Wall clock time and date at job start Tue Mar 31 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30836 * 125.90192 * 2 1 4 4 N 1.40084 * 108.20904 * 180.14351 * 3 2 1 5 5 H 0.97001 * 126.04219 * 179.85882 * 4 3 2 6 6 C 1.34947 * 107.92164 * 359.58781 * 4 3 2 7 7 C 1.35317 * 107.74962 * 0.24402 * 6 4 3 8 8 C 1.50698 * 126.04222 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.46992 * 265.02374 * 8 7 6 10 10 C 1.53003 * 109.47090 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.47132 * 179.97438 * 10 9 8 12 12 C 1.38820 * 119.99929 * 180.02562 * 11 10 9 13 13 C 1.39798 * 119.58737 * 359.72694 * 12 11 10 14 14 C 1.38596 * 119.49020 * 179.76946 * 13 12 11 15 15 C 1.38390 * 118.68165 * 0.49661 * 14 13 12 16 16 C 1.40557 * 119.14851 * 359.74753 * 15 14 13 17 17 C 1.41311 * 119.78160 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00293 * 359.97438 * 17 16 15 19 19 C 1.40027 * 120.00068 * 179.97438 * 17 16 15 20 20 N 1.30738 * 119.99683 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00140 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46969 * 59.99771 * 21 19 17 23 23 H 1.48502 * 109.46794 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47095 * 299.99646 * 21 19 17 25 25 N 1.31966 * 119.58405 * 179.97438 * 12 11 10 26 26 H 1.08995 * 109.48061 * 270.30456 * 1 2 3 27 27 H 1.09003 * 109.47004 * 30.31144 * 1 2 3 28 28 H 1.09005 * 109.47121 * 150.30115 * 1 2 3 29 29 H 1.08007 * 126.12498 * 180.26712 * 6 4 3 30 30 H 1.08996 * 109.47131 * 25.02274 * 8 7 6 31 31 H 1.09002 * 109.47409 * 145.02425 * 8 7 6 32 32 H 1.08996 * 109.47101 * 299.99919 * 9 8 7 33 33 H 1.08995 * 109.47312 * 60.00009 * 9 8 7 34 34 H 1.08996 * 109.47142 * 299.99967 * 10 9 8 35 35 H 1.09000 * 109.46574 * 60.00134 * 10 9 8 36 36 H 0.97005 * 119.99897 * 359.97438 * 11 10 9 37 37 H 1.08005 * 120.24906 * 359.97438 * 13 12 11 38 38 H 1.08002 * 120.65434 * 180.24925 * 14 13 12 39 39 H 1.07997 * 120.42568 * 179.77124 * 15 14 13 40 40 H 0.97007 * 120.00543 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0033 5 1 4.3908 1.2078 -0.0060 6 6 3.6141 -0.7154 0.0039 7 6 2.3270 -1.1331 0.0061 8 6 1.8598 -2.5658 0.0143 9 6 1.5830 -3.0201 -1.4202 10 6 1.1092 -4.4749 -1.4119 11 7 0.8435 -4.9098 -2.7854 12 6 0.3994 -6.2019 -3.0307 13 6 0.2140 -7.0828 -1.9611 14 6 -0.2341 -8.3709 -2.2079 15 6 -0.4759 -8.7508 -3.5165 16 6 -0.2656 -7.8208 -4.5493 17 6 -0.5089 -8.1943 -5.8903 18 1 -0.8548 -9.1915 -6.1189 19 6 -0.3014 -7.2714 -6.9227 20 7 0.1169 -6.0640 -6.6459 21 14 -0.6222 -7.7652 -8.6955 22 1 -2.0451 -8.1616 -8.8491 23 1 -0.3295 -6.6166 -9.5900 24 1 0.2523 -8.9099 -9.0565 25 7 0.1621 -6.5848 -4.2711 26 1 -0.3635 0.0055 1.0275 27 1 -0.3633 0.8872 -0.5187 28 1 -0.3634 -0.8927 -0.5092 29 1 4.4891 -1.3486 0.0077 30 1 2.6323 -3.1974 0.4528 31 1 0.9464 -2.6467 0.6037 32 1 0.8104 -2.3885 -1.8587 33 1 2.4962 -2.9392 -2.0096 34 1 1.8820 -5.1062 -0.9736 35 1 0.1960 -4.5562 -0.8224 36 1 0.9773 -4.2946 -3.5234 37 1 0.4153 -6.7609 -0.9500 38 1 -0.3876 -9.0657 -1.3954 39 1 -0.8221 -9.7487 -3.7412 40 1 0.2603 -5.4244 -7.3611 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116662101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:06 Heat of formation + Delta-G solvation = 75.294939 kcal Electronic energy + Delta-G solvation = -21089.756622 eV Core-core repulsion = 17904.500065 eV Total energy + Delta-G solvation = -3185.256557 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.14603 -40.07732 -37.40941 -35.50413 -34.60609 -33.44841 -32.25703 -31.30736 -29.64836 -28.76055 -27.25165 -26.07678 -23.56826 -22.70561 -21.94591 -21.73217 -20.32404 -19.23188 -18.57721 -17.90467 -16.61278 -16.41333 -16.31515 -15.93999 -15.81034 -15.15500 -15.05572 -14.67792 -14.45464 -14.01957 -13.84067 -13.64080 -13.61158 -13.14774 -13.03651 -12.89519 -12.75432 -12.70631 -12.58711 -12.28233 -12.07561 -11.75052 -11.72036 -11.30650 -11.19472 -10.59346 -10.29768 -9.79283 -9.41489 -9.34004 -8.23266 -8.19660 -6.44883 0.98988 1.10512 1.38770 1.42570 1.54534 1.61548 1.77414 2.07865 2.26878 2.77409 2.95814 3.77575 3.97354 4.07208 4.10900 4.22693 4.41144 4.47567 4.54874 4.61335 4.72090 4.75514 4.82176 4.87497 4.97846 5.04425 5.04581 5.06364 5.10843 5.13789 5.18833 5.37859 5.45741 5.48736 5.76008 5.79495 6.01030 6.12553 6.26098 6.49967 6.61930 6.76865 6.87600 7.00607 7.27131 8.38688 8.54579 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.021068 B = 0.003013 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.707282 B = 9291.895828 C =10125.498459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.068 3.932 3 N -0.339 5.339 4 N -0.476 5.476 5 H 0.450 0.550 6 C 0.070 3.930 7 C -0.251 4.251 8 C -0.026 4.026 9 C -0.109 4.109 10 C 0.140 3.860 11 N -0.736 5.736 12 C 0.392 3.608 13 C -0.365 4.365 14 C -0.031 4.031 15 C -0.347 4.347 16 C 0.258 3.742 17 C -0.474 4.474 18 H 0.086 0.914 19 C 0.026 3.974 20 N -0.752 5.752 21 Si 0.985 3.015 22 H -0.260 1.260 23 H -0.269 1.269 24 H -0.260 1.260 25 N -0.568 5.568 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.209 0.791 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.391 0.609 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.101 0.899 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.247 11.091 12.009 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 N -0.164 5.164 4 N -0.185 5.185 5 H 0.297 0.703 6 C -0.078 4.078 7 C -0.262 4.262 8 C -0.065 4.065 9 C -0.147 4.147 10 C 0.016 3.984 11 N -0.371 5.371 12 C 0.152 3.848 13 C -0.391 4.391 14 C -0.055 4.055 15 C -0.370 4.370 16 C 0.131 3.869 17 C -0.506 4.506 18 H 0.104 0.896 19 C -0.196 4.196 20 N -0.375 5.375 21 Si 0.806 3.194 22 H -0.184 1.184 23 H -0.193 1.193 24 H -0.184 1.184 25 N -0.291 5.291 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.226 0.774 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.225 0.775 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.119 0.881 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.489 13.140 11.481 18.617 hybrid contribution 0.239 -1.080 -0.445 1.193 sum 6.729 12.060 11.036 17.678 Atomic orbital electron populations 1.20281 0.85871 1.03672 1.03787 1.22678 0.97944 0.90603 0.98558 1.77195 0.88143 1.23725 1.27347 1.46223 1.06931 1.06094 1.59225 0.70345 1.22974 1.00102 0.85243 0.99507 1.20200 0.92365 0.96485 1.17183 1.19690 1.02183 0.89799 0.94861 1.21631 1.01240 0.93389 0.98451 1.21313 0.99677 0.95376 0.82058 1.44409 1.74343 1.10033 1.08334 1.19034 0.89056 0.86383 0.90371 1.20977 1.23711 0.96521 0.97882 1.21025 0.93494 0.95263 0.95687 1.21691 1.20071 1.00941 0.94261 1.18678 0.87358 0.86846 0.94023 1.19904 1.40279 0.99647 0.90730 0.89622 1.26953 0.92924 0.94228 1.05474 1.70248 1.27831 1.04430 1.34949 0.85229 0.79809 0.78855 0.75527 1.18442 1.19343 1.18414 1.68193 1.24540 1.18679 1.17702 0.89282 0.91133 0.89757 0.77407 0.89607 0.90358 0.92258 0.91974 0.92531 0.92674 0.77535 0.86080 0.85233 0.88057 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.21 71.23 0.73 -0.65 16 2 C 0.07 1.50 7.22 43.10 0.31 1.81 16 3 N -0.34 -8.00 12.70 -47.39 -0.60 -8.61 16 4 N -0.48 -7.95 7.36 -57.59 -0.42 -8.37 16 5 H 0.45 4.49 8.96 -213.33 -1.91 2.58 16 6 C 0.07 1.06 11.90 83.54 0.99 2.05 16 7 C -0.25 -4.79 5.35 -20.14 -0.11 -4.90 16 8 C -0.03 -0.45 5.33 29.85 0.16 -0.29 16 9 C -0.11 -2.42 5.31 30.60 0.16 -2.26 16 10 C 0.14 3.97 4.88 86.38 0.42 4.39 16 11 N -0.74 -29.36 5.72 -344.98 -1.97 -31.34 16 12 C 0.39 19.44 7.65 133.42 1.02 20.46 16 13 C -0.37 -16.49 9.34 22.73 0.21 -16.28 16 14 C -0.03 -1.39 10.15 22.39 0.23 -1.17 16 15 C -0.35 -18.03 9.83 22.87 0.22 -17.80 16 16 C 0.26 15.04 6.55 40.18 0.26 15.30 16 17 C -0.47 -26.80 9.14 23.46 0.21 -26.58 16 18 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 19 C 0.03 1.36 5.50 85.29 0.47 1.83 16 20 N -0.75 -41.48 11.46 21.84 0.25 -41.23 16 21 Si 0.99 39.26 29.56 68.60 2.03 41.29 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 25 N -0.57 -32.68 7.89 -186.59 -1.47 -34.15 16 26 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.43 7.71 -2.38 -0.02 1.41 16 29 H 0.21 1.58 8.06 -2.91 -0.02 1.55 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 32 H 0.06 1.42 7.88 -2.39 -0.02 1.40 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.55 7.91 -2.39 -0.02 1.53 16 35 H 0.06 1.54 7.93 -2.39 -0.02 1.52 16 36 H 0.39 15.98 8.59 -92.70 -0.80 15.18 16 37 H 0.12 4.62 6.68 -2.91 -0.02 4.60 16 38 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 40 H 0.28 13.75 8.29 -92.70 -0.77 12.98 16 Total: -1.00 -72.67 341.00 1.47 -71.20 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: -1.64 Total: 35.30 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 5.30 Total: -24.09 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -4.22 Total: -123.70 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -72.67 1.47 -71.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116662101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.499 kcal (2) G-P(sol) polarization free energy of solvation -72.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds