Wall clock time and date at job start Tue Mar 31 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99988 * 2 1 4 4 C 1.50700 * 109.46795 * 298.74550 * 3 2 1 5 5 O 1.20826 * 120.00183 * 144.30285 * 4 3 2 6 6 O 1.34227 * 120.00213 * 324.30373 * 4 3 2 7 7 C 1.45202 * 116.99991 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.46848 * 179.97438 * 7 6 4 9 9 O 1.42901 * 109.46888 * 65.00354 * 8 7 6 10 10 C 1.42904 * 113.99784 * 180.02562 * 9 8 7 11 11 C 1.50694 * 109.47155 * 179.97438 * 10 9 8 12 12 H 1.08010 * 120.00178 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00242 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00178 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00315 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46820 * 359.97438 * 15 13 11 17 17 H 1.48490 * 109.47238 * 120.00138 * 15 13 11 18 18 H 1.48506 * 109.47033 * 240.00015 * 15 13 11 19 19 C 1.53003 * 109.47124 * 178.74756 * 3 2 1 20 20 C 1.53001 * 109.46717 * 299.99468 * 19 3 2 21 21 C 1.52995 * 109.47581 * 300.00340 * 20 19 3 22 22 C 1.52999 * 109.47035 * 60.00046 * 21 20 19 23 23 C 1.52995 * 109.47048 * 58.74493 * 3 2 1 24 24 H 1.08994 * 109.47211 * 294.68208 * 1 2 3 25 25 H 1.08999 * 109.47246 * 54.68512 * 1 2 3 26 26 H 1.09004 * 109.47239 * 174.68217 * 1 2 3 27 27 H 1.08998 * 109.46873 * 299.99793 * 7 6 4 28 28 H 1.08996 * 109.47292 * 60.00357 * 7 6 4 29 29 H 1.08998 * 109.47143 * 184.99834 * 8 7 6 30 30 H 1.08998 * 109.47262 * 305.00183 * 8 7 6 31 31 H 1.08998 * 109.46900 * 299.99713 * 10 9 8 32 32 H 1.09001 * 109.47111 * 59.99552 * 10 9 8 33 33 H 0.97001 * 120.00541 * 180.02562 * 14 13 11 34 34 H 1.08993 * 109.47269 * 60.00107 * 19 3 2 35 35 H 1.09000 * 109.46745 * 180.02562 * 19 3 2 36 36 H 1.09003 * 109.46396 * 180.02562 * 20 19 3 37 37 H 1.09000 * 109.46992 * 60.00789 * 20 19 3 38 38 H 1.09006 * 109.46721 * 299.99924 * 21 20 19 39 39 H 1.08998 * 109.47025 * 180.02562 * 21 20 19 40 40 H 1.09004 * 109.46787 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47187 * 60.00387 * 22 21 20 42 42 H 1.09000 * 109.47324 * 180.02562 * 23 3 2 43 43 H 1.09000 * 109.47261 * 299.99883 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5903 2.0423 -1.2457 5 8 1.3832 3.2319 -1.2032 6 8 1.4462 1.3770 -2.4026 7 6 1.0399 2.1509 -3.5620 8 6 0.9298 1.2286 -4.7778 9 8 -0.1220 0.2847 -4.5659 10 6 -0.3093 -0.6294 -5.6482 11 6 -1.4365 -1.5738 -5.3187 12 1 -1.9575 -1.4851 -4.3767 13 6 -1.8028 -2.5511 -6.2196 14 7 -1.1689 -2.6588 -7.3668 15 14 -3.1996 -3.7222 -5.8109 16 1 -3.7442 -3.3937 -4.4690 17 1 -4.2729 -3.5867 -6.8280 18 1 -2.6915 -5.1176 -5.8104 19 6 3.5351 1.1848 0.0315 20 6 3.9614 0.4368 1.2963 21 6 3.4851 1.2071 2.5294 22 6 1.9602 1.3277 2.4978 23 6 1.5339 2.0758 1.2331 24 1 -0.3633 0.4291 0.9337 25 1 -0.3634 0.5940 -0.8385 26 1 -0.3634 -1.0233 -0.0952 27 1 0.0726 2.6146 -3.3684 28 1 1.7810 2.9253 -3.7598 29 1 0.7118 1.8222 -5.6656 30 1 1.8715 0.6979 -4.9178 31 1 -0.5528 -0.0747 -6.5543 32 1 0.6068 -1.1986 -5.8058 33 1 -1.4268 -3.3461 -8.0009 34 1 3.8744 0.6361 -0.8470 35 1 3.9784 2.1806 0.0320 36 1 5.0478 0.3513 1.3190 37 1 3.5181 -0.5590 1.2963 38 1 3.9285 2.2029 2.5294 39 1 3.7892 0.6744 3.4304 40 1 1.6210 1.8769 3.3762 41 1 1.5169 0.3320 2.4979 42 1 1.9769 3.0717 1.2329 43 1 0.4475 2.1618 1.2106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815233233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:22 Heat of formation + Delta-G solvation = -216.683921 kcal Electronic energy + Delta-G solvation = -23785.331055 eV Core-core repulsion = 20215.518923 eV Total energy + Delta-G solvation = -3569.812132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.166 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.23803 -40.08496 -38.73369 -37.60813 -36.87411 -34.96388 -32.26784 -31.75674 -31.23589 -29.06146 -27.63582 -25.61163 -24.55879 -23.74916 -23.42361 -21.89911 -20.62143 -19.13532 -18.73220 -18.09186 -18.03113 -17.29437 -16.99344 -16.55648 -16.36988 -16.26293 -15.72163 -15.54316 -14.94659 -14.51763 -14.46699 -14.34028 -13.91681 -13.79280 -13.57431 -13.30670 -13.23640 -13.15344 -12.92213 -12.73621 -12.59425 -12.40237 -12.11839 -12.08094 -11.95997 -11.80767 -11.50410 -11.37455 -11.29269 -11.03486 -10.92164 -10.65893 -10.29963 -8.33735 -6.45992 0.89489 1.39527 1.40997 1.47480 1.55527 2.33375 2.59166 3.00304 3.01353 3.31980 3.54964 3.59349 3.85393 4.02018 4.07114 4.14998 4.18346 4.28713 4.34112 4.37423 4.41792 4.44615 4.49148 4.58388 4.60194 4.72306 4.81959 4.82269 4.96238 4.99408 5.14545 5.19184 5.22225 5.24084 5.30637 5.34055 5.52769 5.55755 5.88309 5.93074 6.46549 6.55764 6.77099 7.25605 8.78830 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.003703 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.151046 B = 7559.900013 C = 8209.496858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.361 6.361 3 C 0.132 3.868 4 C 0.436 3.564 5 O -0.526 6.526 6 O -0.348 6.348 7 C 0.072 3.928 8 C 0.055 3.945 9 O -0.408 6.408 10 C 0.209 3.791 11 C -0.549 4.549 12 H 0.060 0.940 13 C 0.008 3.992 14 N -0.929 5.929 15 Si 0.983 3.017 16 H -0.265 1.265 17 H -0.270 1.270 18 H -0.271 1.271 19 C -0.106 4.106 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.111 4.111 23 C -0.131 4.131 24 H 0.069 0.931 25 H 0.021 0.979 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.055 0.945 31 H -0.008 1.008 32 H -0.012 1.012 33 H 0.271 0.729 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.628 8.958 19.448 23.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.280 6.280 3 C 0.090 3.910 4 C 0.280 3.720 5 O -0.416 6.416 6 O -0.264 6.264 7 C -0.001 4.001 8 C -0.022 4.022 9 O -0.329 6.329 10 C 0.134 3.866 11 C -0.586 4.586 12 H 0.078 0.922 13 C -0.191 4.191 14 N -0.569 5.569 15 Si 0.805 3.195 16 H -0.189 1.189 17 H -0.195 1.195 18 H -0.196 1.196 19 C -0.144 4.144 20 C -0.148 4.148 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.168 4.168 24 H 0.088 0.912 25 H 0.040 0.960 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.127 0.873 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.010 0.990 32 H 0.006 0.994 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.563 9.036 19.413 23.451 hybrid contribution -0.844 -0.104 -1.044 1.347 sum 8.719 8.932 18.369 22.208 Atomic orbital electron populations 1.22950 0.80169 1.04047 1.00183 1.88021 1.20612 1.25095 1.94260 1.21790 0.97635 0.83674 0.87879 1.25373 0.73199 0.87047 0.86395 1.90611 1.47445 1.17174 1.86381 1.86717 1.77889 1.43287 1.18511 1.23247 1.01369 0.93269 0.82210 1.22618 0.91727 0.91819 0.96000 1.87860 1.53721 1.46694 1.44577 1.19872 0.95241 0.86909 0.84601 1.21391 1.17543 1.15484 1.04212 0.92187 1.25944 0.99911 0.98957 0.94279 1.70063 1.42654 1.35057 1.09087 0.85143 0.77808 0.77807 0.78696 1.18876 1.19545 1.19577 1.21656 0.88202 1.03155 1.01371 1.21460 1.01689 0.99183 0.92439 1.21583 0.94767 1.01135 0.98098 1.21493 0.97108 1.00648 0.95598 1.22047 1.01682 1.00002 0.93104 0.91231 0.95994 0.88243 0.91140 0.87318 0.89905 0.92713 0.99007 0.99444 0.91972 0.91045 0.88788 0.89603 0.91718 0.90974 0.90012 0.89618 0.91614 0.89351 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 10.17 113.37 1.15 1.76 16 2 O -0.36 -10.22 8.81 -135.93 -1.20 -11.41 16 3 C 0.13 3.30 0.67 -11.54 -0.01 3.30 16 4 C 0.44 13.70 5.52 71.24 0.39 14.09 16 5 O -0.53 -17.56 15.83 21.96 0.35 -17.21 16 6 O -0.35 -12.47 9.48 -45.01 -0.43 -12.89 16 7 C 0.07 2.38 5.84 71.98 0.42 2.80 16 8 C 0.06 2.08 6.33 71.98 0.46 2.54 16 9 O -0.41 -20.58 10.30 -145.57 -1.50 -22.08 16 10 C 0.21 11.87 5.69 71.23 0.41 12.28 16 11 C -0.55 -33.13 9.43 25.60 0.24 -32.89 16 12 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 13 C 0.01 0.45 5.46 84.65 0.46 0.91 16 14 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 15 Si 0.98 44.56 29.54 68.60 2.03 46.59 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 C -0.11 -2.16 4.93 30.60 0.15 -2.01 16 20 C -0.11 -1.73 5.78 30.59 0.18 -1.56 16 21 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 22 C -0.11 -1.65 5.78 30.59 0.18 -1.48 16 23 C -0.13 -2.63 3.84 30.59 0.12 -2.51 16 24 H 0.07 1.47 6.69 -2.39 -0.02 1.46 16 25 H 0.02 0.70 6.71 -2.39 -0.02 0.68 16 26 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 27 H 0.07 2.37 8.13 -2.39 -0.02 2.35 16 28 H 0.11 2.87 8.13 -2.39 -0.02 2.85 16 29 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 31 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 32 H -0.01 -0.73 8.14 -2.39 -0.02 -0.74 16 33 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.20 7.68 -2.39 -0.02 1.18 16 38 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.07 1.09 7.68 -2.39 -0.02 1.07 16 42 H 0.09 1.73 7.87 -2.39 -0.02 1.71 16 43 H 0.07 1.39 6.65 -2.39 -0.02 1.38 16 Total: -1.00 -71.14 349.15 4.83 -66.31 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.97 Total: 10.44 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 4.33 Total: -4.08 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.28 Total: -55.67 kcal Atomic # 8 Polarization: -60.82 SS G_CDS: -2.78 Total: -63.60 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -71.14 4.83 -66.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815233233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.376 kcal (2) G-P(sol) polarization free energy of solvation -71.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds