Wall clock time and date at job start Tue Mar 31 2020 05:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46757 * 2 1 4 4 C 1.50696 * 109.46853 * 119.99910 * 2 1 3 5 5 N 1.28014 * 120.00165 * 359.97438 * 4 2 1 6 6 N 1.40105 * 120.00028 * 180.02562 * 5 4 2 7 7 C 1.37979 * 120.00073 * 180.02562 * 6 5 4 8 8 N 1.31001 * 125.07188 * 0.02562 * 7 6 5 9 9 C 1.35839 * 109.62289 * 179.97438 * 8 7 6 10 10 C 1.39739 * 133.38915 * 180.02562 * 9 8 7 11 11 C 1.37677 * 119.77656 * 179.97438 * 10 9 8 12 12 C 1.38715 * 120.50233 * 0.02562 * 11 10 9 13 13 C 1.37951 * 120.43645 * 359.97438 * 12 11 10 14 14 C 1.38675 * 119.85194 * 0.04722 * 13 12 11 15 15 N 1.36609 * 125.07433 * 179.72000 * 7 6 5 16 16 H 0.96999 * 126.37632 * 359.97438 * 15 7 6 17 17 C 1.53001 * 109.47206 * 239.99944 * 2 1 3 18 18 C 1.50696 * 109.47055 * 59.99854 * 17 2 1 19 19 H 1.08004 * 120.00489 * 0.02562 * 18 17 2 20 20 C 1.37882 * 119.99748 * 179.97438 * 18 17 2 21 21 N 1.31507 * 120.00173 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99735 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47233 * 60.00465 * 22 20 18 24 24 H 1.48500 * 109.46997 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47364 * 300.00392 * 22 20 18 26 26 H 1.08996 * 109.47285 * 300.00501 * 1 2 3 27 27 H 1.09002 * 109.46559 * 60.00106 * 1 2 3 28 28 H 1.09002 * 109.46920 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46541 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47232 * 299.99798 * 3 2 1 31 31 H 1.09000 * 109.47381 * 60.00162 * 3 2 1 32 32 H 1.07999 * 119.99822 * 180.02562 * 4 2 1 33 33 H 0.96999 * 119.99953 * 0.02562 * 6 5 4 34 34 H 1.07996 * 120.11107 * 0.02562 * 10 9 8 35 35 H 1.08007 * 119.74931 * 179.97438 * 11 10 9 36 36 H 1.08000 * 119.78163 * 180.02562 * 12 11 10 37 37 H 1.08004 * 120.07568 * 179.97438 * 13 12 11 38 38 H 1.08995 * 109.46867 * 180.02562 * 17 2 1 39 39 H 1.08998 * 109.46710 * 300.00283 * 17 2 1 40 40 H 0.96994 * 120.00363 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.2004 -1.1964 2.0734 6 7 1.6674 -1.8564 3.2176 7 6 0.7708 -2.3808 4.1258 8 7 -0.5333 -2.3193 4.0175 9 6 -1.1091 -2.9347 5.0828 10 6 -2.4357 -3.1553 5.4623 11 6 -2.7095 -3.8303 6.6306 12 6 -1.6781 -4.2928 7.4347 13 6 -0.3631 -4.0832 7.0743 14 6 -0.0687 -3.4049 5.9012 15 7 1.1104 -3.0466 5.2693 16 1 2.0099 -3.2320 5.5815 17 6 2.0401 -0.7213 -1.2492 18 6 1.5378 -0.0109 -2.4797 19 1 0.9171 0.8675 -2.3807 20 6 1.8713 -0.4817 -3.7320 21 7 2.6274 -1.5509 -3.8526 22 14 1.2492 0.3993 -5.2572 23 1 1.7443 1.7993 -5.2567 24 1 1.7441 -0.3009 -6.4696 25 1 -0.2358 0.3994 -5.2577 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.0941 -0.8087 1.4016 33 1 2.6211 -1.9447 3.3713 34 1 -3.2436 -2.7983 4.8408 35 1 -3.7350 -4.0002 6.9237 36 1 -1.9061 -4.8213 8.3486 37 1 0.4353 -4.4455 7.7050 38 1 3.1301 -0.7216 -1.2490 39 1 1.6767 -1.7489 -1.2492 40 1 2.8624 -1.8819 -4.7335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755488638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:34 Heat of formation + Delta-G solvation = 91.564270 kcal Electronic energy + Delta-G solvation = -21224.269372 eV Core-core repulsion = 18039.718306 eV Total energy + Delta-G solvation = -3184.551066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.97757 -39.46990 -38.32620 -36.88899 -34.49789 -34.10257 -32.53368 -30.80055 -29.31924 -28.83232 -27.90372 -25.83863 -24.00853 -23.32889 -23.13867 -21.94065 -20.03304 -19.11755 -18.39784 -18.22700 -17.80184 -17.07844 -16.62056 -16.49765 -15.55144 -15.19527 -15.09714 -14.98331 -14.75297 -14.51576 -14.06504 -13.93129 -13.02924 -12.81289 -12.77423 -12.69644 -12.59646 -12.51930 -12.38325 -12.27351 -12.06897 -11.79899 -11.63966 -11.17499 -11.16147 -10.87612 -10.73230 -10.46792 -10.27295 -9.21144 -8.52318 -8.11126 -6.17691 0.07228 0.59051 0.84541 1.14531 1.46192 1.48200 1.54933 2.02493 2.36713 2.48438 2.99004 3.23977 3.29161 3.79804 3.88975 4.14560 4.25809 4.29486 4.38577 4.42348 4.46715 4.58157 4.70392 4.87958 4.99151 5.05839 5.13313 5.17714 5.21727 5.40032 5.45493 5.50942 5.53842 5.57556 5.58793 5.65534 5.71472 5.81617 5.92233 6.03899 6.33623 6.57487 6.78198 6.95845 7.37298 7.49469 9.00931 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.031696 B = 0.002814 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.172277 B = 9946.949497 C =10197.965418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.005 4.005 3 C -0.117 4.117 4 C 0.095 3.905 5 N -0.243 5.243 6 N -0.560 5.560 7 C 0.551 3.449 8 N -0.561 5.561 9 C 0.035 3.965 10 C -0.105 4.105 11 C -0.115 4.115 12 C -0.112 4.112 13 C -0.104 4.104 14 C 0.030 3.970 15 N -0.604 5.604 16 H 0.436 0.564 17 C 0.048 3.952 18 C -0.514 4.514 19 H 0.071 0.929 20 C 0.000 4.000 21 N -0.937 5.937 22 Si 0.954 3.046 23 H -0.263 1.263 24 H -0.291 1.291 25 H -0.272 1.272 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.129 0.871 33 H 0.407 0.593 34 H 0.122 0.878 35 H 0.156 0.844 36 H 0.165 0.835 37 H 0.151 0.849 38 H 0.005 0.995 39 H -0.018 1.018 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 -3.020 23.812 24.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.008 4.008 3 C -0.175 4.175 4 C -0.121 4.121 5 N -0.045 5.045 6 N -0.291 5.291 7 C 0.193 3.807 8 N -0.292 5.292 9 C -0.083 4.083 10 C -0.125 4.125 11 C -0.135 4.135 12 C -0.131 4.131 13 C -0.124 4.124 14 C -0.078 4.078 15 N -0.227 5.227 16 H 0.279 0.721 17 C 0.010 3.990 18 C -0.553 4.553 19 H 0.089 0.911 20 C -0.198 4.198 21 N -0.578 5.578 22 Si 0.780 3.220 23 H -0.188 1.188 24 H -0.216 1.216 25 H -0.197 1.197 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.146 0.854 33 H 0.250 0.750 34 H 0.140 0.860 35 H 0.174 0.826 36 H 0.183 0.817 37 H 0.169 0.831 38 H 0.023 0.977 39 H 0.000 1.000 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.692 -2.903 23.313 23.782 hybrid contribution 2.211 -0.355 -0.702 2.346 sum -1.482 -3.259 22.611 22.893 Atomic orbital electron populations 1.21483 0.94212 1.00368 1.00479 1.19555 0.96090 0.95694 0.89438 1.21652 1.01062 0.93067 1.01757 1.26430 0.97527 0.94351 0.93798 1.74498 1.28324 1.07380 0.94339 1.43923 1.05597 1.60010 1.19597 1.18739 0.87508 0.91291 0.83153 1.70755 1.03110 1.29272 1.26020 1.19462 0.95584 1.00958 0.92305 1.20485 0.92527 1.01086 0.98424 1.21240 1.01219 0.97764 0.93260 1.21286 0.90729 1.00242 1.00875 1.20297 0.98777 0.99983 0.93393 1.18932 0.84943 1.05517 0.98424 1.42509 1.09333 1.51362 1.19459 0.72146 1.18952 0.95138 0.93786 0.91172 1.21555 1.30478 1.12181 0.91050 0.91069 1.25856 0.95638 0.95824 1.02434 1.70083 1.38750 1.24832 1.24136 0.85655 0.78777 0.79031 0.78536 1.18809 1.21644 1.19724 0.93011 0.92660 0.95248 0.92147 0.91834 0.92229 0.85446 0.75022 0.85993 0.82636 0.81743 0.83112 0.97680 0.99969 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.37 7.45 71.98 0.54 -3.84 16 2 C 0.00 -0.19 0.75 -52.92 -0.04 -0.23 16 3 C -0.12 -3.94 8.20 71.98 0.59 -3.34 16 4 C 0.09 3.22 9.56 88.66 0.85 4.07 16 5 N -0.24 -8.67 9.94 -50.47 -0.50 -9.18 16 6 N -0.56 -16.17 6.39 -58.43 -0.37 -16.55 16 7 C 0.55 16.92 8.99 260.43 2.34 19.26 16 8 N -0.56 -20.89 11.13 -190.24 -2.12 -23.01 16 9 C 0.03 1.08 7.22 39.43 0.28 1.37 16 10 C -0.10 -2.71 10.10 22.50 0.23 -2.48 16 11 C -0.11 -2.01 10.01 22.25 0.22 -1.79 16 12 C -0.11 -1.61 10.03 22.32 0.22 -1.38 16 13 C -0.10 -1.73 10.06 22.31 0.22 -1.51 16 14 C 0.03 0.73 7.30 38.74 0.28 1.01 16 15 N -0.60 -13.34 6.28 -189.17 -1.19 -14.53 16 16 H 0.44 5.73 8.96 -92.71 -0.83 4.89 16 17 C 0.05 2.37 4.02 29.85 0.12 2.49 16 18 C -0.51 -27.40 7.65 25.60 0.20 -27.20 16 19 H 0.07 3.59 5.68 -2.91 -0.02 3.57 16 20 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 21 N -0.94 -55.94 13.29 21.45 0.28 -55.66 16 22 Si 0.95 43.50 29.54 68.60 2.03 45.53 16 23 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 26 H 0.05 1.94 8.06 -2.39 -0.02 1.92 16 27 H 0.05 2.28 6.62 -2.39 -0.02 2.26 16 28 H 0.03 1.28 8.06 -2.39 -0.02 1.26 16 29 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.06 2.28 6.62 -2.39 -0.02 2.27 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.13 3.51 8.00 -2.91 -0.02 3.49 16 33 H 0.41 8.34 8.75 -213.32 -1.87 6.47 16 34 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 37 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 39 H -0.02 -1.03 8.14 -2.39 -0.02 -1.04 16 40 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -73.87 338.55 3.02 -70.85 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -1.63 Total: 15.68 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 6.52 Total: -13.15 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -3.89 Total: -118.92 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -73.87 3.02 -70.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755488638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.417 kcal (2) G-P(sol) polarization free energy of solvation -73.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds