 109.06319 * 359.77118 * 22 21 20 24 24 C 1.38832 * 120.01793 * 359.74356 * 18 17 16 25 25 C 1.38027 * 120.01562 * 359.97438 * 24 18 17 26 26 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47667 * 300.00120 * 1 2 3 28 28 H 1.09008 * 109.47037 * 60.00507 * 1 2 3 29 29 H 1.09000 * 109.47527 * 175.00066 * 4 2 1 30 30 H 1.09001 * 109.47054 * 55.00157 * 4 2 1 31 31 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 32 32 H 1.09004 * 109.46992 * 185.00306 * 13 2 1 33 33 H 1.08999 * 109.47129 * 304.99562 * 13 2 1 34 34 H 0.97005 * 119.99255 * 359.97438 * 14 13 2 35 35 H 1.08004 * 120.00311 * 0.02562 * 16 15 14 36 36 H 1.07994 * 119.99825 * 180.30150 * 17 16 15 37 37 H 1.07999 * 126.96873 * 359.93793 * 20 19 18 38 38 H 1.07997 * 126.72737 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.99241 * 179.97438 * 24 18 17 40 40 H 1.07994 * 120.00729 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 1 1.0804 0.9746 2.3756 7 6 1.9930 -0.4017 3.7283 8 7 1.6498 0.2804 4.7991 9 14 2.9635 -1.9882 3.9029 10 1 2.0242 -3.1318 4.0269 11 1 3.8201 -2.1789 2.7051 12 1 3.8174 -1.9153 5.1156 13 6 2.0400 -0.7213 -1.2492 14 7 1.6525 0.0353 -2.4424 15 6 2.0093 -0.4298 -3.7112 16 6 2.7364 -1.6064 -3.8409 17 6 3.0840 -2.0681 -5.0943 18 6 2.7166 -1.3509 -6.2250 19 7 3.0753 -1.8176 -7.4991 20 6 3.7782 -2.9521 -7.7655 21 6 3.8946 -3.0126 -9.1131 22 7 3.2694 -1.9340 -9.5979 23 7 2.7913 -1.2503 -8.6192 24 6 1.9949 -0.1720 -6.0955 25 6 1.6418 0.2874 -4.8428 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 3.1262 -0.7995 1.2057 30 1 1.6053 -1.7197 1.2952 31 1 1.9007 -0.0402 5.6795 32 1 3.1263 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 1.1483 0.8590 -2.3517 35 1 3.0257 -2.1622 -2.9612 36 1 3.6451 -2.9853 -5.1955 37 1 4.1651 -3.6601 -7.0476 38 1 4.3942 -3.7809 -9.6844 39 1 1.7097 0.3858 -6.9753 40 1 1.0808 1.2047 -4.7422 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619242727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:00 Heat of formation + Delta-G solvation = 119.888651 kcal Electronic energy + Delta-G solvation = -20997.541518 eV Core-core repulsion = 17814.218690 eV Total energy + Delta-G solvation = -3183.322828 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.53638 -39.82664 -37.22598 -35.10843 -33.33694 -32.06834 -31.84721 -30.85868 -28.95983 -27.49834 -26.13861 -23.98941 -23.74777 -22.51675 -21.79119 -20.94725 -19.48190 -18.82300 -17.34816 -16.95510 -16.59690 -15.91844 -15.50449 -15.02281 -14.76065 -14.39610 -14.20816 -13.95412 -13.71713 -13.58478 -13.28161 -12.74461 -12.63667 -12.42790 -12.02698 -11.91160 -11.44175 -11.31175 -11.20625 -11.16037 -10.92077 -10.68977 -10.13381 -9.89114 -9.80475 -9.71800 -9.64233 -9.34504 -9.24762 -8.64218 -7.49744 -6.14144 -4.12908 0.59629 1.06717 1.89599 2.15792 2.35811 3.22070 3.30511 3.31558 3.33797 3.54115 4.18328 4.33635 4.35209 4.58553 4.72380 4.89190 4.99453 5.01631 5.14261 5.18349 5.26092 5.37986 5.49299 5.59287 5.65384 5.71295 5.86816 5.91240 6.00286 6.09585 6.15830 6.16474 6.30993 6.52407 6.66952 6.69717 6.87174 7.06480 7.14088 7.23930 7.58063 7.67090 8.28418 8.41867 8.89645 9.47545 10.98939 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.036840 B = 0.002603 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.861021 B =10753.058862 C =11392.907464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.074 0.926 7 C 0.066 3.934 8 N -0.901 5.901 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.266 1.266 12 H -0.288 1.288 13 C 0.118 3.882 14 N -0.729 5.729 15 C 0.241 3.759 16 C -0.184 4.184 17 C -0.059 4.059 18 C 0.032 3.968 19 N -0.220 5.220 20 C -0.057 4.057 21 C -0.050 4.050 22 N -0.275 5.275 23 N -0.088 5.088 24 C -0.043 4.043 25 C -0.187 4.187 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.017 0.983 30 H 0.014 0.986 31 H 0.264 0.736 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.404 0.596 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.191 0.809 38 H 0.191 0.809 39 H 0.138 0.862 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.986 -5.889 -20.914 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.540 5.540 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.190 1.190 12 H -0.214 1.214 13 C -0.006 4.006 14 N -0.354 5.354 15 C 0.132 3.868 16 C -0.207 4.207 17 C -0.080 4.080 18 C -0.061 4.061 19 N -0.007 5.007 20 C -0.206 4.206 21 C -0.207 4.207 22 N -0.140 5.140 23 N -0.067 5.067 24 C -0.064 4.064 25 C -0.210 4.210 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.239 0.761 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.208 0.792 38 H 0.208 0.792 39 H 0.156 0.844 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.371 -4.803 -21.236 21.901 hybrid contribution 0.897 -1.546 0.985 2.042 sum 3.269 -6.350 -20.251 21.473 Atomic orbital electron populations 1.21751 0.95340 1.01283 1.00875 1.21257 0.96088 0.99990 0.93310 0.91194 1.19567 0.96077 0.95881 0.92842 1.21055 1.35911 1.09688 0.89002 0.90814 1.25029 0.95544 0.97004 0.95928 1.69903 1.46794 1.39189 0.98129 0.86800 0.80613 0.84180 0.77797 1.20306 1.19045 1.21371 1.21783 0.99367 0.95394 0.84019 1.45172 1.59788 1.27914 1.02542 1.18091 0.90846 0.91977 0.85885 1.20540 1.05033 0.97911 0.97230 1.20570 0.98338 0.98762 0.90322 1.17347 1.09438 0.99410 0.79861 1.44685 1.33688 1.15840 1.06478 1.23781 1.04243 0.93653 0.98921 1.23590 1.05072 0.99896 0.92124 1.75078 1.11693 1.05043 1.22233 1.78312 1.20612 1.21160 0.86603 1.20620 0.94467 0.93144 0.98182 1.20512 1.07590 1.02616 0.90299 0.93434 0.91078 0.94826 0.96440 0.96767 0.92659 0.92092 0.92129 0.76074 0.84505 0.85145 0.79238 0.79162 0.84377 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.88 37.16 0.33 -1.83 16 2 C -0.09 -1.45 2.37 -90.62 -0.22 -1.67 16 3 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.01 -0.12 3.52 -27.88 -0.10 -0.22 16 5 C -0.52 -13.65 8.96 -34.44 -0.31 -13.96 16 6 H 0.07 2.09 7.30 -52.49 -0.38 1.71 16 7 C 0.07 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.90 -26.71 13.96 55.43 0.77 -25.94 16 9 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.12 1.55 4.30 -4.04 -0.02 1.54 16 14 N -0.73 -8.20 5.46 -58.60 -0.32 -8.52 16 15 C 0.24 2.59 6.65 -83.74 -0.56 2.03 16 16 C -0.18 -1.86 9.30 -39.40 -0.37 -2.23 16 17 C -0.06 -0.55 9.45 -39.43 -0.37 -0.92 16 18 C 0.03 0.35 6.68 -83.51 -0.56 -0.21 16 19 N -0.22 -2.54 3.56 -10.44 -0.04 -2.58 16 20 C -0.06 -0.50 10.92 -16.68 -0.18 -0.69 16 21 C -0.05 -0.47 12.05 -17.73 -0.21 -0.69 16 22 N -0.28 -3.64 12.39 30.24 0.37 -3.27 16 23 N -0.09 -1.20 12.41 60.35 0.75 -0.46 16 24 C -0.04 -0.46 9.61 -39.44 -0.38 -0.84 16 25 C -0.19 -1.85 9.89 -39.41 -0.39 -2.24 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.31 6.95 -51.93 -0.36 0.95 16 28 H 0.03 0.44 7.18 -51.92 -0.37 0.06 16 29 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 30 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.06 0.80 7.94 -51.93 -0.41 0.39 16 33 H 0.06 0.78 7.96 -51.93 -0.41 0.37 16 34 H 0.40 4.17 7.67 -40.82 -0.31 3.85 16 35 H 0.14 1.30 6.73 -52.48 -0.35 0.94 16 36 H 0.13 0.87 6.76 -52.49 -0.35 0.51 16 37 H 0.19 0.93 7.10 -52.49 -0.37 0.56 16 38 H 0.19 1.07 8.06 -52.49 -0.42 0.64 16 39 H 0.14 1.40 7.69 -52.48 -0.40 0.99 16 40 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -31.34 332.80 -6.90 -38.25 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.36 Total: 1.74 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -3.43 Total: -20.17 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 1.54 Total: -40.76 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.34 -6.90 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619242727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.136 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds