Wall clock time and date at job start Tue Mar 31 2020 05:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47358 * 2 1 4 4 C 1.50703 * 109.46940 * 240.00070 * 2 1 3 5 5 H 1.07998 * 120.00316 * 245.45722 * 4 2 1 6 6 C 1.37880 * 119.99570 * 65.46481 * 4 2 1 7 7 N 1.31510 * 119.99950 * 9.54621 * 6 4 2 8 8 Si 1.86802 * 119.99698 * 189.55088 * 6 4 2 9 9 H 1.48496 * 109.47398 * 84.99179 * 8 6 4 10 10 H 1.48506 * 109.47042 * 204.99006 * 8 6 4 11 11 H 1.48505 * 109.47164 * 324.99052 * 8 6 4 12 12 O 1.45199 * 109.47398 * 120.00488 * 2 1 3 13 13 C 1.34224 * 116.99982 * 270.00180 * 12 2 1 14 14 O 1.20822 * 120.00140 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00167 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.47343 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47314 * 180.02562 * 16 15 13 18 18 O 1.42904 * 109.47135 * 179.97438 * 17 16 15 19 19 C 1.42904 * 113.99951 * 179.97438 * 18 17 16 20 20 C 1.53170 * 109.54310 * 90.44106 * 19 18 17 21 21 C 1.53092 * 109.16254 * 176.84818 * 20 19 18 22 22 O 1.42909 * 109.41411 * 302.39155 * 21 20 19 23 23 C 1.42904 * 114.09359 * 61.16239 * 22 21 20 24 24 C 1.53092 * 109.41237 * 298.83501 * 23 22 21 25 25 H 1.08999 * 109.47114 * 303.66286 * 1 2 3 26 26 H 1.08998 * 109.47422 * 63.66187 * 1 2 3 27 27 H 1.09000 * 109.47223 * 183.66486 * 1 2 3 28 28 H 0.97009 * 119.99693 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47376 * 59.99412 * 15 13 12 30 30 H 1.09003 * 109.47224 * 299.99632 * 15 13 12 31 31 H 1.08995 * 109.47456 * 60.00054 * 16 15 13 32 32 H 1.09008 * 109.47403 * 299.99707 * 16 15 13 33 33 H 1.08997 * 109.47882 * 59.99799 * 17 16 15 34 34 H 1.09003 * 109.47035 * 299.99681 * 17 16 15 35 35 H 1.09004 * 109.61502 * 330.22317 * 19 18 17 36 36 H 1.08998 * 109.52823 * 296.75319 * 20 19 18 37 37 H 1.09009 * 109.52224 * 56.94457 * 20 19 18 38 38 H 1.09004 * 109.48377 * 182.41559 * 21 20 19 39 39 H 1.08995 * 109.48567 * 62.37559 * 21 20 19 40 40 H 1.09007 * 109.47622 * 178.85744 * 23 22 21 41 41 H 1.08992 * 109.49010 * 58.82929 * 23 22 21 42 42 H 1.08993 * 109.52593 * 297.70807 * 24 23 22 43 43 H 1.08999 * 109.51920 * 177.51789 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5785 -1.6370 -1.1340 6 6 1.7945 -0.1772 -2.4796 7 7 1.2991 1.0357 -2.5934 8 14 2.1760 -1.1778 -4.0102 9 1 1.0242 -2.0608 -4.3243 10 1 2.4227 -0.2610 -5.1522 11 1 3.3846 -2.0069 -3.7711 12 8 2.0140 -0.6846 1.1855 13 6 2.2172 0.0638 2.2810 14 8 1.9982 1.2516 2.2504 15 6 2.7183 -0.5775 3.5494 16 6 2.8636 0.4887 4.6370 17 6 3.3730 -0.1623 5.9245 18 8 3.5093 0.8337 6.9402 19 6 3.9812 0.3278 8.1907 20 6 5.5110 0.3957 8.2264 21 6 6.0030 -0.0740 9.5979 22 8 5.4164 0.7384 10.6168 23 6 3.9894 0.6777 10.6619 24 6 3.4165 1.1776 9.3332 25 1 -0.3633 0.5696 0.8553 26 1 -0.3634 0.4559 -0.9209 27 1 -0.3634 -1.0256 0.0657 28 1 1.1322 1.4109 -3.4722 29 1 3.6872 -1.0412 3.3638 30 1 2.0088 -1.3372 3.8773 31 1 1.8950 0.9527 4.8228 32 1 3.5734 1.2482 4.3089 33 1 4.3418 -0.6260 5.7387 34 1 2.6636 -0.9219 6.2529 35 1 3.6592 -0.7065 8.3120 36 1 5.9226 -0.2504 7.4510 37 1 5.8341 1.4227 8.0556 38 1 7.0886 0.0127 9.6440 39 1 5.7144 -1.1139 9.7511 40 1 3.6243 1.3059 11.4745 41 1 3.6743 -0.3523 10.8291 42 1 3.6973 2.2203 9.1847 43 1 2.3301 1.0907 9.3492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870204116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:24 Heat of formation + Delta-G solvation = -205.828603 kcal Electronic energy + Delta-G solvation = -22294.992324 eV Core-core repulsion = 18725.650914 eV Total energy + Delta-G solvation = -3569.341410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.166 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.97582 -39.53121 -37.84855 -35.88191 -33.98567 -33.20687 -32.28267 -31.54317 -29.76978 -27.27679 -25.28910 -24.59317 -24.01422 -22.57581 -21.19256 -20.61363 -19.47412 -17.40604 -16.96587 -16.57703 -16.51323 -16.28652 -16.08976 -15.33786 -15.25884 -15.10172 -14.42673 -14.31365 -14.17931 -13.51775 -13.16325 -12.84391 -12.69746 -12.34623 -12.06736 -11.90568 -11.76459 -11.69007 -11.49040 -11.25747 -11.09700 -10.99992 -10.87142 -10.81856 -10.71521 -10.45687 -10.31637 -10.08368 -9.71688 -9.63904 -9.49826 -8.94737 -8.48616 -6.20597 -4.24550 3.01725 3.15367 3.24808 3.30302 3.33624 3.47178 3.81788 4.33218 4.34216 4.40386 4.55059 4.67658 4.77977 4.89211 4.91819 4.99311 5.06013 5.11699 5.13209 5.23590 5.25539 5.35990 5.40914 5.44673 5.58096 5.61477 5.74503 5.82418 5.90289 6.09675 6.27719 6.59474 6.75469 6.81205 6.85748 7.01273 7.13509 7.55163 7.67660 7.87524 8.12857 8.64483 8.90030 9.39703 10.88745 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.047285 B = 0.002239 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.014879 B =12499.956518 C =12782.947782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.212 3.788 3 H 0.053 0.947 4 C -0.524 4.524 5 H 0.069 0.931 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.909 3.091 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.272 1.272 12 O -0.358 6.358 13 C 0.451 3.549 14 O -0.520 6.520 15 C -0.113 4.113 16 C -0.107 4.107 17 C 0.064 3.936 18 O -0.377 6.377 19 C 0.089 3.911 20 C -0.180 4.180 21 C 0.064 3.936 22 O -0.383 6.383 23 C 0.064 3.936 24 C -0.155 4.155 25 H 0.021 0.979 26 H 0.082 0.918 27 H 0.039 0.961 28 H 0.267 0.733 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.099 0.901 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.673 -4.396 23.891 24.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.160 3.840 3 H 0.071 0.929 4 C -0.562 4.562 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.523 5.523 8 Si 0.736 3.264 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.197 1.197 12 O -0.274 6.274 13 C 0.294 3.706 14 O -0.410 6.410 15 C -0.151 4.151 16 C -0.145 4.145 17 C -0.013 4.013 18 O -0.296 6.296 19 C 0.031 3.969 20 C -0.218 4.218 21 C -0.013 4.013 22 O -0.302 6.302 23 C -0.013 4.013 24 C -0.193 4.193 25 H 0.040 0.960 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.118 0.882 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.597 -3.601 23.770 24.684 hybrid contribution -0.046 -0.786 -1.205 1.439 sum 5.550 -4.387 22.565 23.648 Atomic orbital electron populations 1.22077 0.97960 0.99521 1.01086 1.20633 0.90967 0.94520 0.77923 0.92887 1.20977 1.37232 1.08981 0.89032 0.91322 1.24915 0.95075 0.94803 0.99108 1.69992 1.44027 1.13789 1.24526 0.86340 0.78910 0.79732 0.81455 1.20239 1.21059 1.19670 1.86473 1.75801 1.43727 1.21433 1.23248 0.75098 0.86054 0.86247 1.90613 1.48661 1.16982 1.84785 1.21179 1.03733 0.99229 0.90920 1.21271 1.03793 0.98020 0.91395 1.22558 0.99637 0.90780 0.88318 1.87957 1.86615 1.34819 1.20185 1.22062 0.92915 0.97247 0.84677 1.22752 0.96727 1.04013 0.98341 1.22567 0.98671 0.93752 0.86337 1.87949 1.19752 1.68262 1.54200 1.22587 0.80929 1.00819 0.96953 1.22307 1.01571 1.01620 0.93752 0.96038 0.89956 0.94221 0.92371 0.88148 0.88254 0.90184 0.90106 0.93151 0.93135 0.92100 0.90519 0.89926 0.88468 0.93093 0.88249 0.93029 0.89937 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.42 37.16 0.35 -3.38 16 2 C 0.21 5.74 2.42 -27.88 -0.07 5.67 16 3 H 0.05 1.60 7.10 -51.93 -0.37 1.23 16 4 C -0.52 -14.82 8.82 -34.44 -0.30 -15.12 16 5 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 6 C 0.06 1.77 5.17 -17.82 -0.09 1.68 16 7 N -0.89 -25.61 12.16 55.43 0.67 -24.94 16 8 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 O -0.36 -8.50 9.86 -39.24 -0.39 -8.89 16 13 C 0.45 9.28 7.93 36.01 0.29 9.56 16 14 O -0.52 -12.34 15.20 -18.75 -0.28 -12.63 16 15 C -0.11 -1.55 5.81 -27.88 -0.16 -1.72 16 16 C -0.11 -1.40 4.87 -26.73 -0.13 -1.53 16 17 C 0.06 0.65 5.76 37.16 0.21 0.87 16 18 O -0.38 -4.36 10.00 -35.23 -0.35 -4.71 16 19 C 0.09 0.78 2.70 -26.55 -0.07 0.71 16 20 C -0.18 -1.45 5.76 -26.60 -0.15 -1.60 16 21 C 0.06 0.45 6.84 37.20 0.25 0.70 16 22 O -0.38 -3.40 10.77 -35.23 -0.38 -3.78 16 23 C 0.06 0.44 6.84 37.20 0.25 0.69 16 24 C -0.15 -1.23 5.79 -26.59 -0.15 -1.38 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 2.19 6.83 -51.93 -0.35 1.83 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 29 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 32 H 0.08 1.18 8.10 -51.92 -0.42 0.76 16 33 H 0.05 0.45 7.99 -51.93 -0.42 0.04 16 34 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.06 0.46 7.79 -51.93 -0.40 0.06 16 36 H 0.08 0.56 7.99 -51.93 -0.42 0.14 16 37 H 0.08 0.77 8.14 -51.92 -0.42 0.34 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -32.51 354.70 -7.60 -40.11 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -7.42 Total: -1.75 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 0.22 Total: -4.85 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.67 Total: -24.94 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -1.40 Total: -30.00 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.51 -7.60 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870204116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.722 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds