Wall clock time and date at job start Tue Mar 31 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99896 * 2 1 4 4 O 1.42900 * 109.47458 * 82.73797 * 3 2 1 5 5 C 1.42900 * 113.99719 * 284.24861 * 4 3 2 6 6 C 1.50697 * 109.47192 * 202.73843 * 3 2 1 7 7 O 1.21276 * 120.00316 * 230.17214 * 6 3 2 8 8 N 1.34777 * 119.99829 * 50.17524 * 6 3 2 9 9 C 1.47073 * 120.88219 * 356.17789 * 8 6 3 10 10 C 1.53244 * 108.52148 * 128.83805 * 9 8 6 11 11 N 1.46892 * 109.34210 * 53.83027 * 10 9 8 12 12 C 1.46900 * 111.00334 * 172.74447 * 11 10 9 13 13 C 1.52998 * 109.47516 * 169.99548 * 12 11 10 14 14 C 1.50697 * 109.47379 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99854 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99921 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00024 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99740 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47063 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46770 * 120.00191 * 18 16 14 21 21 H 1.48497 * 109.47113 * 240.00307 * 18 16 14 22 22 C 1.46903 * 111.26769 * 296.89529 * 11 10 9 23 23 C 1.47081 * 120.88151 * 176.19854 * 8 6 3 24 24 H 1.09002 * 109.46582 * 63.60087 * 1 2 3 25 25 H 1.09004 * 109.46632 * 183.59323 * 1 2 3 26 26 H 1.08992 * 109.47932 * 303.59824 * 1 2 3 27 27 H 1.09006 * 109.46730 * 322.73889 * 3 2 1 28 28 H 1.09006 * 109.46624 * 196.04237 * 5 4 3 29 29 H 1.08995 * 109.47568 * 316.04256 * 5 4 3 30 30 H 1.08994 * 109.47161 * 76.04732 * 5 4 3 31 31 H 1.08994 * 109.63147 * 9.12723 * 9 8 6 32 32 H 1.09004 * 109.79323 * 248.63960 * 9 8 6 33 33 H 1.09006 * 109.49142 * 173.79191 * 10 9 8 34 34 H 1.09000 * 109.49074 * 293.86792 * 10 9 8 35 35 H 1.08997 * 109.47353 * 290.00267 * 12 11 10 36 36 H 1.09010 * 109.46884 * 50.00073 * 12 11 10 37 37 H 1.08997 * 109.47396 * 300.00692 * 13 12 11 38 38 H 1.09004 * 109.46930 * 60.00108 * 13 12 11 39 39 H 0.97000 * 119.99459 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.48993 * 303.14468 * 22 11 10 41 41 H 1.09000 * 109.51669 * 183.07783 * 22 11 10 42 42 H 1.09002 * 109.62771 * 350.86864 * 23 8 6 43 43 H 1.09001 * 109.62928 * 111.45190 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 2.0484 1.8100 1.3364 5 6 0.7816 2.2544 1.8263 6 6 3.4116 1.2315 -0.5492 7 8 4.3293 1.7384 0.0604 8 7 3.6450 0.6020 -1.7178 9 6 2.5617 -0.0910 -2.4315 10 6 2.5485 0.3936 -3.8852 11 7 3.8859 0.2210 -4.4677 12 6 3.8747 0.5120 -5.9076 13 6 5.3123 0.5665 -6.4282 14 6 5.3008 0.8656 -7.9051 15 1 4.3620 1.0035 -8.4208 16 6 6.4889 0.9643 -8.5978 17 7 7.6321 0.7969 -7.9697 18 14 6.4745 1.3359 -10.4285 19 1 5.0715 1.4800 -10.8933 20 1 7.2121 2.5994 -10.6828 21 1 7.1286 0.2241 -11.1643 22 6 4.8812 1.0472 -3.7714 23 6 4.9899 0.5894 -2.3130 24 1 -0.3632 0.4569 -0.9205 25 1 -0.3633 -1.0257 0.0644 26 1 -0.3635 0.5686 0.8559 27 1 1.4107 1.9701 -0.6222 28 1 0.9311 2.8729 2.7113 29 1 0.2786 2.8384 1.0556 30 1 0.1691 1.3910 2.0857 31 1 1.6064 0.1396 -1.9601 32 1 2.7322 -1.1673 -2.4059 33 1 1.8252 -0.1886 -4.4562 34 1 2.2722 1.4476 -3.9148 35 1 3.3277 -0.2713 -6.4323 36 1 3.3891 1.4725 -6.0803 37 1 5.8594 1.3497 -5.9035 38 1 5.7980 -0.3940 -6.2554 39 1 8.4679 0.8660 -8.4572 40 1 4.5723 2.0920 -3.8026 41 1 5.8497 0.9395 -4.2596 42 1 5.6400 1.2699 -1.7632 43 1 5.3974 -0.4210 -2.2758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930954088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:02 Heat of formation + Delta-G solvation = -125.162617 kcal Electronic energy + Delta-G solvation = -23706.789783 eV Core-core repulsion = 20173.239064 eV Total energy + Delta-G solvation = -3533.550720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.70087 -39.98178 -39.03245 -37.34934 -36.25614 -34.83691 -32.40944 -31.85281 -30.13078 -28.37004 -26.94886 -26.65682 -25.75226 -24.65006 -22.91801 -21.73021 -20.35332 -19.07466 -18.64979 -18.57352 -18.05285 -17.13293 -16.56891 -16.32435 -16.12964 -15.95157 -15.75200 -15.58837 -15.43402 -15.11364 -14.75603 -14.57010 -14.23301 -13.87034 -13.75716 -13.33708 -13.21973 -13.12860 -12.86531 -12.60864 -12.43030 -12.34107 -12.30468 -12.09614 -11.89342 -11.34545 -11.20889 -11.15292 -10.99304 -10.76803 -10.53895 -9.91654 -9.21027 -8.19771 -6.30473 1.09792 1.40918 1.41353 1.54139 1.56062 2.40433 2.58296 2.78612 3.01784 3.14301 3.36988 3.53686 3.87438 3.95979 4.10550 4.19395 4.22855 4.30313 4.34118 4.44116 4.50214 4.55293 4.59564 4.66238 4.72684 4.77910 4.80149 4.86822 4.96738 5.04350 5.07459 5.29746 5.45709 5.64896 5.76777 5.79127 5.84951 6.00943 6.18322 6.26596 6.31685 6.86662 6.87365 7.38711 8.92206 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.037173 B = 0.003138 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.050129 B = 8921.393608 C = 9310.132721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.396 6.396 3 C 0.241 3.759 4 O -0.402 6.402 5 C 0.012 3.988 6 C 0.524 3.476 7 O -0.561 6.561 8 N -0.596 5.596 9 C 0.117 3.883 10 C 0.036 3.964 11 N -0.544 5.544 12 C 0.080 3.920 13 C 0.027 3.973 14 C -0.542 4.542 15 H 0.061 0.939 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.964 3.036 19 H -0.260 1.260 20 H -0.281 1.281 21 H -0.279 1.279 22 C 0.046 3.954 23 C 0.124 3.876 24 H 0.070 0.930 25 H 0.110 0.890 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.021 0.979 37 H 0.000 1.000 38 H -0.004 1.004 39 H 0.263 0.737 40 H 0.025 0.975 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.955 -0.152 15.888 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 O -0.317 6.317 3 C 0.142 3.858 4 O -0.322 6.322 5 C -0.083 4.083 6 C 0.311 3.689 7 O -0.440 6.440 8 N -0.329 5.329 9 C -0.004 4.004 10 C -0.093 4.093 11 N -0.269 5.269 12 C -0.047 4.047 13 C -0.010 4.010 14 C -0.581 4.581 15 H 0.079 0.921 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.789 3.211 19 H -0.184 1.184 20 H -0.206 1.206 21 H -0.204 1.204 22 C -0.083 4.083 23 C 0.002 3.998 24 H 0.088 0.912 25 H 0.128 0.872 26 H 0.083 0.917 27 H 0.129 0.871 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.103 0.897 33 H 0.126 0.874 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.040 0.960 37 H 0.018 0.982 38 H 0.014 0.986 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.917 -0.535 16.360 25.016 hybrid contribution 0.088 1.239 -1.188 1.719 sum -18.829 0.705 15.172 24.191 Atomic orbital electron populations 1.23540 0.77942 1.05653 1.02472 1.88142 1.23036 1.26933 1.93566 1.22843 0.91406 0.85702 0.85861 1.88117 1.33528 1.80678 1.29848 1.23397 0.84081 1.00020 1.00839 1.20229 0.89793 0.78028 0.80874 1.90709 1.45685 1.48059 1.59524 1.48188 1.11502 1.51810 1.21450 1.22224 0.90484 0.97710 0.90023 1.22677 0.90855 1.00083 0.95649 1.62029 1.06423 1.55104 1.03389 1.21995 0.98337 0.98305 0.86108 1.19091 0.92039 0.95298 0.94609 1.21650 0.92819 1.48261 0.95333 0.92062 1.25942 0.95205 0.95086 1.03467 1.70104 0.98035 1.50935 1.38021 0.85407 0.78623 0.77713 0.79337 1.18429 1.20646 1.20450 1.22431 0.97988 0.94242 0.93627 1.21684 0.83576 1.02807 0.91750 0.91151 0.87217 0.91710 0.87130 0.88299 0.91441 0.91396 0.86183 0.89700 0.87374 0.94735 0.90911 0.96037 0.98211 0.98584 0.92817 0.95691 0.90169 0.89706 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.22 113.37 1.16 1.15 16 2 O -0.40 -7.12 8.23 -126.21 -1.04 -8.16 16 3 C 0.24 5.14 2.38 71.24 0.17 5.31 16 4 O -0.40 -9.62 10.15 -119.36 -1.21 -10.83 16 5 C 0.01 0.14 9.95 113.37 1.13 1.27 16 6 C 0.52 15.70 7.51 87.66 0.66 16.36 16 7 O -0.56 -21.63 16.00 15.83 0.25 -21.37 16 8 N -0.60 -16.56 3.01 -817.95 -2.46 -19.02 16 9 C 0.12 2.49 5.91 86.35 0.51 3.00 16 10 C 0.04 0.87 5.58 86.39 0.48 1.35 16 11 N -0.54 -18.43 4.78 -895.24 -4.28 -22.70 16 12 C 0.08 3.18 5.21 86.30 0.45 3.63 16 13 C 0.03 1.39 4.22 29.85 0.13 1.51 16 14 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 16 C 0.00 0.06 5.46 84.66 0.46 0.52 16 17 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 18 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 22 C 0.05 1.62 5.04 86.38 0.44 2.06 16 23 C 0.12 3.91 6.59 86.35 0.57 4.48 16 24 H 0.07 0.31 7.92 -2.39 -0.02 0.29 16 25 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.40 4.63 -2.39 -0.01 0.39 16 27 H 0.11 1.63 7.56 -2.38 -0.02 1.61 16 28 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.07 0.53 7.78 -2.39 -0.02 0.51 16 30 H 0.07 0.61 5.89 -2.39 -0.01 0.60 16 31 H 0.12 1.84 4.49 -2.39 -0.01 1.83 16 32 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.11 2.17 8.11 -2.38 -0.02 2.15 16 34 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.02 0.85 8.08 -2.38 -0.02 0.83 16 37 H 0.00 -0.02 6.18 -2.39 -0.01 -0.03 16 38 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 3.30 5.73 -2.39 -0.01 3.29 16 42 H 0.08 2.82 7.09 -2.39 -0.02 2.80 16 43 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -74.74 338.14 0.95 -73.79 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.00 Total: 7.90 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 6.38 Total: 10.59 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -6.45 Total: -97.75 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -2.00 Total: -40.36 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -74.74 0.95 -73.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930954088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.375 kcal (2) G-P(sol) polarization free energy of solvation -74.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds