Wall clock time and date at job start Tue Mar 31 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.27274 * 2 1 4 4 C 1.54947 * 110.30874 * 122.19316 * 2 1 3 5 5 C 1.55307 * 100.94272 * 155.36267 * 4 2 1 6 6 C 1.54390 * 102.25162 * 325.86753 * 5 4 2 7 7 H 1.09000 * 109.82918 * 261.84296 * 6 5 4 8 8 C 1.52994 * 109.83034 * 140.86954 * 6 5 4 9 9 C 1.52996 * 109.47056 * 175.41436 * 8 6 5 10 10 C 1.50704 * 109.47185 * 179.97438 * 9 8 6 11 11 O 1.20823 * 120.00082 * 0.02562 * 10 9 8 12 12 O 1.34229 * 120.00081 * 179.97438 * 10 9 8 13 13 C 1.45198 * 117.00063 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47212 * 180.02562 * 13 12 10 15 15 O 1.42897 * 109.47257 * 64.99966 * 14 13 12 16 16 C 1.42903 * 114.00141 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47184 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99592 * 0.02562 * 17 16 15 19 19 C 1.37870 * 119.99848 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00063 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00044 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46801 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47107 * 119.99884 * 21 19 17 24 24 H 1.48496 * 109.47035 * 240.00128 * 21 19 17 25 25 O 1.43244 * 107.58641 * 21.35598 * 6 5 4 26 26 H 1.09002 * 109.47153 * 180.63696 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.63886 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.63868 * 1 2 3 29 29 H 1.09000 * 111.12910 * 273.27566 * 4 2 1 30 30 H 1.09002 * 111.12472 * 37.44413 * 4 2 1 31 31 H 1.09003 * 110.84897 * 207.68146 * 5 4 2 32 32 H 1.09002 * 111.02648 * 84.13662 * 5 4 2 33 33 H 1.08998 * 109.47286 * 295.41560 * 8 6 5 34 34 H 1.09003 * 109.47375 * 55.41067 * 8 6 5 35 35 H 1.09000 * 109.47358 * 299.99693 * 9 8 6 36 36 H 1.08998 * 109.47528 * 60.00307 * 9 8 6 37 37 H 1.09002 * 109.47105 * 300.00094 * 13 12 10 38 38 H 1.09001 * 109.47358 * 60.00067 * 13 12 10 39 39 H 1.09001 * 109.47193 * 184.99864 * 14 13 12 40 40 H 1.08994 * 109.47109 * 304.99927 * 14 13 12 41 41 H 1.08996 * 109.47227 * 299.99935 * 16 15 14 42 42 H 1.08997 * 109.46643 * 59.99945 * 16 15 14 43 43 H 0.97002 * 119.99879 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7742 1.2297 5 6 3.4699 -1.2031 0.7180 6 6 3.2113 -1.4412 -0.7854 7 1 3.0625 -2.5049 -0.9711 8 6 4.3991 -0.9310 -1.6036 9 6 4.1863 -1.2732 -3.0795 10 6 5.3561 -0.7701 -3.8856 11 8 6.2667 -0.1970 -3.3359 12 8 5.3868 -0.9595 -5.2141 13 6 6.5446 -0.4488 -5.9262 14 6 6.4019 -0.7558 -7.4183 15 8 5.2856 -0.0378 -7.9477 16 6 5.0626 -0.2560 -9.3422 17 6 3.8675 0.5449 -9.7912 18 1 3.3321 1.1593 -9.0825 19 6 3.4584 0.4939 -11.1068 20 7 4.1107 -0.2539 -11.9698 21 14 1.9774 1.4872 -11.6635 22 1 1.4244 2.2403 -10.5093 23 1 2.3913 2.4409 -12.7238 24 1 0.9398 0.5703 -12.2000 25 8 2.0286 -0.7157 -1.1413 26 1 -0.3633 -1.0276 0.0114 27 1 -0.3633 0.5039 -0.8957 28 1 -0.3634 0.5237 0.8842 29 1 2.1497 -0.1223 2.0994 30 1 1.4470 -1.6429 1.4493 31 1 3.7966 -2.1217 1.2055 32 1 4.2001 -0.4073 0.8646 33 1 4.4815 0.1499 -1.4894 34 1 5.3147 -1.4045 -1.2491 35 1 4.1041 -2.3541 -3.1937 36 1 3.2709 -0.7996 -3.4340 37 1 6.6131 0.6295 -5.7824 38 1 7.4467 -0.9247 -5.5416 39 1 7.3095 -0.4524 -7.9400 40 1 6.2441 -1.8255 -7.5556 41 1 5.9423 0.0574 -9.9042 42 1 4.8768 -1.3153 -9.5191 43 1 3.8226 -0.2900 -12.8954 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815213799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:20 Heat of formation + Delta-G solvation = -224.556784 kcal Electronic energy + Delta-G solvation = -22181.052745 eV Core-core repulsion = 18610.899219 eV Total energy + Delta-G solvation = -3570.153525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.166 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58027 -40.54827 -38.79657 -37.51335 -35.00927 -34.94769 -33.18096 -32.07776 -31.34919 -29.08851 -27.68750 -24.80262 -24.49345 -23.42813 -22.45235 -21.92289 -21.13633 -18.83372 -18.69514 -18.15356 -17.82787 -17.49586 -17.12720 -16.65552 -16.43363 -16.20870 -15.35517 -15.18250 -15.07136 -14.69566 -14.31036 -14.16630 -13.89498 -13.67985 -13.35900 -13.22982 -13.16719 -12.90554 -12.73530 -12.68650 -12.59913 -12.43795 -12.10771 -12.01925 -11.89852 -11.74319 -11.68159 -11.60406 -11.45456 -11.27962 -10.91218 -10.44086 -10.28934 -8.33776 -6.45964 1.15337 1.39719 1.41108 1.56003 1.69027 2.33917 2.85525 3.00065 3.04816 3.54943 3.63057 3.77008 3.89234 3.91642 4.04913 4.09544 4.15030 4.24818 4.35620 4.40292 4.46362 4.50806 4.55971 4.64767 4.70610 4.75388 4.81607 4.83619 4.93174 4.94494 5.04263 5.12838 5.15849 5.20077 5.31071 5.36234 5.45372 5.53240 5.93599 6.19711 6.48235 6.69828 6.78419 7.25739 8.78710 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.016492 B = 0.002792 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.434854 B =10026.195542 C =11489.685092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.145 4.145 5 C -0.149 4.149 6 C 0.078 3.922 7 H 0.095 0.905 8 C -0.110 4.110 9 C -0.107 4.107 10 C 0.459 3.541 11 O -0.541 6.541 12 O -0.362 6.362 13 C 0.077 3.923 14 C 0.053 3.947 15 O -0.410 6.410 16 C 0.207 3.793 17 C -0.550 4.550 18 H 0.058 0.942 19 C 0.007 3.993 20 N -0.929 5.929 21 Si 0.983 3.017 22 H -0.266 1.266 23 H -0.270 1.270 24 H -0.270 1.270 25 O -0.400 6.400 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.057 0.943 41 H -0.007 1.007 42 H -0.010 1.010 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 -4.177 27.750 28.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.005 3.995 3 H 0.081 0.919 4 C -0.182 4.182 5 C -0.186 4.186 6 C 0.020 3.980 7 H 0.113 0.887 8 C -0.147 4.147 9 C -0.144 4.144 10 C 0.305 3.695 11 O -0.432 6.432 12 O -0.278 6.278 13 C 0.004 3.996 14 C -0.024 4.024 15 O -0.331 6.331 16 C 0.133 3.867 17 C -0.588 4.588 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.806 3.194 22 H -0.191 1.191 23 H -0.195 1.195 24 H -0.195 1.195 25 O -0.320 6.320 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.146 0.854 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.127 0.873 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.011 0.989 42 H 0.008 0.992 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.023 -3.936 27.601 27.953 hybrid contribution 0.077 0.380 -0.842 0.927 sum -1.946 -3.557 26.759 27.064 Atomic orbital electron populations 1.21890 0.93154 1.02894 1.02742 1.23153 0.95464 0.95578 0.85297 0.91858 1.23307 0.95815 1.01130 0.97958 1.23178 0.98072 1.03807 0.93566 1.22864 0.84105 0.96542 0.94446 0.88722 1.21798 0.98978 1.02100 0.91853 1.21475 0.93990 1.04877 0.94060 1.24491 0.88404 0.75694 0.80957 1.90606 1.39512 1.40965 1.72107 1.86611 1.46296 1.73029 1.21908 1.23174 0.86924 1.00019 0.89526 1.22655 0.90903 0.96947 0.91855 1.87866 1.49321 1.69438 1.26440 1.19885 0.95398 0.94790 0.76674 1.21408 1.13626 1.28432 0.95327 0.92325 1.25948 1.00697 0.96666 0.95834 1.70063 1.41920 1.40352 1.04478 0.85134 0.77757 0.78223 0.78275 1.19065 1.19495 1.19467 1.88460 1.42673 1.65176 1.35699 0.91910 0.93054 0.89486 0.88483 0.89524 0.88083 0.90295 0.92250 0.89220 0.85400 0.87554 0.91351 0.87255 0.90004 0.92471 0.98932 0.99212 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.62 71.98 0.69 -1.33 16 2 C 0.06 0.97 4.07 31.26 0.13 1.10 16 3 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 4 C -0.14 -1.48 6.57 32.05 0.21 -1.27 16 5 C -0.15 -1.63 6.55 31.86 0.21 -1.42 16 6 C 0.08 1.22 3.52 31.06 0.11 1.33 16 7 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 8 C -0.11 -2.07 4.07 30.59 0.12 -1.95 16 9 C -0.11 -2.37 5.72 29.85 0.17 -2.20 16 10 C 0.46 13.81 7.96 71.24 0.57 14.38 16 11 O -0.54 -18.07 15.73 21.97 0.35 -17.72 16 12 O -0.36 -12.55 10.19 -48.76 -0.50 -13.05 16 13 C 0.08 2.51 5.84 71.98 0.42 2.93 16 14 C 0.05 2.00 6.33 71.98 0.46 2.45 16 15 O -0.41 -20.83 10.30 -145.57 -1.50 -22.33 16 16 C 0.21 11.86 5.69 71.24 0.41 12.26 16 17 C -0.55 -33.57 9.43 25.60 0.24 -33.33 16 18 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 19 C 0.01 0.42 5.46 84.65 0.46 0.88 16 20 N -0.93 -56.13 13.29 21.44 0.28 -55.85 16 21 Si 0.98 45.04 29.54 68.60 2.03 47.07 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 O -0.40 -8.31 10.32 -148.98 -1.54 -9.85 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.77 8.06 -2.39 -0.02 0.75 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.89 7.85 -2.39 -0.02 0.87 16 33 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 34 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 35 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.11 2.57 7.88 -2.39 -0.02 2.56 16 37 H 0.07 2.32 8.13 -2.39 -0.02 2.30 16 38 H 0.11 2.84 8.13 -2.39 -0.02 2.82 16 39 H 0.08 2.73 8.14 -2.39 -0.02 2.72 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H -0.01 -0.59 8.14 -2.39 -0.02 -0.60 16 43 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -73.56 361.60 4.28 -69.28 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.96 Total: 8.60 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 4.20 Total: -6.16 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.28 Total: -55.85 kcal Atomic # 8 Polarization: -59.76 SS G_CDS: -3.19 Total: -62.94 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -73.56 4.28 -69.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815213799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.274 kcal (2) G-P(sol) polarization free energy of solvation -73.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds