Wall clock time and date at job start Tue Mar 31 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99988 * 2 1 4 4 C 1.50700 * 109.46795 * 298.74550 * 3 2 1 5 5 O 1.20826 * 120.00183 * 144.30285 * 4 3 2 6 6 O 1.34227 * 120.00213 * 324.30373 * 4 3 2 7 7 C 1.45202 * 116.99991 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.46848 * 179.97438 * 7 6 4 9 9 O 1.42901 * 109.46888 * 65.00354 * 8 7 6 10 10 C 1.42904 * 113.99784 * 180.02562 * 9 8 7 11 11 C 1.50694 * 109.47155 * 179.97438 * 10 9 8 12 12 H 1.08010 * 120.00178 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00242 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00178 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00315 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46820 * 359.97438 * 15 13 11 17 17 H 1.48490 * 109.47238 * 120.00138 * 15 13 11 18 18 H 1.48506 * 109.47033 * 240.00015 * 15 13 11 19 19 C 1.53003 * 109.47124 * 178.74756 * 3 2 1 20 20 C 1.53001 * 109.46717 * 299.99468 * 19 3 2 21 21 C 1.52995 * 109.47581 * 300.00340 * 20 19 3 22 22 C 1.52999 * 109.47035 * 60.00046 * 21 20 19 23 23 C 1.52995 * 109.47048 * 58.74493 * 3 2 1 24 24 H 1.08994 * 109.47211 * 294.68208 * 1 2 3 25 25 H 1.08999 * 109.47246 * 54.68512 * 1 2 3 26 26 H 1.09004 * 109.47239 * 174.68217 * 1 2 3 27 27 H 1.08998 * 109.46873 * 299.99793 * 7 6 4 28 28 H 1.08996 * 109.47292 * 60.00357 * 7 6 4 29 29 H 1.08998 * 109.47143 * 184.99834 * 8 7 6 30 30 H 1.08998 * 109.47262 * 305.00183 * 8 7 6 31 31 H 1.08998 * 109.46900 * 299.99713 * 10 9 8 32 32 H 1.09001 * 109.47111 * 59.99552 * 10 9 8 33 33 H 0.97001 * 120.00541 * 180.02562 * 14 13 11 34 34 H 1.08993 * 109.47269 * 60.00107 * 19 3 2 35 35 H 1.09000 * 109.46745 * 180.02562 * 19 3 2 36 36 H 1.09003 * 109.46396 * 180.02562 * 20 19 3 37 37 H 1.09000 * 109.46992 * 60.00789 * 20 19 3 38 38 H 1.09006 * 109.46721 * 299.99924 * 21 20 19 39 39 H 1.08998 * 109.47025 * 180.02562 * 21 20 19 40 40 H 1.09004 * 109.46787 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47187 * 60.00387 * 22 21 20 42 42 H 1.09000 * 109.47324 * 180.02562 * 23 3 2 43 43 H 1.09000 * 109.47261 * 299.99883 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5903 2.0423 -1.2457 5 8 1.3832 3.2319 -1.2032 6 8 1.4462 1.3770 -2.4026 7 6 1.0399 2.1509 -3.5620 8 6 0.9298 1.2286 -4.7778 9 8 -0.1220 0.2847 -4.5659 10 6 -0.3093 -0.6294 -5.6482 11 6 -1.4365 -1.5738 -5.3187 12 1 -1.9575 -1.4851 -4.3767 13 6 -1.8028 -2.5511 -6.2196 14 7 -1.1689 -2.6588 -7.3668 15 14 -3.1996 -3.7222 -5.8109 16 1 -3.7442 -3.3937 -4.4690 17 1 -4.2729 -3.5867 -6.8280 18 1 -2.6915 -5.1176 -5.8104 19 6 3.5351 1.1848 0.0315 20 6 3.9614 0.4368 1.2963 21 6 3.4851 1.2071 2.5294 22 6 1.9602 1.3277 2.4978 23 6 1.5339 2.0758 1.2331 24 1 -0.3633 0.4291 0.9337 25 1 -0.3634 0.5940 -0.8385 26 1 -0.3634 -1.0233 -0.0952 27 1 0.0726 2.6146 -3.3684 28 1 1.7810 2.9253 -3.7598 29 1 0.7118 1.8222 -5.6656 30 1 1.8715 0.6979 -4.9178 31 1 -0.5528 -0.0747 -6.5543 32 1 0.6068 -1.1986 -5.8058 33 1 -1.4268 -3.3461 -8.0009 34 1 3.8744 0.6361 -0.8470 35 1 3.9784 2.1806 0.0320 36 1 5.0478 0.3513 1.3190 37 1 3.5181 -0.5590 1.2963 38 1 3.9285 2.2029 2.5294 39 1 3.7892 0.6744 3.4304 40 1 1.6210 1.8769 3.3762 41 1 1.5169 0.3320 2.4979 42 1 1.9769 3.0717 1.2329 43 1 0.4475 2.1618 1.2106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815233233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:23 Heat of formation + Delta-G solvation = -196.759537 kcal Electronic energy + Delta-G solvation = -23784.467069 eV Core-core repulsion = 20215.518923 eV Total energy + Delta-G solvation = -3568.948146 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.166 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09123 -38.98431 -37.03576 -36.24565 -35.85027 -32.77387 -31.35449 -30.70678 -29.92714 -26.95747 -26.58604 -24.49572 -22.95193 -22.44395 -22.03685 -20.85286 -19.71644 -17.95482 -17.03413 -16.67522 -16.35911 -16.06342 -15.64528 -15.28144 -14.92365 -14.61091 -14.39266 -14.13387 -13.79188 -13.68671 -13.17204 -12.97316 -12.74771 -12.65817 -12.44717 -12.26348 -11.94259 -11.51954 -11.42049 -11.32098 -11.10115 -10.89798 -10.87471 -10.78989 -10.72501 -10.59806 -10.39659 -10.14097 -10.05634 -9.59580 -9.11916 -8.88103 -8.21608 -6.12250 -4.13811 2.12469 2.65249 3.28645 3.35048 3.41309 3.59937 4.31216 4.33141 4.41571 4.54776 4.72173 4.84671 4.90050 4.95155 5.11836 5.20783 5.24289 5.24512 5.30706 5.37026 5.42775 5.47412 5.53808 5.62871 5.75501 5.83675 5.85234 5.87770 5.90930 5.94351 5.97759 6.00629 6.08523 6.22828 6.54474 6.93766 7.05488 7.39909 7.77395 7.80064 8.12270 8.52115 8.98754 9.50953 10.99418 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.003703 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.151046 B = 7559.900013 C = 8209.496858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.350 6.350 3 C 0.135 3.865 4 C 0.438 3.562 5 O -0.512 6.512 6 O -0.327 6.327 7 C 0.069 3.931 8 C 0.063 3.937 9 O -0.390 6.390 10 C 0.194 3.806 11 C -0.513 4.513 12 H 0.067 0.933 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.908 3.092 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.105 4.105 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.114 4.114 23 C -0.134 4.134 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.264 0.736 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.496 8.993 17.789 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.268 6.268 3 C 0.093 3.907 4 C 0.281 3.719 5 O -0.401 6.401 6 O -0.241 6.241 7 C -0.004 4.004 8 C -0.015 4.015 9 O -0.310 6.310 10 C 0.120 3.880 11 C -0.551 4.551 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.735 3.265 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.143 4.143 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.172 4.172 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.023 0.977 32 H 0.025 0.975 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.413 9.052 17.748 22.035 hybrid contribution -0.869 -0.190 -0.503 1.022 sum 8.544 8.862 17.246 21.189 Atomic orbital electron populations 1.22932 0.80226 1.04194 1.00006 1.88038 1.20403 1.24087 1.94287 1.21460 0.96350 0.84227 0.88620 1.24680 0.73965 0.86984 0.86311 1.90633 1.46692 1.16527 1.86235 1.86719 1.77588 1.42257 1.17583 1.23258 1.00528 0.93555 0.83107 1.22300 0.93157 0.92280 0.93745 1.87910 1.51558 1.46072 1.45489 1.20238 0.96576 0.86850 0.84306 1.21073 1.16309 1.13883 1.03879 0.91496 1.24946 0.97268 0.97521 0.94761 1.69967 1.41300 1.34306 1.08212 0.86283 0.81395 0.80291 0.78541 1.19477 1.20851 1.20785 1.21563 0.89804 1.02231 1.00662 1.21458 1.00651 1.00076 0.92927 1.21571 0.95589 1.00527 0.98157 1.21475 0.96307 1.01145 0.96258 1.22019 1.02086 0.99891 0.93186 0.93833 0.93274 0.88409 0.90634 0.90484 0.92003 0.93148 0.97663 0.97478 0.92684 0.89839 0.90087 0.91397 0.90391 0.92007 0.91641 0.91481 0.90933 0.89643 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.17 101.05 1.03 1.33 16 2 O -0.35 -4.94 8.81 -48.88 -0.43 -5.37 16 3 C 0.13 1.73 0.67 -91.77 -0.06 1.67 16 4 C 0.44 6.88 5.52 36.01 0.20 7.08 16 5 O -0.51 -8.63 15.83 -18.75 -0.30 -8.93 16 6 O -0.33 -5.76 9.48 -45.92 -0.44 -6.20 16 7 C 0.07 1.14 5.84 37.16 0.22 1.36 16 8 C 0.06 1.18 6.33 37.16 0.24 1.41 16 9 O -0.39 -9.57 10.30 -38.80 -0.40 -9.97 16 10 C 0.19 5.36 5.69 36.00 0.20 5.56 16 11 C -0.51 -15.18 9.43 -34.44 -0.32 -15.50 16 12 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 15 Si 0.91 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.11 -1.12 4.93 -26.73 -0.13 -1.25 16 20 C -0.11 -1.00 5.78 -26.73 -0.15 -1.15 16 21 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 22 C -0.11 -0.98 5.78 -26.73 -0.15 -1.14 16 23 C -0.13 -1.44 3.84 -26.73 -0.10 -1.54 16 24 H 0.04 0.47 6.69 -51.93 -0.35 0.13 16 25 H 0.05 0.76 6.71 -51.93 -0.35 0.41 16 26 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 28 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.77 7.68 -51.93 -0.40 0.37 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 42 H 0.08 0.90 7.87 -51.93 -0.41 0.50 16 43 H 0.07 0.80 6.65 -51.93 -0.35 0.46 16 LS Contribution 349.15 15.07 5.26 5.26 Total: -1.00 -32.91 349.15 -7.17 -40.09 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -7.29 Total: -3.81 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 0.70 Total: -1.74 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.15 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -1.56 Total: -30.46 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.91 -7.17 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815233233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.673 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds