Wall clock time and date at job start Tue Mar 31 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47402 * 2 1 4 4 C 1.50696 * 109.47242 * 119.99939 * 2 1 3 5 5 N 1.28014 * 120.00165 * 239.99968 * 4 2 1 6 6 N 1.40105 * 120.00028 * 180.02562 * 5 4 2 7 7 C 1.37973 * 119.99716 * 180.02562 * 6 5 4 8 8 N 1.30996 * 125.07700 * 359.69316 * 7 6 5 9 9 C 1.35845 * 109.62401 * 179.83222 * 8 7 6 10 10 C 1.39739 * 133.38919 * 180.12866 * 9 8 7 11 11 C 1.37677 * 119.77683 * 180.34835 * 10 9 8 12 12 C 1.38715 * 120.50193 * 0.02562 * 11 10 9 13 13 C 1.37962 * 120.43649 * 359.97438 * 12 11 10 14 14 C 1.38675 * 119.85253 * 0.02562 * 13 12 11 15 15 N 1.36616 * 125.07305 * 180.02562 * 7 6 5 16 16 C 1.46500 * 126.37790 * 359.97438 * 15 7 6 17 17 C 1.53004 * 109.47309 * 240.00426 * 2 1 3 18 18 C 1.50695 * 109.47127 * 64.99671 * 17 2 1 19 19 H 1.08002 * 120.00413 * 0.02562 * 18 17 2 20 20 C 1.37883 * 119.99845 * 180.02562 * 18 17 2 21 21 N 1.31516 * 119.99926 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00027 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.47032 * 90.00371 * 22 20 18 24 24 H 1.48498 * 109.47466 * 210.00175 * 22 20 18 25 25 H 1.48503 * 109.47443 * 330.00778 * 22 20 18 26 26 H 1.08998 * 109.46710 * 300.00139 * 1 2 3 27 27 H 1.09002 * 109.47144 * 59.99836 * 1 2 3 28 28 H 1.08995 * 109.46867 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99822 * 60.00300 * 4 2 1 30 30 H 0.96999 * 119.99953 * 0.02562 * 6 5 4 31 31 H 1.07997 * 120.11142 * 0.32229 * 10 9 8 32 32 H 1.07997 * 119.74441 * 180.02562 * 11 10 9 33 33 H 1.08000 * 119.78123 * 180.02562 * 12 11 10 34 34 H 1.07999 * 120.07109 * 180.02562 * 13 12 11 35 35 H 1.08994 * 109.47842 * 90.02319 * 16 15 7 36 36 H 1.08996 * 109.47222 * 210.02828 * 16 15 7 37 37 H 1.09007 * 109.47182 * 330.02119 * 16 15 7 38 38 H 1.08998 * 109.47125 * 184.99855 * 17 2 1 39 39 H 1.08999 * 109.46709 * 304.99813 * 17 2 1 40 40 H 0.96996 * 120.00023 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7684 -0.0883 2.0731 6 7 3.2358 -0.7489 3.2167 7 6 4.0286 -0.0782 4.1252 8 7 4.4085 1.1707 4.0150 9 6 5.1756 1.5102 5.0835 10 6 5.8239 2.6881 5.4642 11 6 6.5516 2.7211 6.6325 12 6 6.6466 1.5936 7.4349 13 6 6.0125 0.4229 7.0732 14 6 5.2752 0.3713 5.8998 15 7 4.5400 -0.6192 5.2707 16 6 4.3467 -1.9917 5.7450 17 6 2.0401 -0.7212 -1.2493 18 6 1.6414 0.0571 -2.4766 19 1 1.0806 0.9747 -2.3757 20 6 1.9924 -0.4021 -3.7284 21 7 1.6449 0.2774 -4.7994 22 14 2.9629 -1.9886 -3.9029 23 1 2.0237 -3.1331 -4.0191 24 1 3.8110 -1.9188 -5.1199 25 1 3.8253 -2.1754 -2.7085 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.7715 -1.7444 1.4013 30 1 3.0021 -1.6778 3.3699 31 1 5.7548 3.5694 4.8438 32 1 7.0521 3.6319 6.9264 33 1 7.2202 1.6326 8.3491 34 1 6.0901 -0.4513 7.7025 35 1 5.1379 -2.6281 5.3487 36 1 4.3790 -2.0077 6.8343 37 1 3.3790 -2.3608 5.4049 38 1 3.1264 -0.7993 -1.2056 39 1 1.6055 -1.7197 -1.2952 40 1 1.8916 -0.0458 -5.6800 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766011963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:15 Heat of formation + Delta-G solvation = 118.576503 kcal Electronic energy + Delta-G solvation = -21089.365855 eV Core-core repulsion = 17905.986127 eV Total energy + Delta-G solvation = -3183.379727 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.09827 -38.03287 -37.08837 -35.09165 -34.28757 -32.49477 -31.18750 -30.45619 -28.32848 -27.53774 -27.15916 -24.27445 -22.54597 -22.39327 -21.36533 -20.39622 -19.32508 -18.01730 -17.37427 -16.85458 -16.68423 -16.17916 -16.13227 -14.56565 -14.27890 -14.17083 -14.03207 -13.79392 -13.55605 -13.37253 -13.12680 -13.06414 -12.59691 -12.06273 -12.04706 -11.55813 -11.51362 -11.19107 -11.10190 -10.85266 -10.47020 -10.20695 -9.98521 -9.88060 -9.79523 -9.67165 -9.20341 -9.12859 -8.54878 -8.26717 -7.49895 -6.04818 -4.02844 0.96560 1.43490 1.77940 2.30055 2.92237 3.02097 3.28688 3.37574 3.40062 3.88852 4.18146 4.30533 4.43870 4.68847 4.72246 4.89101 4.96656 5.04932 5.07142 5.25374 5.28832 5.38879 5.50226 5.64228 5.83410 5.94840 5.98230 6.06077 6.22149 6.35491 6.42781 6.46494 6.53576 6.65440 6.77896 6.85835 6.95599 7.18734 7.31492 7.32525 7.74828 7.85243 8.42552 8.51782 9.00193 9.56845 11.08303 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.024733 B = 0.002923 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.798862 B = 9576.743268 C = 9768.787569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.027 4.027 3 H 0.087 0.913 4 C 0.092 3.908 5 N -0.222 5.222 6 N -0.566 5.566 7 C 0.565 3.435 8 N -0.509 5.509 9 C 0.080 3.920 10 C -0.077 4.077 11 C -0.124 4.124 12 C -0.121 4.121 13 C -0.104 4.104 14 C 0.037 3.963 15 N -0.520 5.520 16 C 0.080 3.920 17 C -0.003 4.003 18 C -0.515 4.515 19 H 0.078 0.922 20 C 0.068 3.932 21 N -0.901 5.901 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.267 1.267 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.101 0.899 30 H 0.387 0.613 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.018 0.982 39 H 0.015 0.985 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.192 -4.683 25.452 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.048 4.048 3 H 0.106 0.894 4 C -0.124 4.124 5 N -0.024 5.024 6 N -0.295 5.295 7 C 0.210 3.790 8 N -0.237 5.237 9 C -0.039 4.039 10 C -0.098 4.098 11 C -0.144 4.144 12 C -0.141 4.141 13 C -0.125 4.125 14 C -0.069 4.069 15 N -0.219 5.219 16 C -0.062 4.062 17 C -0.041 4.041 18 C -0.553 4.553 19 H 0.096 0.904 20 C -0.133 4.133 21 N -0.540 5.540 22 Si 0.704 3.296 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.191 1.191 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.118 0.882 30 H 0.227 0.773 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.473 -3.352 24.915 25.960 hybrid contribution 0.259 -3.038 0.424 3.079 sum 6.732 -6.390 25.340 26.986 Atomic orbital electron populations 1.21693 0.93903 1.01434 1.01747 1.20135 0.95709 1.00247 0.88757 0.89426 1.26755 0.92857 0.97996 0.94841 1.74646 1.11350 1.22967 0.93399 1.44175 1.53268 1.11632 1.20422 1.18752 0.90849 0.87410 0.81991 1.70915 1.20420 1.08560 1.23765 1.19012 0.99157 0.93964 0.91757 1.20256 0.96921 0.95722 0.96859 1.20834 1.00247 0.98617 0.94721 1.20746 1.00838 0.92329 1.00188 1.19799 0.99398 0.99030 0.94304 1.18592 1.01051 0.89344 0.97938 1.44926 1.45682 1.11415 1.19923 1.21896 1.02675 0.79937 1.01709 1.19611 0.96325 0.95829 0.92376 1.21046 1.35769 1.09755 0.88755 0.90422 1.24988 0.95506 0.96915 0.95921 1.69899 1.46903 1.39162 0.98048 0.86833 0.80671 0.84301 0.77783 1.20338 1.21391 1.19150 0.94294 0.90180 0.93270 0.88161 0.77300 0.85284 0.85559 0.85654 0.86573 0.90854 0.89419 0.90258 0.96331 0.96652 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.99 37.16 0.33 -1.85 16 2 C -0.03 -0.51 2.75 -91.77 -0.25 -0.77 16 3 H 0.09 1.80 8.11 -51.93 -0.42 1.38 16 4 C 0.09 1.48 9.66 -13.87 -0.13 1.35 16 5 N -0.22 -3.88 11.17 32.67 0.36 -3.52 16 6 N -0.57 -8.23 6.39 30.18 0.19 -8.04 16 7 C 0.57 8.85 8.62 -319.80 -2.76 6.09 16 8 N -0.51 -9.32 11.13 -11.48 -0.13 -9.45 16 9 C 0.08 1.25 7.22 -84.69 -0.61 0.64 16 10 C -0.08 -1.00 10.10 -39.23 -0.40 -1.40 16 11 C -0.12 -1.24 10.01 -39.61 -0.40 -1.64 16 12 C -0.12 -1.11 10.03 -39.51 -0.40 -1.51 16 13 C -0.10 -1.06 10.04 -39.52 -0.40 -1.46 16 14 C 0.04 0.49 6.87 -83.86 -0.58 -0.08 16 15 N -0.52 -6.38 3.23 -122.42 -0.40 -6.78 16 16 C 0.08 0.56 10.96 59.85 0.66 1.21 16 17 C 0.00 -0.06 3.50 -27.88 -0.10 -0.16 16 18 C -0.52 -14.01 8.96 -34.44 -0.31 -14.31 16 19 H 0.08 2.25 7.30 -52.49 -0.38 1.87 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 22 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.51 6.95 -51.93 -0.36 1.15 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.10 1.30 8.00 -52.49 -0.42 0.88 16 30 H 0.39 4.13 7.79 -182.59 -1.42 2.70 16 31 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.42 7.45 -51.93 -0.39 0.03 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 39 H 0.02 0.33 7.57 -51.93 -0.39 -0.06 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 340.75 15.07 5.13 5.13 Total: -1.00 -34.26 340.75 -10.87 -45.13 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.71 Total: -0.52 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -5.43 Total: -12.05 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.81 Total: -54.27 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.26 -10.87 -45.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766011963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.708 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds