Wall clock time and date at job start Tue Mar 31 2020 05:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46757 * 2 1 4 4 C 1.50696 * 109.46853 * 119.99910 * 2 1 3 5 5 N 1.28014 * 120.00165 * 359.97438 * 4 2 1 6 6 N 1.40105 * 120.00028 * 180.02562 * 5 4 2 7 7 C 1.37979 * 120.00073 * 180.02562 * 6 5 4 8 8 N 1.31001 * 125.07188 * 0.02562 * 7 6 5 9 9 C 1.35839 * 109.62289 * 179.97438 * 8 7 6 10 10 C 1.39739 * 133.38915 * 180.02562 * 9 8 7 11 11 C 1.37677 * 119.77656 * 179.97438 * 10 9 8 12 12 C 1.38715 * 120.50233 * 0.02562 * 11 10 9 13 13 C 1.37951 * 120.43645 * 359.97438 * 12 11 10 14 14 C 1.38675 * 119.85194 * 0.04722 * 13 12 11 15 15 N 1.36609 * 125.07433 * 179.72000 * 7 6 5 16 16 H 0.96999 * 126.37632 * 359.97438 * 15 7 6 17 17 C 1.53001 * 109.47206 * 239.99944 * 2 1 3 18 18 C 1.50696 * 109.47055 * 59.99854 * 17 2 1 19 19 H 1.08004 * 120.00489 * 0.02562 * 18 17 2 20 20 C 1.37882 * 119.99748 * 179.97438 * 18 17 2 21 21 N 1.31507 * 120.00173 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99735 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47233 * 60.00465 * 22 20 18 24 24 H 1.48500 * 109.46997 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47364 * 300.00392 * 22 20 18 26 26 H 1.08996 * 109.47285 * 300.00501 * 1 2 3 27 27 H 1.09002 * 109.46559 * 60.00106 * 1 2 3 28 28 H 1.09002 * 109.46920 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46541 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47232 * 299.99798 * 3 2 1 31 31 H 1.09000 * 109.47381 * 60.00162 * 3 2 1 32 32 H 1.07999 * 119.99822 * 180.02562 * 4 2 1 33 33 H 0.96999 * 119.99953 * 0.02562 * 6 5 4 34 34 H 1.07996 * 120.11107 * 0.02562 * 10 9 8 35 35 H 1.08007 * 119.74931 * 179.97438 * 11 10 9 36 36 H 1.08000 * 119.78163 * 180.02562 * 12 11 10 37 37 H 1.08004 * 120.07568 * 179.97438 * 13 12 11 38 38 H 1.08995 * 109.46867 * 180.02562 * 17 2 1 39 39 H 1.08998 * 109.46710 * 300.00283 * 17 2 1 40 40 H 0.96994 * 120.00363 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.2004 -1.1964 2.0734 6 7 1.6674 -1.8564 3.2176 7 6 0.7708 -2.3808 4.1258 8 7 -0.5333 -2.3193 4.0175 9 6 -1.1091 -2.9347 5.0828 10 6 -2.4357 -3.1553 5.4623 11 6 -2.7095 -3.8303 6.6306 12 6 -1.6781 -4.2928 7.4347 13 6 -0.3631 -4.0832 7.0743 14 6 -0.0687 -3.4049 5.9012 15 7 1.1104 -3.0466 5.2693 16 1 2.0099 -3.2320 5.5815 17 6 2.0401 -0.7213 -1.2492 18 6 1.5378 -0.0109 -2.4797 19 1 0.9171 0.8675 -2.3807 20 6 1.8713 -0.4817 -3.7320 21 7 2.6274 -1.5509 -3.8526 22 14 1.2492 0.3993 -5.2572 23 1 1.7443 1.7993 -5.2567 24 1 1.7441 -0.3009 -6.4696 25 1 -0.2358 0.3994 -5.2577 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.0941 -0.8087 1.4016 33 1 2.6211 -1.9447 3.3713 34 1 -3.2436 -2.7983 4.8408 35 1 -3.7350 -4.0002 6.9237 36 1 -1.9061 -4.8213 8.3486 37 1 0.4353 -4.4455 7.7050 38 1 3.1301 -0.7216 -1.2490 39 1 1.6767 -1.7489 -1.2492 40 1 2.8624 -1.8819 -4.7335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755488638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:35 Heat of formation + Delta-G solvation = 109.426283 kcal Electronic energy + Delta-G solvation = -21223.494816 eV Core-core repulsion = 18039.718306 eV Total energy + Delta-G solvation = -3183.776511 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.99457 -38.13533 -37.27025 -35.53644 -33.10352 -32.57322 -31.19937 -29.91678 -28.22127 -27.03176 -26.35691 -24.15882 -22.70868 -22.37757 -21.96524 -20.79214 -18.76456 -18.02285 -17.16700 -16.74778 -16.27465 -15.98605 -15.55067 -14.66103 -14.45762 -14.28351 -13.90501 -13.64112 -13.46299 -12.88176 -12.72934 -12.06410 -12.04817 -11.69089 -11.53830 -11.33792 -10.96754 -10.91259 -10.83961 -10.71635 -10.56827 -10.25633 -10.08144 -9.77944 -9.63224 -9.56316 -9.00657 -8.96406 -8.35940 -8.33854 -7.44832 -6.00785 -4.01746 0.99409 1.45949 1.92566 2.40353 3.09521 3.28967 3.34312 3.39101 3.41569 3.90868 4.28908 4.46365 4.73924 4.97886 5.05301 5.16915 5.22385 5.35838 5.42470 5.50324 5.68390 5.86039 5.94866 5.96873 6.07269 6.29181 6.36753 6.42977 6.47772 6.55252 6.63323 6.67863 6.81883 6.87837 7.06066 7.11047 7.26198 7.48931 7.59926 7.71326 7.90236 7.97716 8.37833 8.51331 9.02264 9.61452 11.10832 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.031696 B = 0.002814 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.172277 B = 9946.949497 C =10197.965418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.009 4.009 3 C -0.123 4.123 4 C 0.099 3.901 5 N -0.219 5.219 6 N -0.568 5.568 7 C 0.568 3.432 8 N -0.509 5.509 9 C 0.081 3.919 10 C -0.079 4.079 11 C -0.123 4.123 12 C -0.122 4.122 13 C -0.105 4.105 14 C 0.037 3.963 15 N -0.625 5.625 16 H 0.418 0.582 17 C 0.039 3.961 18 C -0.510 4.510 19 H 0.062 0.938 20 C 0.057 3.943 21 N -0.897 5.897 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.276 1.276 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.101 0.899 33 H 0.388 0.612 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.202 -3.048 21.207 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.012 4.012 3 C -0.182 4.182 4 C -0.117 4.117 5 N -0.021 5.021 6 N -0.297 5.297 7 C 0.211 3.789 8 N -0.238 5.238 9 C -0.038 4.038 10 C -0.099 4.099 11 C -0.144 4.144 12 C -0.142 4.142 13 C -0.126 4.126 14 C -0.071 4.071 15 N -0.246 5.246 16 H 0.256 0.744 17 C 0.001 3.999 18 C -0.548 4.548 19 H 0.080 0.920 20 C -0.144 4.144 21 N -0.536 5.536 22 Si 0.718 3.282 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.202 1.202 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.118 0.882 33 H 0.227 0.773 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.664 -2.933 20.668 21.195 hybrid contribution 2.311 -0.230 -0.087 2.324 sum -1.353 -3.163 20.582 20.867 Atomic orbital electron populations 1.21610 0.93600 1.01942 1.00440 1.19793 0.96712 0.94522 0.90200 1.21728 1.00386 0.94767 1.01284 1.26714 0.96313 0.94119 0.94540 1.74694 1.26643 1.07460 0.93291 1.44259 1.04676 1.60231 1.20497 1.18754 0.87775 0.90308 0.82027 1.70928 1.01295 1.27667 1.23893 1.19053 0.93878 0.99130 0.91702 1.20253 0.93295 0.99508 0.96873 1.20838 0.99200 0.99621 0.94696 1.20743 0.91471 1.01770 1.00210 1.19826 0.97218 1.01202 0.94353 1.18593 0.85492 1.05231 0.97786 1.42740 1.08488 1.52502 1.20845 0.74416 1.19138 0.96218 0.95442 0.89069 1.21131 1.31271 1.12191 0.90249 0.91978 1.24996 0.95251 0.95056 0.99104 1.69943 1.36994 1.23069 1.23604 0.86680 0.79312 0.79713 0.82449 1.20246 1.21461 1.20181 0.94213 0.91790 0.92892 0.93227 0.90543 0.94562 0.88197 0.77283 0.85326 0.85594 0.85656 0.86431 0.96321 0.96232 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 7.45 37.16 0.28 -2.07 16 2 C -0.01 -0.18 0.75 -155.66 -0.12 -0.30 16 3 C -0.12 -2.14 8.20 37.16 0.30 -1.83 16 4 C 0.10 1.69 9.56 -13.87 -0.13 1.56 16 5 N -0.22 -3.88 9.94 32.67 0.32 -3.55 16 6 N -0.57 -8.27 6.39 30.18 0.19 -8.07 16 7 C 0.57 8.68 8.99 -319.80 -2.88 5.80 16 8 N -0.51 -9.14 11.13 -11.48 -0.13 -9.27 16 9 C 0.08 1.25 7.22 -84.69 -0.61 0.64 16 10 C -0.08 -1.02 10.10 -39.23 -0.40 -1.41 16 11 C -0.12 -1.23 10.01 -39.61 -0.40 -1.63 16 12 C -0.12 -1.12 10.03 -39.51 -0.40 -1.51 16 13 C -0.10 -1.05 10.06 -39.52 -0.40 -1.45 16 14 C 0.04 0.47 7.30 -83.85 -0.61 -0.14 16 15 N -0.63 -7.24 6.28 -11.14 -0.07 -7.31 16 16 H 0.42 3.14 8.96 -40.82 -0.37 2.77 16 17 C 0.04 0.95 4.02 -27.88 -0.11 0.84 16 18 C -0.51 -13.37 7.65 -34.44 -0.26 -13.63 16 19 H 0.06 1.56 5.68 -52.48 -0.30 1.27 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 22 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H 0.04 0.74 8.06 -51.93 -0.42 0.32 16 27 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 28 H 0.05 1.12 8.06 -51.93 -0.42 0.70 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.41 6.62 -51.93 -0.34 1.07 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 1.43 8.00 -52.49 -0.42 1.01 16 33 H 0.39 4.16 8.75 -182.59 -1.60 2.56 16 34 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 338.55 15.07 5.10 5.10 Total: -1.00 -32.57 338.55 -11.41 -43.99 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.72 Total: 2.10 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -5.83 Total: -13.66 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 1.06 Total: -53.55 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.57 -11.41 -43.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755488638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.411 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds