Wall clock time and date at job start Tue Mar 31 2020 05:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47358 * 2 1 4 4 C 1.50703 * 109.46940 * 240.00070 * 2 1 3 5 5 H 1.07998 * 120.00316 * 245.45722 * 4 2 1 6 6 C 1.37880 * 119.99570 * 65.46481 * 4 2 1 7 7 N 1.31510 * 119.99950 * 9.54621 * 6 4 2 8 8 Si 1.86802 * 119.99698 * 189.55088 * 6 4 2 9 9 H 1.48496 * 109.47398 * 84.99179 * 8 6 4 10 10 H 1.48506 * 109.47042 * 204.99006 * 8 6 4 11 11 H 1.48505 * 109.47164 * 324.99052 * 8 6 4 12 12 O 1.45199 * 109.47398 * 120.00488 * 2 1 3 13 13 C 1.34224 * 116.99982 * 270.00180 * 12 2 1 14 14 O 1.20822 * 120.00140 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00167 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.47343 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47314 * 180.02562 * 16 15 13 18 18 O 1.42904 * 109.47135 * 179.97438 * 17 16 15 19 19 C 1.42904 * 113.99951 * 179.97438 * 18 17 16 20 20 C 1.53170 * 109.54310 * 90.44106 * 19 18 17 21 21 C 1.53092 * 109.16254 * 176.84818 * 20 19 18 22 22 O 1.42909 * 109.41411 * 302.39155 * 21 20 19 23 23 C 1.42904 * 114.09359 * 61.16239 * 22 21 20 24 24 C 1.53092 * 109.41237 * 298.83501 * 23 22 21 25 25 H 1.08999 * 109.47114 * 303.66286 * 1 2 3 26 26 H 1.08998 * 109.47422 * 63.66187 * 1 2 3 27 27 H 1.09000 * 109.47223 * 183.66486 * 1 2 3 28 28 H 0.97009 * 119.99693 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47376 * 59.99412 * 15 13 12 30 30 H 1.09003 * 109.47224 * 299.99632 * 15 13 12 31 31 H 1.08995 * 109.47456 * 60.00054 * 16 15 13 32 32 H 1.09008 * 109.47403 * 299.99707 * 16 15 13 33 33 H 1.08997 * 109.47882 * 59.99799 * 17 16 15 34 34 H 1.09003 * 109.47035 * 299.99681 * 17 16 15 35 35 H 1.09004 * 109.61502 * 330.22317 * 19 18 17 36 36 H 1.08998 * 109.52823 * 296.75319 * 20 19 18 37 37 H 1.09009 * 109.52224 * 56.94457 * 20 19 18 38 38 H 1.09004 * 109.48377 * 182.41559 * 21 20 19 39 39 H 1.08995 * 109.48567 * 62.37559 * 21 20 19 40 40 H 1.09007 * 109.47622 * 178.85744 * 23 22 21 41 41 H 1.08992 * 109.49010 * 58.82929 * 23 22 21 42 42 H 1.08993 * 109.52593 * 297.70807 * 24 23 22 43 43 H 1.08999 * 109.51920 * 177.51789 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5785 -1.6370 -1.1340 6 6 1.7945 -0.1772 -2.4796 7 7 1.2991 1.0357 -2.5934 8 14 2.1760 -1.1778 -4.0102 9 1 1.0242 -2.0608 -4.3243 10 1 2.4227 -0.2610 -5.1522 11 1 3.3846 -2.0069 -3.7711 12 8 2.0140 -0.6846 1.1855 13 6 2.2172 0.0638 2.2810 14 8 1.9982 1.2516 2.2504 15 6 2.7183 -0.5775 3.5494 16 6 2.8636 0.4887 4.6370 17 6 3.3730 -0.1623 5.9245 18 8 3.5093 0.8337 6.9402 19 6 3.9812 0.3278 8.1907 20 6 5.5110 0.3957 8.2264 21 6 6.0030 -0.0740 9.5979 22 8 5.4164 0.7384 10.6168 23 6 3.9894 0.6777 10.6619 24 6 3.4165 1.1776 9.3332 25 1 -0.3633 0.5696 0.8553 26 1 -0.3634 0.4559 -0.9209 27 1 -0.3634 -1.0256 0.0657 28 1 1.1322 1.4109 -3.4722 29 1 3.6872 -1.0412 3.3638 30 1 2.0088 -1.3372 3.8773 31 1 1.8950 0.9527 4.8228 32 1 3.5734 1.2482 4.3089 33 1 4.3418 -0.6260 5.7387 34 1 2.6636 -0.9219 6.2529 35 1 3.6592 -0.7065 8.3120 36 1 5.9226 -0.2504 7.4510 37 1 5.8341 1.4227 8.0556 38 1 7.0886 0.0127 9.6440 39 1 5.7144 -1.1139 9.7511 40 1 3.6243 1.3059 11.4745 41 1 3.6743 -0.3523 10.8291 42 1 3.6973 2.2203 9.1847 43 1 2.3301 1.0907 9.3492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870204116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:23 Heat of formation + Delta-G solvation = -226.136947 kcal Electronic energy + Delta-G solvation = -22295.872960 eV Core-core repulsion = 18725.650914 eV Total energy + Delta-G solvation = -3570.222046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.166 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31115 -40.57108 -38.62651 -37.68268 -35.30424 -35.01413 -33.10575 -32.09480 -31.79936 -28.38828 -27.41998 -25.27529 -24.61919 -23.96755 -22.61208 -21.41184 -21.04789 -18.90631 -18.45578 -17.99315 -17.45253 -17.30030 -17.01182 -16.82200 -16.44688 -16.12858 -15.79868 -15.25607 -15.02965 -14.78200 -14.40346 -14.16848 -13.97276 -13.75977 -13.32342 -13.18986 -13.12547 -12.93301 -12.76249 -12.56635 -12.47545 -12.39670 -12.24503 -12.16853 -11.89934 -11.69798 -11.58375 -11.37527 -11.29649 -11.00394 -10.66220 -10.61460 -10.43606 -8.32239 -6.46212 1.36423 1.41523 1.44404 1.54585 1.96233 2.38569 2.68878 2.97301 2.99780 3.74645 3.76137 3.78071 3.94626 3.99918 4.04658 4.14495 4.26749 4.30499 4.42471 4.46663 4.50686 4.54379 4.59169 4.61234 4.71118 4.74521 4.76881 4.79653 4.83946 5.05165 5.05578 5.12781 5.13950 5.17885 5.25604 5.45562 5.56444 5.86107 6.10282 6.23277 6.29815 6.60221 6.98316 7.25275 8.77839 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.047285 B = 0.002239 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.014879 B =12499.956518 C =12782.947782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.212 3.788 3 H 0.008 0.992 4 C -0.549 4.549 5 H 0.070 0.930 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.983 3.017 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.263 1.263 12 O -0.363 6.363 13 C 0.441 3.559 14 O -0.559 6.559 15 C -0.097 4.097 16 C -0.103 4.103 17 C 0.068 3.932 18 O -0.404 6.404 19 C 0.083 3.917 20 C -0.178 4.178 21 C 0.062 3.938 22 O -0.405 6.405 23 C 0.064 3.936 24 C -0.154 4.154 25 H 0.027 0.973 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.271 0.729 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.142 -7.065 24.758 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.159 3.841 3 H 0.026 0.974 4 C -0.587 4.587 5 H 0.088 0.912 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.805 3.195 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.187 1.187 12 O -0.280 6.280 13 C 0.287 3.713 14 O -0.451 6.451 15 C -0.134 4.134 16 C -0.141 4.141 17 C -0.008 4.008 18 O -0.324 6.324 19 C 0.026 3.974 20 C -0.216 4.216 21 C -0.014 4.014 22 O -0.325 6.325 23 C -0.013 4.013 24 C -0.192 4.192 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.128 0.872 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.069 -6.280 24.669 26.169 hybrid contribution -0.178 0.125 -1.393 1.410 sum 5.891 -6.155 23.276 24.787 Atomic orbital electron populations 1.21899 0.96774 1.00389 1.00307 1.20343 0.91920 0.92367 0.79462 0.97416 1.21275 1.38102 1.09276 0.90024 0.91188 1.25900 0.94468 0.95715 1.02418 1.70120 1.44637 1.15402 1.25572 0.85204 0.79251 0.78147 0.76866 1.18978 1.20566 1.18725 1.86465 1.76190 1.43760 1.21550 1.24675 0.73811 0.85822 0.87028 1.90599 1.50291 1.18940 1.85313 1.21313 1.05660 0.99496 0.86934 1.21192 1.02376 0.97562 0.92938 1.22517 1.01117 0.90479 0.86655 1.87926 1.87026 1.36085 1.21391 1.22267 0.93285 0.98279 0.83618 1.22728 0.96417 1.03019 0.99453 1.22682 0.99176 0.94351 0.85198 1.87922 1.20848 1.68951 1.54746 1.22704 0.80019 1.02078 0.96458 1.22315 1.02026 1.00481 0.94396 0.95426 0.91887 0.92523 0.92034 0.85233 0.84717 0.92002 0.92484 0.91266 0.90749 0.90096 0.89578 0.92051 0.87612 0.91289 0.87190 0.91241 0.91935 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.93 9.42 71.98 0.68 -6.25 16 2 C 0.21 11.79 2.42 29.85 0.07 11.87 16 3 H 0.01 0.51 7.10 -2.39 -0.02 0.49 16 4 C -0.55 -31.32 8.82 25.60 0.23 -31.09 16 5 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 6 C 0.01 0.83 5.17 84.66 0.44 1.27 16 7 N -0.92 -54.11 12.16 21.45 0.26 -53.85 16 8 Si 0.98 42.88 29.55 68.60 2.03 44.91 16 9 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 12 O -0.36 -17.28 9.86 -51.36 -0.51 -17.79 16 13 C 0.44 18.19 7.93 71.24 0.56 18.75 16 14 O -0.56 -27.51 15.20 21.98 0.33 -27.17 16 15 C -0.10 -2.45 5.81 29.85 0.17 -2.28 16 16 C -0.10 -2.60 4.87 30.59 0.15 -2.45 16 17 C 0.07 1.24 5.76 71.98 0.41 1.65 16 18 O -0.40 -8.88 10.00 -148.98 -1.49 -10.36 16 19 C 0.08 1.31 2.70 30.71 0.08 1.40 16 20 C -0.18 -2.62 5.76 30.68 0.18 -2.44 16 21 C 0.06 0.76 6.84 72.01 0.49 1.25 16 22 O -0.41 -6.64 10.77 -148.98 -1.60 -8.25 16 23 C 0.06 0.76 6.84 72.01 0.49 1.25 16 24 C -0.15 -2.30 5.79 30.68 0.18 -2.12 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 3.42 6.83 -2.39 -0.02 3.41 16 27 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 29 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 32 H 0.06 1.69 8.10 -2.38 -0.02 1.67 16 33 H 0.07 1.00 7.99 -2.39 -0.02 0.98 16 34 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 35 H 0.08 0.96 7.79 -2.39 -0.02 0.94 16 36 H 0.09 1.07 7.99 -2.39 -0.02 1.06 16 37 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -72.85 354.70 4.13 -68.72 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.97 Total: 12.99 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 4.14 Total: -9.20 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.26 Total: -53.85 kcal Atomic # 8 Polarization: -60.31 SS G_CDS: -3.27 Total: -63.57 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -72.85 4.13 -68.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870204116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.414 kcal (2) G-P(sol) polarization free energy of solvation -72.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds