Wall clock time and date at job start Tue Mar 31 2020 05:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00066 * 2 1 4 4 H 1.48492 * 109.47145 * 239.99921 * 3 2 1 5 5 H 1.48503 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47017 * 119.99458 * 3 2 1 7 7 C 1.37879 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00060 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46915 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.46983 * 179.97438 * 10 9 7 12 12 C 1.34235 * 116.99834 * 180.02562 * 11 10 9 13 13 O 1.20817 * 119.99850 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99597 * 179.97438 * 12 11 10 15 15 C 1.53003 * 109.46858 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47024 * 180.02562 * 15 14 12 17 17 O 1.42896 * 109.46947 * 179.97438 * 16 15 14 18 18 C 1.42899 * 114.00352 * 180.02562 * 17 16 15 19 19 C 1.53175 * 109.54545 * 269.56219 * 18 17 16 20 20 C 1.53094 * 109.16661 * 183.14980 * 19 18 17 21 21 O 1.42898 * 109.41211 * 57.60371 * 20 19 18 22 22 C 1.42897 * 114.10001 * 298.84343 * 21 20 19 23 23 C 1.53089 * 109.41656 * 61.16248 * 22 21 20 24 24 H 0.96998 * 120.00048 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47234 * 59.99731 * 9 7 2 26 26 H 1.09004 * 109.47132 * 299.99870 * 9 7 2 27 27 H 1.09003 * 109.47088 * 60.00010 * 10 9 7 28 28 H 1.08997 * 109.47062 * 300.00165 * 10 9 7 29 29 H 1.09000 * 109.47009 * 60.00150 * 14 12 11 30 30 H 1.08994 * 109.47480 * 299.99592 * 14 12 11 31 31 H 1.09000 * 109.46988 * 60.00382 * 15 14 12 32 32 H 1.09001 * 109.47299 * 300.00044 * 15 14 12 33 33 H 1.09000 * 109.47001 * 60.00298 * 16 15 14 34 34 H 1.09001 * 109.47043 * 300.00109 * 16 15 14 35 35 H 1.09004 * 109.61153 * 29.77680 * 18 17 16 36 36 H 1.09004 * 109.52259 * 303.05246 * 19 18 17 37 37 H 1.09006 * 109.52330 * 63.24079 * 19 18 17 38 38 H 1.09006 * 109.47665 * 297.62062 * 20 19 18 39 39 H 1.08993 * 109.47955 * 177.58818 * 20 19 18 40 40 H 1.09002 * 109.48425 * 301.17758 * 22 21 20 41 41 H 1.09001 * 109.49443 * 181.15303 * 22 21 20 42 42 H 1.08997 * 109.52675 * 182.48845 * 23 22 21 43 43 H 1.08995 * 109.52428 * 62.29514 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5193 -4.9195 0.0011 12 6 2.2504 -6.0453 0.0018 13 8 3.4570 -5.9820 0.0013 14 6 1.5662 -7.3880 0.0030 15 6 2.6200 -8.4973 0.0029 16 6 1.9253 -9.8606 0.0035 17 8 2.9095 -10.8966 0.0027 18 6 2.3634 -12.2171 0.0026 19 6 2.1784 -12.6953 1.4460 20 6 1.6675 -14.1384 1.4359 21 8 2.5903 -14.9639 0.7224 22 6 2.7673 -14.5931 -0.6463 23 6 3.3224 -13.1683 -0.7198 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 0.9432 -7.4791 -0.8867 30 1 0.9438 -7.4779 0.8932 31 1 3.2433 -8.4064 0.8924 32 1 3.2421 -8.4074 -0.8876 33 1 1.3022 -9.9512 -0.8863 34 1 1.3029 -9.9508 0.8937 35 1 1.3998 -12.2145 -0.5068 36 1 3.1334 -12.6507 1.9697 37 1 1.4545 -12.0561 1.9516 38 1 0.6936 -14.1758 0.9478 39 1 1.5749 -14.4984 2.4605 40 1 1.8078 -14.6364 -1.1617 41 1 3.4666 -15.2807 -1.1219 42 1 3.4166 -12.8674 -1.7631 43 1 4.3004 -13.1332 -0.2399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869938290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:59 Heat of formation + Delta-G solvation = -210.070754 kcal Electronic energy + Delta-G solvation = -21728.167372 eV Core-core repulsion = 18158.642009 eV Total energy + Delta-G solvation = -3569.525364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.166 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11060 -39.92400 -37.96707 -36.26423 -34.20638 -33.35208 -32.43082 -31.61444 -30.32383 -27.61873 -25.07588 -24.54424 -24.07214 -22.42234 -21.06291 -20.76158 -20.17206 -17.57871 -17.29015 -16.70169 -16.52554 -16.41470 -16.08555 -15.79679 -15.53106 -15.29177 -14.62942 -14.51016 -14.39355 -13.70853 -13.58320 -12.93101 -12.68928 -12.63443 -12.48821 -12.24480 -11.89116 -11.81494 -11.62952 -11.23637 -11.20097 -11.05474 -11.02999 -10.81374 -10.74304 -10.70889 -10.23594 -10.14976 -9.82932 -9.65077 -9.61954 -9.32218 -8.45137 -6.11397 -4.15880 2.56829 2.91980 3.29480 3.32935 3.34238 3.38390 3.49987 4.25870 4.30793 4.38350 4.47645 4.58983 4.70053 4.71998 4.73626 4.84755 4.91920 5.00814 5.14955 5.17063 5.18919 5.24652 5.25009 5.32780 5.36166 5.50435 5.53821 5.65906 5.74558 5.89101 6.06433 6.08600 6.10140 6.62870 6.69236 6.88806 7.00765 7.54610 7.60904 7.85639 8.17976 8.25909 8.89441 9.48487 11.00025 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.066345 B = 0.001867 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.934497 B =14995.639100 C =15162.703422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.359 6.359 12 C 0.455 3.545 13 O -0.518 6.518 14 C -0.112 4.112 15 C -0.108 4.108 16 C 0.063 3.937 17 O -0.377 6.377 18 C 0.089 3.911 19 C -0.180 4.180 20 C 0.063 3.937 21 O -0.383 6.383 22 C 0.064 3.936 23 C -0.155 4.155 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.098 0.902 40 H 0.052 0.948 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.671 -29.084 -0.145 29.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.002 3.998 11 O -0.275 6.275 12 C 0.298 3.702 13 O -0.407 6.407 14 C -0.150 4.150 15 C -0.145 4.145 16 C -0.014 4.014 17 O -0.296 6.296 18 C 0.031 3.969 19 C -0.218 4.218 20 C -0.014 4.014 21 O -0.301 6.301 22 C -0.013 4.013 23 C -0.193 4.193 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.157 -28.999 -0.062 29.022 hybrid contribution 0.098 1.323 -0.097 1.330 sum 1.255 -27.676 -0.159 27.705 Atomic orbital electron populations 1.69964 1.06084 1.27102 1.49704 1.24988 0.94933 0.99395 0.94847 0.86521 0.79474 0.82438 0.78792 1.20064 1.21109 1.20066 1.20950 0.93161 0.90150 1.52312 0.92299 1.19169 0.94191 0.89061 0.98853 1.23640 0.96361 0.78825 1.00948 1.86520 1.42486 1.15903 1.82575 1.23428 0.86579 0.87378 0.72848 1.90639 1.15888 1.88370 1.45823 1.21204 0.99175 0.88774 1.05877 1.21281 0.97729 0.90303 1.05234 1.22537 0.91019 0.87480 1.00318 1.87946 1.33174 1.13495 1.95008 1.22073 0.96643 0.83129 0.95034 1.22754 1.03607 0.97300 0.98163 1.22567 0.91712 0.89516 0.97555 1.87949 1.64271 1.54881 1.23028 1.22588 1.00545 0.94973 0.83202 1.22308 1.00584 0.94476 1.01886 0.92653 0.95367 0.95357 0.92326 0.92316 0.87727 0.87725 0.90081 0.90086 0.93002 0.93056 0.92028 0.89939 0.90526 0.93054 0.88430 0.92991 0.88207 0.90046 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.07 1.68 5.40 37.16 0.20 1.88 16 11 O -0.36 -7.12 10.22 -39.27 -0.40 -7.52 16 12 C 0.45 7.72 7.96 36.01 0.29 8.01 16 13 O -0.52 -10.24 15.73 -18.74 -0.29 -10.53 16 14 C -0.11 -1.25 5.81 -27.88 -0.16 -1.42 16 15 C -0.11 -1.17 4.87 -26.73 -0.13 -1.30 16 16 C 0.06 0.55 5.76 37.16 0.21 0.76 16 17 O -0.38 -3.85 10.00 -35.23 -0.35 -4.20 16 18 C 0.09 0.69 2.70 -26.55 -0.07 0.62 16 19 C -0.18 -1.27 5.76 -26.59 -0.15 -1.42 16 20 C 0.06 0.40 6.84 37.21 0.25 0.65 16 21 O -0.38 -3.13 10.76 -35.23 -0.38 -3.51 16 22 C 0.06 0.39 6.84 37.20 0.25 0.64 16 23 C -0.15 -1.09 5.79 -26.59 -0.15 -1.24 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.31 8.13 -51.93 -0.42 0.88 16 28 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 29 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 32 H 0.08 0.98 8.10 -51.93 -0.42 0.55 16 33 H 0.05 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.05 0.38 8.00 -51.93 -0.42 -0.04 16 35 H 0.06 0.40 7.79 -51.93 -0.40 0.00 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.48 8.00 -51.93 -0.42 0.06 16 38 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -32.75 358.47 -7.86 -40.62 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -7.53 Total: -5.13 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -0.02 Total: -5.93 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.74 Total: -25.63 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -1.43 Total: -25.76 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.75 -7.86 -40.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869938290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.454 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds