Wall clock time and date at job start Tue Mar 31 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30836 * 125.90192 * 2 1 4 4 N 1.40084 * 108.20904 * 180.14351 * 3 2 1 5 5 H 0.97001 * 126.04219 * 179.85882 * 4 3 2 6 6 C 1.34947 * 107.92164 * 359.58781 * 4 3 2 7 7 C 1.35317 * 107.74962 * 0.24402 * 6 4 3 8 8 C 1.50698 * 126.04222 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.46992 * 265.02374 * 8 7 6 10 10 C 1.53003 * 109.47090 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.47132 * 179.97438 * 10 9 8 12 12 C 1.38820 * 119.99929 * 180.02562 * 11 10 9 13 13 C 1.39798 * 119.58737 * 359.72694 * 12 11 10 14 14 C 1.38596 * 119.49020 * 179.76946 * 13 12 11 15 15 C 1.38390 * 118.68165 * 0.49661 * 14 13 12 16 16 C 1.40557 * 119.14851 * 359.74753 * 15 14 13 17 17 C 1.41311 * 119.78160 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00293 * 359.97438 * 17 16 15 19 19 C 1.40027 * 120.00068 * 179.97438 * 17 16 15 20 20 N 1.30738 * 119.99683 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00140 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46969 * 59.99771 * 21 19 17 23 23 H 1.48502 * 109.46794 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47095 * 299.99646 * 21 19 17 25 25 N 1.31966 * 119.58405 * 179.97438 * 12 11 10 26 26 H 1.08995 * 109.48061 * 270.30456 * 1 2 3 27 27 H 1.09003 * 109.47004 * 30.31144 * 1 2 3 28 28 H 1.09005 * 109.47121 * 150.30115 * 1 2 3 29 29 H 1.08007 * 126.12498 * 180.26712 * 6 4 3 30 30 H 1.08996 * 109.47131 * 25.02274 * 8 7 6 31 31 H 1.09002 * 109.47409 * 145.02425 * 8 7 6 32 32 H 1.08996 * 109.47101 * 299.99919 * 9 8 7 33 33 H 1.08995 * 109.47312 * 60.00009 * 9 8 7 34 34 H 1.08996 * 109.47142 * 299.99967 * 10 9 8 35 35 H 1.09000 * 109.46574 * 60.00134 * 10 9 8 36 36 H 0.97005 * 119.99897 * 359.97438 * 11 10 9 37 37 H 1.08005 * 120.24906 * 359.97438 * 13 12 11 38 38 H 1.08002 * 120.65434 * 180.24925 * 14 13 12 39 39 H 1.07997 * 120.42568 * 179.77124 * 15 14 13 40 40 H 0.97007 * 120.00543 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0033 5 1 4.3908 1.2078 -0.0060 6 6 3.6141 -0.7154 0.0039 7 6 2.3270 -1.1331 0.0061 8 6 1.8598 -2.5658 0.0143 9 6 1.5830 -3.0201 -1.4202 10 6 1.1092 -4.4749 -1.4119 11 7 0.8435 -4.9098 -2.7854 12 6 0.3994 -6.2019 -3.0307 13 6 0.2140 -7.0828 -1.9611 14 6 -0.2341 -8.3709 -2.2079 15 6 -0.4759 -8.7508 -3.5165 16 6 -0.2656 -7.8208 -4.5493 17 6 -0.5089 -8.1943 -5.8903 18 1 -0.8548 -9.1915 -6.1189 19 6 -0.3014 -7.2714 -6.9227 20 7 0.1169 -6.0640 -6.6459 21 14 -0.6222 -7.7652 -8.6955 22 1 -2.0451 -8.1616 -8.8491 23 1 -0.3295 -6.6166 -9.5900 24 1 0.2523 -8.9099 -9.0565 25 7 0.1621 -6.5848 -4.2711 26 1 -0.3635 0.0055 1.0275 27 1 -0.3633 0.8872 -0.5187 28 1 -0.3634 -0.8927 -0.5092 29 1 4.4891 -1.3486 0.0077 30 1 2.6323 -3.1974 0.4528 31 1 0.9464 -2.6467 0.6037 32 1 0.8104 -2.3885 -1.8587 33 1 2.4962 -2.9392 -2.0096 34 1 1.8820 -5.1062 -0.9736 35 1 0.1960 -4.5562 -0.8224 36 1 0.9773 -4.2946 -3.5234 37 1 0.4153 -6.7609 -0.9500 38 1 -0.3876 -9.0657 -1.3954 39 1 -0.8221 -9.7487 -3.7412 40 1 0.2603 -5.4244 -7.3611 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116662101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:06 Heat of formation + Delta-G solvation = 95.516853 kcal Electronic energy + Delta-G solvation = -21088.879734 eV Core-core repulsion = 17904.500065 eV Total energy + Delta-G solvation = -3184.379669 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40305 -38.22996 -36.05432 -33.99443 -33.15961 -32.51225 -30.46153 -29.85371 -28.28140 -27.94192 -25.37329 -24.92188 -22.03585 -21.26965 -20.85086 -20.24010 -19.55214 -17.88250 -17.26795 -16.15994 -15.30361 -15.06827 -14.86066 -14.66436 -14.34840 -14.20561 -13.46187 -13.29627 -13.09772 -12.95600 -12.76510 -12.56311 -12.28038 -12.03714 -11.83241 -11.80366 -11.22501 -11.11875 -10.96740 -10.77920 -10.56662 -10.44534 -10.37606 -9.88545 -9.52672 -9.41927 -8.81828 -8.58857 -7.85433 -7.45252 -6.44062 -6.27690 -4.42595 1.71741 2.56137 2.70960 2.93473 3.13023 3.15785 3.29299 3.35253 4.01913 4.27997 4.53782 4.62749 4.89142 4.99611 5.13900 5.15204 5.45053 5.47940 5.55585 5.59193 5.72148 5.84214 5.86756 5.98498 6.00619 6.12946 6.20946 6.37358 6.42042 6.54587 6.64370 6.91910 6.94966 7.01315 7.09552 7.30380 7.51472 7.65757 7.87450 7.97913 8.21929 8.43445 8.75633 8.85868 9.18222 10.30304 10.45866 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.021068 B = 0.003013 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.707282 B = 9291.895828 C =10125.498459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.083 3.917 3 N -0.301 5.301 4 N -0.482 5.482 5 H 0.438 0.562 6 C 0.058 3.942 7 C -0.228 4.228 8 C -0.037 4.037 9 C -0.123 4.123 10 C 0.142 3.858 11 N -0.740 5.740 12 C 0.411 3.589 13 C -0.367 4.367 14 C -0.033 4.033 15 C -0.318 4.318 16 C 0.293 3.707 17 C -0.436 4.436 18 H 0.082 0.918 19 C 0.072 3.928 20 N -0.716 5.716 21 Si 0.905 3.095 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.266 1.266 25 N -0.533 5.533 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.175 0.825 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.395 0.605 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.511 11.096 11.163 16.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 N -0.125 5.125 4 N -0.189 5.189 5 H 0.281 0.719 6 C -0.089 4.089 7 C -0.239 4.239 8 C -0.076 4.076 9 C -0.161 4.161 10 C 0.016 3.984 11 N -0.377 5.377 12 C 0.171 3.829 13 C -0.393 4.393 14 C -0.057 4.057 15 C -0.341 4.341 16 C 0.165 3.835 17 C -0.468 4.468 18 H 0.100 0.900 19 C -0.153 4.153 20 N -0.338 5.338 21 Si 0.729 3.271 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.190 1.190 25 N -0.254 5.254 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.192 0.808 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.229 0.771 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.737 13.108 10.584 17.797 hybrid contribution 0.400 -1.146 -0.337 1.260 sum 6.137 11.962 10.247 16.904 Atomic orbital electron populations 1.20233 0.86657 1.03716 1.03010 1.22309 0.97053 0.90248 0.98744 1.77258 0.86781 1.22719 1.25728 1.46155 1.07225 1.05511 1.60027 0.71869 1.22418 0.99423 0.85231 1.01800 1.20048 0.91733 0.96521 1.15593 1.19785 1.01347 0.89875 0.96602 1.21756 1.01872 0.95738 0.96767 1.21057 0.99184 0.93448 0.84737 1.44160 1.75506 1.11663 1.06332 1.18549 0.89187 0.84526 0.90632 1.20610 1.25025 0.96809 0.96824 1.20597 0.95075 0.94492 0.95533 1.21526 1.18442 1.00712 0.93449 1.18191 0.86568 0.85911 0.92783 1.19536 1.38630 0.98797 0.89827 0.89994 1.26041 0.93740 0.94585 1.00972 1.70145 1.27098 1.03331 1.33243 0.86449 0.79856 0.79007 0.81779 1.19036 1.20388 1.19050 1.68222 1.23191 1.18283 1.15750 0.90495 0.90938 0.89909 0.80758 0.91164 0.90906 0.91473 0.91648 0.93280 0.93199 0.77094 0.89177 0.88999 0.88782 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.21 36.00 0.37 -0.35 16 2 C 0.08 0.96 7.22 -82.41 -0.59 0.36 16 3 N -0.30 -3.66 12.70 33.67 0.43 -3.24 16 4 N -0.48 -4.42 7.36 30.45 0.22 -4.20 16 5 H 0.44 2.54 8.96 -182.61 -1.64 0.91 16 6 C 0.06 0.52 11.90 -17.22 -0.21 0.31 16 7 C -0.23 -2.39 5.35 -105.05 -0.56 -2.96 16 8 C -0.04 -0.36 5.33 -27.88 -0.15 -0.51 16 9 C -0.12 -1.47 5.31 -26.73 -0.14 -1.62 16 10 C 0.14 2.14 4.88 -4.04 -0.02 2.12 16 11 N -0.74 -14.93 5.72 -60.39 -0.35 -15.27 16 12 C 0.41 10.19 7.65 -155.32 -1.19 9.00 16 13 C -0.37 -8.57 9.34 -38.87 -0.36 -8.93 16 14 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 15 C -0.32 -8.20 9.83 -38.65 -0.38 -8.58 16 16 C 0.29 8.29 6.55 -85.00 -0.56 7.74 16 17 C -0.44 -11.98 9.14 -37.74 -0.34 -12.33 16 18 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 19 C 0.07 1.86 5.50 -17.35 -0.10 1.76 16 20 N -0.72 -19.30 11.46 55.55 0.64 -18.66 16 21 Si 0.90 18.95 29.56 -169.99 -5.02 13.93 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 N -0.53 -14.98 7.89 -10.33 -0.08 -15.06 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.73 7.71 -51.93 -0.40 0.33 16 29 H 0.18 0.99 8.06 -52.48 -0.42 0.57 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 32 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.74 7.91 -51.93 -0.41 0.33 16 35 H 0.05 0.75 7.93 -51.93 -0.41 0.34 16 36 H 0.39 7.99 8.59 -40.82 -0.35 7.64 16 37 H 0.09 1.86 6.68 -52.48 -0.35 1.51 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 LS Contribution 341.00 15.07 5.14 5.14 Total: -1.00 -32.89 341.00 -10.55 -43.44 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -6.90 Total: 9.05 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -4.63 Total: -15.14 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.86 Total: -56.42 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.89 -10.55 -43.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116662101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.960 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds