Wall clock time and date at job start Tue Mar 31 2020 05:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00066 * 2 1 4 4 H 1.48492 * 109.47145 * 239.99921 * 3 2 1 5 5 H 1.48503 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47017 * 119.99458 * 3 2 1 7 7 C 1.37879 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00060 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46915 * 179.97438 * 9 7 2 11 11 O 1.45201 * 109.46983 * 179.97438 * 10 9 7 12 12 C 1.34235 * 116.99834 * 180.02562 * 11 10 9 13 13 O 1.20817 * 119.99850 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99597 * 179.97438 * 12 11 10 15 15 C 1.53003 * 109.46858 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47024 * 180.02562 * 15 14 12 17 17 O 1.42896 * 109.46947 * 179.97438 * 16 15 14 18 18 C 1.42899 * 114.00352 * 180.02562 * 17 16 15 19 19 C 1.53175 * 109.54545 * 269.56219 * 18 17 16 20 20 C 1.53094 * 109.16661 * 183.14980 * 19 18 17 21 21 O 1.42898 * 109.41211 * 57.60371 * 20 19 18 22 22 C 1.42897 * 114.10001 * 298.84343 * 21 20 19 23 23 C 1.53089 * 109.41656 * 61.16248 * 22 21 20 24 24 H 0.96998 * 120.00048 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47234 * 59.99731 * 9 7 2 26 26 H 1.09004 * 109.47132 * 299.99870 * 9 7 2 27 27 H 1.09003 * 109.47088 * 60.00010 * 10 9 7 28 28 H 1.08997 * 109.47062 * 300.00165 * 10 9 7 29 29 H 1.09000 * 109.47009 * 60.00150 * 14 12 11 30 30 H 1.08994 * 109.47480 * 299.99592 * 14 12 11 31 31 H 1.09000 * 109.46988 * 60.00382 * 15 14 12 32 32 H 1.09001 * 109.47299 * 300.00044 * 15 14 12 33 33 H 1.09000 * 109.47001 * 60.00298 * 16 15 14 34 34 H 1.09001 * 109.47043 * 300.00109 * 16 15 14 35 35 H 1.09004 * 109.61153 * 29.77680 * 18 17 16 36 36 H 1.09004 * 109.52259 * 303.05246 * 19 18 17 37 37 H 1.09006 * 109.52330 * 63.24079 * 19 18 17 38 38 H 1.09006 * 109.47665 * 297.62062 * 20 19 18 39 39 H 1.08993 * 109.47955 * 177.58818 * 20 19 18 40 40 H 1.09002 * 109.48425 * 301.17758 * 22 21 20 41 41 H 1.09001 * 109.49443 * 181.15303 * 22 21 20 42 42 H 1.08997 * 109.52675 * 182.48845 * 23 22 21 43 43 H 1.08995 * 109.52428 * 62.29514 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5193 -4.9195 0.0011 12 6 2.2504 -6.0453 0.0018 13 8 3.4570 -5.9820 0.0013 14 6 1.5662 -7.3880 0.0030 15 6 2.6200 -8.4973 0.0029 16 6 1.9253 -9.8606 0.0035 17 8 2.9095 -10.8966 0.0027 18 6 2.3634 -12.2171 0.0026 19 6 2.1784 -12.6953 1.4460 20 6 1.6675 -14.1384 1.4359 21 8 2.5903 -14.9639 0.7224 22 6 2.7673 -14.5931 -0.6463 23 6 3.3224 -13.1683 -0.7198 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 0.9432 -7.4791 -0.8867 30 1 0.9438 -7.4779 0.8932 31 1 3.2433 -8.4064 0.8924 32 1 3.2421 -8.4074 -0.8876 33 1 1.3022 -9.9512 -0.8863 34 1 1.3029 -9.9508 0.8937 35 1 1.3998 -12.2145 -0.5068 36 1 3.1334 -12.6507 1.9697 37 1 1.4545 -12.0561 1.9516 38 1 0.6936 -14.1758 0.9478 39 1 1.5749 -14.4984 2.4605 40 1 1.8078 -14.6364 -1.1617 41 1 3.4666 -15.2807 -1.1219 42 1 3.4166 -12.8674 -1.7631 43 1 4.3004 -13.1332 -0.2399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869938290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:58 Heat of formation + Delta-G solvation = -230.168328 kcal Electronic energy + Delta-G solvation = -21729.038869 eV Core-core repulsion = 18158.642009 eV Total energy + Delta-G solvation = -3570.396860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.166 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47426 -40.57948 -38.63970 -37.79393 -35.45962 -35.07226 -33.13845 -32.30650 -32.09851 -28.64827 -26.87335 -25.21675 -24.60144 -23.55514 -22.75684 -21.65727 -21.16997 -19.03118 -18.22097 -18.00137 -17.84278 -17.31264 -17.09711 -16.83767 -16.60909 -16.39930 -15.82513 -15.55440 -15.07265 -14.81075 -14.51779 -14.38590 -14.05095 -13.86823 -13.28720 -13.19880 -13.10085 -13.04063 -12.60058 -12.58143 -12.52098 -12.41021 -12.25452 -11.91079 -11.88250 -11.70304 -11.54324 -11.47441 -11.36938 -11.29366 -10.66671 -10.61814 -10.44228 -8.28046 -6.41397 1.19988 1.40183 1.43818 1.51560 1.72619 2.38619 2.62851 2.96570 3.06083 3.63334 3.75084 3.76627 3.93757 3.99386 4.02782 4.11004 4.20404 4.21777 4.26473 4.31648 4.42730 4.45777 4.51685 4.58460 4.60308 4.68849 4.71293 4.76655 4.83494 5.04320 5.05123 5.11941 5.16678 5.24047 5.27327 5.45441 5.56845 5.74329 6.05504 6.22950 6.28590 6.70445 6.76170 7.28277 8.84187 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.066345 B = 0.001867 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.934497 B =14995.639100 C =15162.703422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.089 3.911 11 O -0.366 6.366 12 C 0.450 3.550 13 O -0.549 6.549 14 C -0.100 4.100 15 C -0.103 4.103 16 C 0.065 3.935 17 O -0.403 6.403 18 C 0.084 3.916 19 C -0.178 4.178 20 C 0.061 3.939 21 O -0.406 6.406 22 C 0.063 3.937 23 C -0.154 4.154 24 H 0.268 0.732 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.090 -29.852 -0.382 29.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.591 4.591 8 H 0.082 0.918 9 C -0.007 4.007 10 C 0.016 3.984 11 O -0.282 6.282 12 C 0.296 3.704 13 O -0.440 6.440 14 C -0.137 4.137 15 C -0.141 4.141 16 C -0.011 4.011 17 O -0.323 6.323 18 C 0.026 3.974 19 C -0.216 4.216 20 C -0.015 4.015 21 O -0.325 6.325 22 C -0.013 4.013 23 C -0.192 4.192 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.124 0.876 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.105 0.895 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.576 -29.797 -0.298 29.804 hybrid contribution 0.275 1.475 -0.025 1.501 sum 0.851 -28.321 -0.322 28.336 Atomic orbital electron populations 1.70082 1.07743 1.28361 1.50225 1.25961 0.95876 1.03377 0.94043 0.85379 0.78204 0.77472 0.79265 1.19113 1.20346 1.19141 1.21354 0.93673 0.91357 1.52722 0.91833 1.18983 0.94338 0.90578 0.96779 1.23131 0.95055 0.79397 1.00800 1.86516 1.42667 1.15893 1.83170 1.24640 0.86483 0.88094 0.71224 1.90628 1.17495 1.88655 1.47248 1.21353 0.99159 0.84568 1.08596 1.21205 0.97504 0.91866 1.03521 1.22538 0.90628 0.85733 1.02163 1.87916 1.34497 1.14696 1.95238 1.22253 0.97416 0.82084 0.95632 1.22725 1.02911 0.98199 0.97722 1.22686 0.91991 0.88644 0.98176 1.87920 1.64934 1.55551 1.24081 1.22703 1.01634 0.94374 0.82618 1.22311 0.99691 0.95248 1.01953 0.92292 0.97390 0.97398 0.92444 0.92406 0.84763 0.84832 0.91957 0.91809 0.90980 0.91249 0.90222 0.91929 0.89520 0.91397 0.87621 0.91342 0.87225 0.89453 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.64 5.35 29.85 0.16 1.80 16 10 C 0.09 4.07 5.40 71.98 0.39 4.46 16 11 O -0.37 -14.42 10.22 -51.47 -0.53 -14.94 16 12 C 0.45 14.93 7.96 71.24 0.57 15.50 16 13 O -0.55 -21.79 15.73 21.99 0.35 -21.44 16 14 C -0.10 -1.98 5.81 29.85 0.17 -1.80 16 15 C -0.10 -2.10 4.87 30.60 0.15 -1.95 16 16 C 0.07 0.97 5.76 71.98 0.41 1.39 16 17 O -0.40 -7.73 10.00 -148.98 -1.49 -9.22 16 18 C 0.08 1.16 2.70 30.71 0.08 1.24 16 19 C -0.18 -2.27 5.76 30.68 0.18 -2.09 16 20 C 0.06 0.66 6.84 72.01 0.49 1.16 16 21 O -0.41 -6.15 10.76 -148.98 -1.60 -7.75 16 22 C 0.06 0.67 6.84 72.01 0.49 1.16 16 23 C -0.15 -2.03 5.79 30.68 0.18 -1.85 16 24 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 25 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 27 H 0.06 2.60 8.13 -2.39 -0.02 2.58 16 28 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 29 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 32 H 0.06 1.51 8.10 -2.39 -0.02 1.49 16 33 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 34 H 0.07 0.79 8.00 -2.39 -0.02 0.77 16 35 H 0.08 0.81 7.79 -2.38 -0.02 0.79 16 36 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.09 0.90 8.00 -2.38 -0.02 0.89 16 38 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -71.58 358.47 3.97 -67.61 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 0.96 Total: 6.53 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 3.97 Total: -11.51 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.28 Total: -54.98 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -3.27 Total: -53.36 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -71.58 3.97 -67.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869938290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.558 kcal (2) G-P(sol) polarization free energy of solvation -71.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds