Wall clock time and date at job start Tue Mar 31 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46856 * 2 1 4 4 N 1.46502 * 109.46889 * 119.99662 * 2 1 3 5 5 C 1.34942 * 126.03951 * 274.99510 * 4 2 1 6 6 C 1.35317 * 107.74642 * 180.02562 * 5 4 2 7 7 C 1.50699 * 126.03999 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47330 * 89.99981 * 7 6 5 9 9 C 1.38824 * 120.00132 * 180.02562 * 8 7 6 10 10 C 1.39793 * 119.58667 * 359.97438 * 9 8 7 11 11 C 1.38588 * 119.49662 * 179.97438 * 10 9 8 12 12 C 1.38397 * 118.67927 * 0.02562 * 11 10 9 13 13 C 1.40557 * 119.14388 * 359.97438 * 12 11 10 14 14 C 1.41319 * 119.77748 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00151 * 353.78653 * 14 13 12 16 16 C 1.40028 * 119.99579 * 173.78331 * 14 13 12 17 17 N 1.30742 * 120.00153 * 6.35416 * 16 14 13 18 18 Si 1.86799 * 119.99796 * 186.35099 * 16 14 13 19 19 H 1.48501 * 109.47019 * 94.98744 * 18 16 14 20 20 H 1.48496 * 109.47117 * 214.98389 * 18 16 14 21 21 H 1.48496 * 109.47515 * 334.98833 * 18 16 14 22 22 N 1.31959 * 119.58511 * 179.72719 * 9 8 7 23 23 C 1.39865 * 107.92013 * 0.02562 * 6 5 4 24 24 N 1.30838 * 108.20511 * 0.02562 * 23 6 5 25 25 H 1.08997 * 109.46836 * 59.99926 * 1 2 3 26 26 H 1.08999 * 109.47126 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47331 * 300.00078 * 1 2 3 28 28 H 1.08995 * 109.46765 * 240.00280 * 2 1 3 29 29 H 1.09007 * 109.46818 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47111 * 299.99444 * 3 2 1 31 31 H 1.08997 * 109.47578 * 60.00179 * 3 2 1 32 32 H 1.08007 * 126.12709 * 359.76849 * 5 4 2 33 33 H 1.08996 * 109.46931 * 210.00276 * 7 6 5 34 34 H 1.08999 * 109.46814 * 329.99961 * 7 6 5 35 35 H 0.97006 * 119.99824 * 359.97438 * 8 7 6 36 36 H 1.08008 * 120.25261 * 359.97438 * 10 9 8 37 37 H 1.07997 * 120.66640 * 180.02562 * 11 10 9 38 38 H 1.07991 * 120.42290 * 179.97438 * 12 11 10 39 39 H 0.96998 * 120.00072 * 179.97438 * 17 16 14 40 40 H 1.07998 * 125.90042 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1933 -0.1392 2.4154 6 6 2.6570 -1.1049 3.2421 7 6 2.9926 -0.9368 4.7016 8 7 1.8043 -1.2166 5.5114 9 6 1.8699 -1.1252 6.8950 10 6 3.0745 -0.7659 7.5067 11 6 3.1377 -0.6747 8.8881 12 6 1.9975 -0.9448 9.6245 13 6 0.8162 -1.3011 8.9512 14 6 -0.3560 -1.5793 9.6898 15 1 -0.3185 -1.6163 10.7685 16 6 -1.5661 -1.8068 9.0230 17 7 -1.5888 -1.8853 7.7181 18 14 -3.1480 -1.9982 9.9978 19 1 -3.8443 -0.6887 10.0736 20 1 -4.0272 -2.9880 9.3253 21 1 -2.8302 -2.4698 11.3696 22 7 0.7931 -1.3738 7.6162 23 6 2.7697 -2.2868 2.5027 24 7 2.3879 -2.0394 1.2759 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 2.0020 0.8897 2.6824 33 1 3.7889 -1.6296 4.9734 34 1 3.3231 0.0860 4.8828 35 1 0.9714 -1.4651 5.0806 36 1 3.9492 -0.5609 6.9072 37 1 4.0584 -0.3983 9.3803 38 1 2.0152 -0.8827 10.7024 39 1 -2.4270 -2.0433 7.2563 40 1 3.1133 -3.2390 2.8791 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883356831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:34 Heat of formation + Delta-G solvation = 94.058874 kcal Electronic energy + Delta-G solvation = -21509.989979 eV Core-core repulsion = 18325.547088 eV Total energy + Delta-G solvation = -3184.442892 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.28172 -40.02133 -37.16704 -36.29985 -35.06552 -32.48261 -31.87859 -31.19826 -29.98498 -28.25350 -27.22805 -26.36542 -23.74599 -23.27975 -22.24755 -21.32789 -20.89655 -19.22108 -18.27948 -17.49071 -16.56033 -16.46164 -16.23721 -15.92580 -15.66885 -15.29503 -15.01233 -14.79951 -14.70235 -14.09674 -13.96493 -13.76304 -13.44580 -13.30385 -13.10151 -12.97809 -12.79713 -12.69141 -12.53129 -12.37215 -12.17588 -12.10266 -11.71272 -11.60981 -11.23102 -10.59419 -10.39149 -9.77958 -9.50534 -9.37469 -8.20535 -8.19998 -6.43852 0.89150 1.10521 1.40419 1.42183 1.55016 1.56309 1.60064 1.67058 2.26831 2.95810 3.01338 3.47569 3.87910 3.89430 4.01149 4.07959 4.09976 4.26402 4.44381 4.44788 4.59865 4.65830 4.71117 4.78430 4.79825 4.90045 4.91062 5.05902 5.05954 5.12532 5.18431 5.18635 5.25910 5.41530 5.64051 5.77580 6.02398 6.11050 6.13825 6.27508 6.63011 6.70700 6.89258 7.00664 7.28999 8.39872 8.55399 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.017301 B = 0.003774 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.027004 B = 7418.336571 C = 8504.041126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 C -0.159 4.159 4 N -0.365 5.365 5 C 0.083 3.917 6 C -0.264 4.264 7 C 0.224 3.776 8 N -0.729 5.729 9 C 0.395 3.605 10 C -0.364 4.364 11 C -0.030 4.030 12 C -0.346 4.346 13 C 0.260 3.740 14 C -0.475 4.475 15 H 0.085 0.915 16 C 0.027 3.973 17 N -0.754 5.754 18 Si 0.984 3.016 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.256 1.256 22 N -0.568 5.568 23 C 0.056 3.944 24 N -0.329 5.329 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.388 0.612 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.101 0.899 39 H 0.274 0.726 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.518 6.040 -15.819 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 C -0.217 4.217 4 N -0.148 5.148 5 C -0.066 4.066 6 C -0.276 4.276 7 C 0.100 3.900 8 N -0.363 5.363 9 C 0.154 3.846 10 C -0.389 4.389 11 C -0.054 4.054 12 C -0.369 4.369 13 C 0.133 3.867 14 C -0.507 4.507 15 H 0.103 0.897 16 C -0.194 4.194 17 N -0.376 5.376 18 Si 0.805 3.195 19 H -0.189 1.189 20 H -0.194 1.194 21 H -0.179 1.179 22 N -0.291 5.291 23 C -0.130 4.130 24 N -0.149 5.149 25 H 0.123 0.877 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.123 0.877 29 H 0.082 0.918 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.210 0.790 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.222 0.778 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.618 5.418 -17.796 18.951 hybrid contribution -0.065 0.120 1.615 1.621 sum 3.552 5.538 -16.181 17.468 Atomic orbital electron populations 1.22230 0.93141 1.02401 1.04173 1.21613 0.95210 0.93889 0.84700 1.22200 1.02051 0.92361 1.05066 1.49137 1.49556 1.06837 1.09227 1.22624 0.98192 1.00553 0.85209 1.20063 1.16483 0.94343 0.96729 1.19266 0.86687 1.00203 0.83860 1.44524 1.13279 1.77261 1.01262 1.19008 0.90212 0.89376 0.86025 1.20972 0.98141 1.24627 0.95208 1.21016 0.96911 0.93842 0.93627 1.21689 0.95900 1.20343 0.99001 1.18664 0.92622 0.87585 0.87840 1.19922 0.92960 1.43295 0.94546 0.89681 1.26936 1.03895 0.92672 0.95897 1.70266 1.27908 1.29604 1.09842 0.85175 0.76301 0.78876 0.79162 1.18949 1.19423 1.17922 1.68185 1.26815 1.27042 1.07047 1.24047 0.98635 0.99801 0.90547 1.77281 1.21995 0.94716 1.20945 0.87700 0.93608 0.92441 0.87694 0.91775 0.87530 0.91211 0.78980 0.92028 0.91812 0.77835 0.86062 0.85261 0.88107 0.91543 0.79188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.52 71.98 0.69 -1.72 16 2 C 0.15 2.30 3.93 44.99 0.18 2.47 16 3 C -0.16 -1.61 8.83 71.98 0.64 -0.98 16 4 N -0.37 -8.56 3.53 -327.48 -1.15 -9.71 16 5 C 0.08 1.97 10.50 83.54 0.88 2.85 16 6 C -0.26 -7.30 5.47 -20.15 -0.11 -7.41 16 7 C 0.22 6.94 5.36 85.63 0.46 7.40 16 8 N -0.73 -29.80 5.71 -348.73 -1.99 -31.79 16 9 C 0.39 19.62 7.65 133.42 1.02 20.64 16 10 C -0.36 -16.45 9.34 22.73 0.21 -16.24 16 11 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 12 C -0.35 -18.03 9.83 22.87 0.22 -17.81 16 13 C 0.26 15.18 6.54 40.18 0.26 15.45 16 14 C -0.48 -27.02 9.13 23.46 0.21 -26.81 16 15 H 0.09 4.56 7.85 -2.91 -0.02 4.53 16 16 C 0.03 1.45 5.49 85.29 0.47 1.92 16 17 N -0.75 -41.98 11.48 21.84 0.25 -41.73 16 18 Si 0.98 39.61 29.56 68.60 2.03 41.63 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 20 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 22 N -0.57 -32.77 7.91 -186.59 -1.48 -34.25 16 23 C 0.06 1.55 11.96 85.23 1.02 2.57 16 24 N -0.33 -9.38 12.58 -57.03 -0.72 -10.10 16 25 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.71 7.15 -2.39 -0.02 0.70 16 32 H 0.19 3.59 7.26 -2.91 -0.02 3.57 16 33 H 0.06 1.86 7.92 -2.39 -0.02 1.85 16 34 H 0.06 1.86 7.92 -2.39 -0.02 1.84 16 35 H 0.39 16.77 8.58 -92.70 -0.80 15.97 16 36 H 0.12 4.65 6.68 -2.91 -0.02 4.63 16 37 H 0.13 4.83 8.06 -2.91 -0.02 4.80 16 38 H 0.10 4.91 8.06 -2.92 -0.02 4.89 16 39 H 0.27 13.84 8.29 -92.71 -0.77 13.08 16 40 H 0.19 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -70.75 340.50 3.56 -67.19 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.25 Total: 37.56 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 6.37 Total: -18.80 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -5.09 Total: -127.58 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.63 kcal Total: -70.75 3.56 -67.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883356831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.249 kcal (2) G-P(sol) polarization free energy of solvation -70.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds