Wall clock time and date at job start Tue Mar 31 2020 05:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99679 * 2 1 3 5 5 C 1.50702 * 109.47522 * 295.00468 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52999 * 109.47239 * 239.99874 * 2 1 3 14 14 N 1.46497 * 109.47479 * 65.00221 * 13 2 1 15 15 C 1.39765 * 120.00488 * 179.97438 * 14 13 2 16 16 C 1.38920 * 120.00781 * 359.72004 * 15 14 13 17 17 C 1.38031 * 119.99140 * 179.74625 * 16 15 14 18 18 C 1.38843 * 120.00572 * 0.53145 * 17 16 15 19 19 N 1.40351 * 119.98688 * 179.72325 * 18 17 16 20 20 C 1.36091 * 125.94414 * 0.02562 * 19 18 17 21 21 C 1.35396 * 106.05014 * 179.97438 * 20 19 18 22 22 N 1.33757 * 106.53337 * 359.97438 * 21 20 19 23 23 N 1.28604 * 109.06319 * 359.77118 * 22 21 20 24 24 C 1.38832 * 120.01793 * 359.74356 * 18 17 16 25 25 C 1.38027 * 120.01562 * 359.97438 * 24 18 17 26 26 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47667 * 300.00120 * 1 2 3 28 28 H 1.09008 * 109.47037 * 60.00507 * 1 2 3 29 29 H 1.09000 * 109.47527 * 175.00066 * 4 2 1 30 30 H 1.09001 * 109.47054 * 55.00157 * 4 2 1 31 31 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 32 32 H 1.09004 * 109.46992 * 185.00306 * 13 2 1 33 33 H 1.08999 * 109.47129 * 304.99562 * 13 2 1 34 34 H 0.97005 * 119.99255 * 359.97438 * 14 13 2 35 35 H 1.08004 * 120.00311 * 0.02562 * 16 15 14 36 36 H 1.07994 * 119.99825 * 180.30150 * 17 16 15 37 37 H 1.07999 * 126.96873 * 359.93793 * 20 19 18 38 38 H 1.07997 * 126.72737 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.99241 * 179.97438 * 24 18 17 40 40 H 1.07994 * 120.00729 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 1 1.0804 0.9746 2.3756 7 6 1.9930 -0.4017 3.7283 8 7 1.6498 0.2804 4.7991 9 14 2.9635 -1.9882 3.9029 10 1 2.0242 -3.1318 4.0269 11 1 3.8201 -2.1789 2.7051 12 1 3.8174 -1.9153 5.1156 13 6 2.0400 -0.7213 -1.2492 14 7 1.6525 0.0353 -2.4424 15 6 2.0093 -0.4298 -3.7112 16 6 2.7364 -1.6064 -3.8409 17 6 3.0840 -2.0681 -5.0943 18 6 2.7166 -1.3509 -6.2250 19 7 3.0753 -1.8176 -7.4991 20 6 3.7782 -2.9521 -7.7655 21 6 3.8946 -3.0126 -9.1131 22 7 3.2694 -1.9340 -9.5979 23 7 2.7913 -1.2503 -8.6192 24 6 1.9949 -0.1720 -6.0955 25 6 1.6418 0.2874 -4.8428 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 3.1262 -0.7995 1.2057 30 1 1.6053 -1.7197 1.2952 31 1 1.9007 -0.0402 5.6795 32 1 3.1263 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 1.1483 0.8590 -2.3517 35 1 3.0257 -2.1622 -2.9612 36 1 3.6451 -2.9853 -5.1955 37 1 4.1651 -3.6601 -7.0476 38 1 4.3942 -3.7809 -9.6844 39 1 1.7097 0.3858 -6.9753 40 1 1.0808 1.2047 -4.7422 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619242727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:00 Heat of formation + Delta-G solvation = 100.512769 kcal Electronic energy + Delta-G solvation = -20998.381719 eV Core-core repulsion = 17814.218690 eV Total energy + Delta-G solvation = -3184.163030 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.31366 -40.61292 -38.32709 -36.22541 -34.70498 -33.60962 -32.59316 -31.59931 -30.14407 -28.93280 -27.22767 -24.95501 -24.70556 -23.79660 -22.61863 -21.81562 -20.80806 -19.56545 -18.97018 -18.15449 -17.39878 -16.90893 -16.30399 -16.18387 -15.98566 -15.51968 -15.18265 -14.89372 -14.77423 -14.62913 -14.40546 -14.09507 -13.69029 -13.65960 -13.37762 -12.84403 -12.79754 -12.71938 -12.31984 -12.14918 -12.03495 -11.90180 -11.71905 -11.56538 -11.33665 -11.10135 -10.72940 -10.61411 -10.39309 -10.08021 -8.31950 -8.25020 -6.28011 -0.16876 0.33524 1.14291 1.38832 1.40718 1.43524 1.51475 1.59807 2.39075 2.44565 2.78489 3.10961 3.51163 3.68519 3.87918 3.97394 4.08784 4.16520 4.23181 4.29234 4.32429 4.37053 4.50402 4.71805 4.76188 4.80226 4.88570 4.93859 4.99518 5.07295 5.22685 5.24513 5.25802 5.37903 5.44064 5.50426 5.55316 5.66510 5.71442 5.92038 6.27184 6.35364 6.75415 6.80561 7.35927 7.48578 8.91479 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.036840 B = 0.002603 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.861021 B =10753.058862 C =11392.907464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.082 4.082 3 H 0.059 0.941 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.035 0.965 7 C -0.002 4.002 8 N -0.955 5.955 9 Si 0.948 3.052 10 H -0.269 1.269 11 H -0.239 1.239 12 H -0.291 1.291 13 C 0.133 3.867 14 N -0.730 5.730 15 C 0.231 3.769 16 C -0.188 4.188 17 C -0.051 4.051 18 C 0.019 3.981 19 N -0.226 5.226 20 C -0.048 4.048 21 C -0.055 4.055 22 N -0.311 5.311 23 N -0.130 5.130 24 C -0.055 4.055 25 C -0.185 4.185 26 H 0.051 0.949 27 H 0.034 0.966 28 H 0.063 0.937 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.263 0.737 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.407 0.593 35 H 0.148 0.852 36 H 0.162 0.838 37 H 0.233 0.767 38 H 0.225 0.775 39 H 0.133 0.867 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.418 -8.551 -22.329 24.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.100 4.100 3 H 0.077 0.923 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.053 0.947 7 C -0.198 4.198 8 N -0.597 5.597 9 Si 0.771 3.229 10 H -0.194 1.194 11 H -0.162 1.162 12 H -0.218 1.218 13 C 0.009 3.991 14 N -0.356 5.356 15 C 0.123 3.877 16 C -0.212 4.212 17 C -0.072 4.072 18 C -0.074 4.074 19 N -0.014 5.014 20 C -0.197 4.197 21 C -0.212 4.212 22 N -0.175 5.175 23 N -0.108 5.108 24 C -0.076 4.076 25 C -0.208 4.208 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.243 0.757 35 H 0.166 0.834 36 H 0.179 0.821 37 H 0.249 0.751 38 H 0.242 0.758 39 H 0.151 0.849 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.794 -7.449 -22.705 24.195 hybrid contribution 0.424 -0.671 1.377 1.589 sum 4.217 -8.120 -21.328 23.208 Atomic orbital electron populations 1.21676 0.95036 1.01439 1.00590 1.21072 0.96300 0.99327 0.93347 0.92272 1.19533 0.96437 0.95859 0.92569 1.21447 1.34346 1.08673 0.91236 0.94718 1.26035 0.97084 1.01048 0.95608 1.70078 1.49123 1.41667 0.98787 0.85697 0.79324 0.79396 0.78455 1.19426 1.16235 1.21777 1.21465 0.99534 0.95251 0.82874 1.44972 1.60389 1.28080 1.02199 1.18205 0.91403 0.92544 0.85542 1.20751 1.04746 0.97712 0.97958 1.20840 0.97680 0.99396 0.89244 1.17625 1.09750 0.99790 0.80194 1.44856 1.33803 1.16498 1.06204 1.24541 1.02533 0.92985 0.99635 1.24281 1.04448 0.99546 0.92956 1.75023 1.12881 1.06618 1.23002 1.78280 1.22572 1.22536 0.87423 1.20705 0.94992 0.93584 0.98323 1.20628 1.07338 1.03001 0.89850 0.92983 0.94683 0.91804 0.95852 0.95881 0.92784 0.91564 0.91139 0.75683 0.83450 0.82069 0.75078 0.75815 0.84870 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 8.88 71.98 0.64 -3.39 16 2 C -0.08 -2.59 2.37 -10.80 -0.03 -2.62 16 3 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 4 C -0.01 -0.25 3.52 29.85 0.10 -0.14 16 5 C -0.52 -27.78 8.96 25.60 0.23 -27.56 16 6 H 0.03 2.06 7.30 -2.91 -0.02 2.04 16 7 C 0.00 -0.10 5.47 84.65 0.46 0.37 16 8 N -0.96 -58.41 13.96 21.45 0.30 -58.11 16 9 Si 0.95 41.85 27.47 68.60 1.88 43.73 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.24 -9.45 6.54 99.48 0.65 -8.80 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 13 C 0.13 3.10 4.30 86.38 0.37 3.47 16 14 N -0.73 -14.51 5.46 -339.33 -1.85 -16.36 16 15 C 0.23 4.37 6.65 38.20 0.25 4.62 16 16 C -0.19 -3.18 9.30 22.38 0.21 -2.97 16 17 C -0.05 -0.76 9.45 22.37 0.21 -0.55 16 18 C 0.02 0.38 6.68 38.06 0.25 0.63 16 19 N -0.23 -4.84 3.56 -186.94 -0.67 -5.51 16 20 C -0.05 -0.70 10.92 83.38 0.91 0.21 16 21 C -0.05 -0.92 12.05 83.74 1.01 0.09 16 22 N -0.31 -8.04 12.39 -58.24 -0.72 -8.76 16 23 N -0.13 -3.52 12.41 37.02 0.46 -3.06 16 24 C -0.06 -1.11 9.61 22.36 0.21 -0.89 16 25 C -0.19 -3.35 9.89 22.38 0.22 -3.13 16 26 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.03 1.32 6.95 -2.39 -0.02 1.30 16 28 H 0.06 1.57 7.18 -2.38 -0.02 1.55 16 29 H 0.02 0.93 7.20 -2.39 -0.02 0.92 16 30 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 31 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.07 1.50 7.94 -2.38 -0.02 1.48 16 33 H 0.07 1.54 7.96 -2.39 -0.02 1.52 16 34 H 0.41 7.49 7.67 -92.70 -0.71 6.78 16 35 H 0.15 2.17 6.73 -2.91 -0.02 2.15 16 36 H 0.16 1.33 6.76 -2.91 -0.02 1.31 16 37 H 0.23 1.07 7.10 -2.91 -0.02 1.05 16 38 H 0.23 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.13 2.73 7.69 -2.91 -0.02 2.71 16 40 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -71.03 332.80 4.75 -66.27 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.29 Total: 13.66 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 5.07 Total: -31.87 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -2.48 Total: -91.81 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.88 Total: 43.73 kcal Total: -71.03 4.75 -66.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619242727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.787 kcal (2) G-P(sol) polarization free energy of solvation -71.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds