Wall clock time and date at job start Tue Mar 31 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.27274 * 2 1 4 4 C 1.54947 * 110.30874 * 122.19316 * 2 1 3 5 5 C 1.55307 * 100.94272 * 155.36267 * 4 2 1 6 6 C 1.54390 * 102.25162 * 325.86753 * 5 4 2 7 7 H 1.09000 * 109.82918 * 261.84296 * 6 5 4 8 8 C 1.52994 * 109.83034 * 140.86954 * 6 5 4 9 9 C 1.52996 * 109.47056 * 175.41436 * 8 6 5 10 10 C 1.50704 * 109.47185 * 179.97438 * 9 8 6 11 11 O 1.20823 * 120.00082 * 0.02562 * 10 9 8 12 12 O 1.34229 * 120.00081 * 179.97438 * 10 9 8 13 13 C 1.45198 * 117.00063 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47212 * 180.02562 * 13 12 10 15 15 O 1.42897 * 109.47257 * 64.99966 * 14 13 12 16 16 C 1.42903 * 114.00141 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47184 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99592 * 0.02562 * 17 16 15 19 19 C 1.37870 * 119.99848 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00063 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00044 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46801 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47107 * 119.99884 * 21 19 17 24 24 H 1.48496 * 109.47035 * 240.00128 * 21 19 17 25 25 O 1.43244 * 107.58641 * 21.35598 * 6 5 4 26 26 H 1.09002 * 109.47153 * 180.63696 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.63886 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.63868 * 1 2 3 29 29 H 1.09000 * 111.12910 * 273.27566 * 4 2 1 30 30 H 1.09002 * 111.12472 * 37.44413 * 4 2 1 31 31 H 1.09003 * 110.84897 * 207.68146 * 5 4 2 32 32 H 1.09002 * 111.02648 * 84.13662 * 5 4 2 33 33 H 1.08998 * 109.47286 * 295.41560 * 8 6 5 34 34 H 1.09003 * 109.47375 * 55.41067 * 8 6 5 35 35 H 1.09000 * 109.47358 * 299.99693 * 9 8 6 36 36 H 1.08998 * 109.47528 * 60.00307 * 9 8 6 37 37 H 1.09002 * 109.47105 * 300.00094 * 13 12 10 38 38 H 1.09001 * 109.47358 * 60.00067 * 13 12 10 39 39 H 1.09001 * 109.47193 * 184.99864 * 14 13 12 40 40 H 1.08994 * 109.47109 * 304.99927 * 14 13 12 41 41 H 1.08996 * 109.47227 * 299.99935 * 16 15 14 42 42 H 1.08997 * 109.46643 * 59.99945 * 16 15 14 43 43 H 0.97002 * 119.99879 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7742 1.2297 5 6 3.4699 -1.2031 0.7180 6 6 3.2113 -1.4412 -0.7854 7 1 3.0625 -2.5049 -0.9711 8 6 4.3991 -0.9310 -1.6036 9 6 4.1863 -1.2732 -3.0795 10 6 5.3561 -0.7701 -3.8856 11 8 6.2667 -0.1970 -3.3359 12 8 5.3868 -0.9595 -5.2141 13 6 6.5446 -0.4488 -5.9262 14 6 6.4019 -0.7558 -7.4183 15 8 5.2856 -0.0378 -7.9477 16 6 5.0626 -0.2560 -9.3422 17 6 3.8675 0.5449 -9.7912 18 1 3.3321 1.1593 -9.0825 19 6 3.4584 0.4939 -11.1068 20 7 4.1107 -0.2539 -11.9698 21 14 1.9774 1.4872 -11.6635 22 1 1.4244 2.2403 -10.5093 23 1 2.3913 2.4409 -12.7238 24 1 0.9398 0.5703 -12.2000 25 8 2.0286 -0.7157 -1.1413 26 1 -0.3633 -1.0276 0.0114 27 1 -0.3633 0.5039 -0.8957 28 1 -0.3634 0.5237 0.8842 29 1 2.1497 -0.1223 2.0994 30 1 1.4470 -1.6429 1.4493 31 1 3.7966 -2.1217 1.2055 32 1 4.2001 -0.4073 0.8646 33 1 4.4815 0.1499 -1.4894 34 1 5.3147 -1.4045 -1.2491 35 1 4.1041 -2.3541 -3.1937 36 1 3.2709 -0.7996 -3.4340 37 1 6.6131 0.6295 -5.7824 38 1 7.4467 -0.9247 -5.5416 39 1 7.3095 -0.4524 -7.9400 40 1 6.2441 -1.8255 -7.5556 41 1 5.9423 0.0574 -9.9042 42 1 4.8768 -1.3153 -9.5191 43 1 3.8226 -0.2900 -12.8954 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815213799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:20 Heat of formation + Delta-G solvation = -203.514069 kcal Electronic energy + Delta-G solvation = -22180.140264 eV Core-core repulsion = 18610.899219 eV Total energy + Delta-G solvation = -3569.241045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.166 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39947 -39.82117 -37.09456 -36.02116 -34.17352 -32.75262 -32.57395 -31.15002 -29.99063 -27.18661 -26.67858 -23.86637 -22.43714 -22.05159 -21.86850 -20.97401 -20.25742 -17.62149 -17.34613 -16.63091 -16.55882 -16.27160 -15.73497 -15.42628 -14.70201 -14.61319 -14.37031 -14.11267 -14.04960 -13.51751 -13.42249 -12.94052 -12.76925 -12.46880 -12.40789 -12.05207 -12.03493 -11.83903 -11.40691 -11.35511 -11.19976 -11.14252 -11.00288 -10.88619 -10.85512 -10.71230 -10.33543 -10.26773 -10.01543 -9.75598 -9.09495 -8.86013 -8.19496 -6.10425 -4.11852 2.36820 2.86375 3.30635 3.36931 3.44077 3.45707 4.13880 4.34569 4.38280 4.40047 4.66911 4.75481 4.79135 4.81385 4.97549 5.02962 5.13316 5.22820 5.26282 5.27236 5.31469 5.35823 5.37559 5.48864 5.50017 5.55382 5.63020 5.75238 5.87450 5.89716 5.93759 5.96333 6.01831 6.13536 6.69031 6.82475 7.07341 7.41648 7.80317 7.93632 8.14421 8.54657 9.01338 9.52980 11.01233 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.002792 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.434854 B =10026.195542 C =11489.685092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.074 3.926 3 H 0.070 0.930 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.081 3.919 7 H 0.083 0.917 8 C -0.116 4.116 9 C -0.112 4.112 10 C 0.460 3.540 11 O -0.522 6.522 12 O -0.341 6.341 13 C 0.074 3.926 14 C 0.062 3.938 15 O -0.391 6.391 16 C 0.194 3.806 17 C -0.513 4.513 18 H 0.067 0.933 19 C 0.055 3.945 20 N -0.899 5.899 21 Si 0.908 3.092 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.282 1.282 25 O -0.372 6.372 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.006 0.994 42 H 0.007 0.993 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.427 -3.919 26.530 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.017 3.983 3 H 0.088 0.912 4 C -0.190 4.190 5 C -0.189 4.189 6 C 0.023 3.977 7 H 0.101 0.899 8 C -0.154 4.154 9 C -0.149 4.149 10 C 0.304 3.696 11 O -0.412 6.412 12 O -0.257 6.257 13 C 0.000 4.000 14 C -0.016 4.016 15 O -0.310 6.310 16 C 0.119 3.881 17 C -0.552 4.552 18 H 0.086 0.914 19 C -0.146 4.146 20 N -0.539 5.539 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.209 1.209 24 H -0.208 1.208 25 O -0.292 6.292 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.024 0.976 42 H 0.025 0.975 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.350 -3.670 26.360 26.649 hybrid contribution -0.208 0.328 -0.496 0.630 sum -1.559 -3.342 25.865 26.126 Atomic orbital electron populations 1.21890 0.93707 1.02800 1.02515 1.22965 0.94902 0.95667 0.84809 0.91230 1.23323 0.96226 1.00911 0.98524 1.23167 0.97828 1.02900 0.95043 1.22757 0.85292 0.96295 0.93353 0.89899 1.21820 0.97719 1.03111 0.92748 1.21340 0.96171 1.03619 0.93805 1.23785 0.87759 0.76325 0.81695 1.90622 1.38470 1.40060 1.72071 1.86611 1.45817 1.72696 1.20599 1.23190 0.85741 1.00070 0.90974 1.22319 0.91985 0.96980 0.90326 1.87922 1.46698 1.68244 1.28179 1.20245 0.96424 0.96276 0.75106 1.21095 1.12301 1.27265 0.94492 0.91437 1.24953 0.97587 0.95857 0.96166 1.69973 1.40437 1.39597 1.03853 0.86270 0.81871 0.79684 0.78626 1.19431 1.20858 1.20804 1.88486 1.41905 1.64714 1.34050 0.91944 0.91624 0.91393 0.90031 0.90278 0.89950 0.90155 0.90464 0.90088 0.87842 0.86803 0.90592 0.90541 0.92026 0.93224 0.97616 0.97482 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.62 37.16 0.36 -0.73 16 2 C 0.07 0.60 4.07 -25.70 -0.10 0.50 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.15 -0.93 6.57 -24.48 -0.16 -1.09 16 5 C -0.15 -0.98 6.55 -24.78 -0.16 -1.14 16 6 C 0.08 0.69 3.52 -26.01 -0.09 0.59 16 7 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 8 C -0.12 -1.14 4.07 -26.74 -0.11 -1.25 16 9 C -0.11 -1.28 5.72 -27.88 -0.16 -1.44 16 10 C 0.46 7.01 7.96 36.01 0.29 7.30 16 11 O -0.52 -8.83 15.73 -18.75 -0.29 -9.13 16 12 O -0.34 -5.96 10.19 -42.02 -0.43 -6.39 16 13 C 0.07 1.23 5.84 37.16 0.22 1.44 16 14 C 0.06 1.16 6.33 37.16 0.24 1.40 16 15 O -0.39 -9.72 10.30 -38.80 -0.40 -10.12 16 16 C 0.19 5.39 5.69 36.01 0.20 5.60 16 17 C -0.51 -15.39 9.43 -34.44 -0.32 -15.72 16 18 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 21 Si 0.91 22.10 29.54 -169.99 -5.02 17.08 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 25 O -0.37 -3.95 10.32 -35.23 -0.36 -4.31 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.45 8.06 -51.93 -0.42 0.03 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.52 7.85 -51.93 -0.41 0.11 16 33 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.11 1.37 7.88 -51.93 -0.41 0.96 16 37 H 0.08 1.29 8.13 -51.93 -0.42 0.87 16 38 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -34.15 361.60 -7.77 -41.92 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -7.54 Total: -5.10 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 0.09 Total: -3.02 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.74 Total: -26.38 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -1.49 Total: -29.95 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.15 -7.77 -41.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815213799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.598 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds