Wall clock time and date at job start Tue Mar 31 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99896 * 2 1 4 4 O 1.42900 * 109.47458 * 82.73797 * 3 2 1 5 5 C 1.42900 * 113.99719 * 284.24861 * 4 3 2 6 6 C 1.50697 * 109.47192 * 202.73843 * 3 2 1 7 7 O 1.21276 * 120.00316 * 230.17214 * 6 3 2 8 8 N 1.34777 * 119.99829 * 50.17524 * 6 3 2 9 9 C 1.47073 * 120.88219 * 356.17789 * 8 6 3 10 10 C 1.53244 * 108.52148 * 128.83805 * 9 8 6 11 11 N 1.46892 * 109.34210 * 53.83027 * 10 9 8 12 12 C 1.46900 * 111.00334 * 172.74447 * 11 10 9 13 13 C 1.52998 * 109.47516 * 169.99548 * 12 11 10 14 14 C 1.50697 * 109.47379 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99854 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99921 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00024 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99740 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47063 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46770 * 120.00191 * 18 16 14 21 21 H 1.48497 * 109.47113 * 240.00307 * 18 16 14 22 22 C 1.46903 * 111.26769 * 296.89529 * 11 10 9 23 23 C 1.47081 * 120.88151 * 176.19854 * 8 6 3 24 24 H 1.09002 * 109.46582 * 63.60087 * 1 2 3 25 25 H 1.09004 * 109.46632 * 183.59323 * 1 2 3 26 26 H 1.08992 * 109.47932 * 303.59824 * 1 2 3 27 27 H 1.09006 * 109.46730 * 322.73889 * 3 2 1 28 28 H 1.09006 * 109.46624 * 196.04237 * 5 4 3 29 29 H 1.08995 * 109.47568 * 316.04256 * 5 4 3 30 30 H 1.08994 * 109.47161 * 76.04732 * 5 4 3 31 31 H 1.08994 * 109.63147 * 9.12723 * 9 8 6 32 32 H 1.09004 * 109.79323 * 248.63960 * 9 8 6 33 33 H 1.09006 * 109.49142 * 173.79191 * 10 9 8 34 34 H 1.09000 * 109.49074 * 293.86792 * 10 9 8 35 35 H 1.08997 * 109.47353 * 290.00267 * 12 11 10 36 36 H 1.09010 * 109.46884 * 50.00073 * 12 11 10 37 37 H 1.08997 * 109.47396 * 300.00692 * 13 12 11 38 38 H 1.09004 * 109.46930 * 60.00108 * 13 12 11 39 39 H 0.97000 * 119.99459 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.48993 * 303.14468 * 22 11 10 41 41 H 1.09000 * 109.51669 * 183.07783 * 22 11 10 42 42 H 1.09002 * 109.62771 * 350.86864 * 23 8 6 43 43 H 1.09001 * 109.62928 * 111.45190 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 2.0484 1.8100 1.3364 5 6 0.7816 2.2544 1.8263 6 6 3.4116 1.2315 -0.5492 7 8 4.3293 1.7384 0.0604 8 7 3.6450 0.6020 -1.7178 9 6 2.5617 -0.0910 -2.4315 10 6 2.5485 0.3936 -3.8852 11 7 3.8859 0.2210 -4.4677 12 6 3.8747 0.5120 -5.9076 13 6 5.3123 0.5665 -6.4282 14 6 5.3008 0.8656 -7.9051 15 1 4.3620 1.0035 -8.4208 16 6 6.4889 0.9643 -8.5978 17 7 7.6321 0.7969 -7.9697 18 14 6.4745 1.3359 -10.4285 19 1 5.0715 1.4800 -10.8933 20 1 7.2121 2.5994 -10.6828 21 1 7.1286 0.2241 -11.1643 22 6 4.8812 1.0472 -3.7714 23 6 4.9899 0.5894 -2.3130 24 1 -0.3632 0.4569 -0.9205 25 1 -0.3633 -1.0257 0.0644 26 1 -0.3635 0.5686 0.8559 27 1 1.4107 1.9701 -0.6222 28 1 0.9311 2.8729 2.7113 29 1 0.2786 2.8384 1.0556 30 1 0.1691 1.3910 2.0857 31 1 1.6064 0.1396 -1.9601 32 1 2.7322 -1.1673 -2.4059 33 1 1.8252 -0.1886 -4.4562 34 1 2.2722 1.4476 -3.9148 35 1 3.3277 -0.2713 -6.4323 36 1 3.3891 1.4725 -6.0803 37 1 5.8594 1.3497 -5.9035 38 1 5.7980 -0.3940 -6.2554 39 1 8.4679 0.8660 -8.4572 40 1 4.5723 2.0920 -3.8026 41 1 5.8497 0.9395 -4.2596 42 1 5.6400 1.2699 -1.7632 43 1 5.3974 -0.4210 -2.2758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930954088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:03 Heat of formation + Delta-G solvation = -100.706807 kcal Electronic energy + Delta-G solvation = -23705.729300 eV Core-core repulsion = 20173.239064 eV Total energy + Delta-G solvation = -3532.490236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.66399 -38.98759 -37.79291 -36.54519 -34.84073 -32.89761 -31.21039 -30.24479 -29.19133 -27.01226 -26.43192 -25.68769 -24.01131 -23.40592 -21.57656 -20.21319 -19.14782 -18.13146 -17.86321 -17.25717 -16.44568 -15.96289 -15.35680 -15.03579 -14.87436 -14.77220 -14.58275 -14.30713 -14.17834 -14.08375 -13.95525 -13.25819 -13.13486 -12.68967 -12.38859 -12.22059 -11.94545 -11.84081 -11.48415 -11.27730 -11.02393 -10.97765 -10.70536 -10.55975 -10.47183 -10.22853 -10.02984 -9.86142 -9.39683 -9.13255 -8.68434 -8.38745 -7.80956 -6.04339 -4.06874 2.14262 2.60392 3.28702 3.36346 3.37878 3.39826 3.60892 4.17329 4.28960 4.37544 4.47938 4.65475 4.78588 4.81597 4.98512 5.00117 5.12831 5.19808 5.26969 5.32241 5.37794 5.41141 5.57988 5.70879 5.78898 5.94366 6.11139 6.23923 6.29285 6.36271 6.41774 6.48792 6.62198 6.84472 7.24639 7.42457 7.49060 7.68766 7.79046 7.98551 8.01435 8.37392 8.99627 9.57273 11.07002 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.037173 B = 0.003138 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.050129 B = 8921.393608 C = 9310.132721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.379 6.379 3 C 0.232 3.768 4 O -0.364 6.364 5 C 0.020 3.980 6 C 0.534 3.466 7 O -0.514 6.514 8 N -0.595 5.595 9 C 0.112 3.888 10 C 0.036 3.964 11 N -0.538 5.538 12 C 0.063 3.937 13 C 0.020 3.980 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.036 3.964 23 C 0.117 3.883 24 H 0.049 0.951 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.030 0.970 35 H 0.065 0.935 36 H 0.020 0.980 37 H 0.021 0.979 38 H 0.026 0.974 39 H 0.261 0.739 40 H 0.032 0.968 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.831 -0.063 16.205 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.299 6.299 3 C 0.133 3.867 4 O -0.283 6.283 5 C -0.077 4.077 6 C 0.318 3.682 7 O -0.389 6.389 8 N -0.330 5.330 9 C -0.011 4.011 10 C -0.093 4.093 11 N -0.263 5.263 12 C -0.064 4.064 13 C -0.018 4.018 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.092 4.092 23 C -0.005 4.005 24 H 0.068 0.932 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.128 0.872 42 H 0.112 0.888 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.735 -0.430 16.676 22.932 hybrid contribution -0.838 1.240 -1.354 2.018 sum -16.573 0.810 15.322 22.584 Atomic orbital electron populations 1.23237 0.80394 1.04227 1.00853 1.88178 1.20481 1.27788 1.93460 1.23077 0.93547 0.84470 0.85576 1.88167 1.30580 1.80207 1.29386 1.23131 0.85554 0.98969 1.00000 1.19450 0.88336 0.79174 0.81212 1.90743 1.43711 1.46170 1.58297 1.48087 1.11594 1.51976 1.21374 1.22069 0.89939 0.97879 0.91197 1.22518 0.92897 0.99192 0.94692 1.62080 1.04153 1.55189 1.04881 1.22339 1.01890 0.97969 0.84159 1.19260 0.89217 0.97855 0.95420 1.21191 0.92449 1.48548 0.93940 0.92710 1.24995 0.95600 0.95330 0.98383 1.69967 0.97310 1.49876 1.35974 0.86531 0.78048 0.77926 0.85453 1.19788 1.21036 1.20940 1.22637 0.99269 0.94513 0.92791 1.21919 0.82399 1.03076 0.93081 0.93228 0.88553 0.92787 0.90186 0.88956 0.93566 0.92914 0.89308 0.90032 0.89755 0.95175 0.91681 0.96172 0.96122 0.95534 0.92962 0.94985 0.87164 0.88829 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 10.22 101.05 1.03 1.09 16 2 O -0.38 -3.96 8.23 -59.04 -0.49 -4.45 16 3 C 0.23 2.74 2.38 36.00 0.09 2.82 16 4 O -0.36 -4.63 10.15 -66.21 -0.67 -5.30 16 5 C 0.02 0.15 9.95 101.05 1.01 1.15 16 6 C 0.53 8.15 7.51 -10.99 -0.08 8.07 16 7 O -0.51 -9.68 16.00 -14.16 -0.23 -9.90 16 8 N -0.60 -8.53 3.01 -172.46 -0.52 -9.05 16 9 C 0.11 1.33 5.91 -3.60 -0.02 1.31 16 10 C 0.04 0.49 5.58 -3.70 -0.02 0.47 16 11 N -0.54 -9.25 4.78 -234.32 -1.12 -10.37 16 12 C 0.06 1.27 5.21 -3.83 -0.02 1.25 16 13 C 0.02 0.49 4.22 -27.89 -0.12 0.37 16 14 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.04 0.62 5.04 -3.70 -0.02 0.60 16 23 C 0.12 1.79 6.59 -3.60 -0.02 1.77 16 24 H 0.05 0.23 7.92 -51.93 -0.41 -0.18 16 25 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.27 4.63 -51.93 -0.24 0.03 16 27 H 0.08 0.73 7.56 -51.93 -0.39 0.34 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.26 7.78 -51.93 -0.40 -0.14 16 30 H 0.05 0.32 5.89 -51.93 -0.31 0.01 16 31 H 0.09 0.86 4.49 -51.93 -0.23 0.62 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.02 0.41 8.08 -51.92 -0.42 -0.01 16 37 H 0.02 0.54 6.18 -51.93 -0.32 0.22 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.11 2.11 5.73 -51.93 -0.30 1.81 16 42 H 0.09 1.47 7.09 -51.93 -0.37 1.10 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -33.48 338.14 -7.54 -41.02 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -6.74 Total: -3.44 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 1.41 Total: 5.68 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.90 Total: -45.03 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -1.38 Total: -19.66 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.48 -7.54 -41.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930954088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.683 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds