Wall clock time and date at job start Tue Mar 31 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00376 * 2 1 4 4 C 1.50706 * 109.46965 * 66.04797 * 3 2 1 5 5 H 1.07997 * 120.00161 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99920 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00315 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99846 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.46877 * 60.00484 * 8 6 4 10 10 H 1.48504 * 109.47181 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47389 * 300.00366 * 8 6 4 12 12 C 1.46900 * 110.99682 * 236.04719 * 2 1 3 13 13 C 1.50706 * 109.47274 * 293.95446 * 12 2 1 14 14 C 1.35344 * 126.74898 * 95.30044 * 13 12 2 15 15 N 1.35314 * 106.17629 * 180.12906 * 14 13 12 16 16 C 1.46499 * 125.87064 * 179.90465 * 15 14 13 17 17 C 1.50693 * 109.47329 * 124.71100 * 16 15 14 18 18 C 1.38233 * 120.00207 * 89.99403 * 17 16 15 19 19 C 1.38234 * 120.00037 * 179.72405 * 18 17 16 20 20 C 1.38234 * 120.00240 * 0.26327 * 19 18 17 21 21 C 1.38238 * 119.99693 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00067 * 0.02562 * 21 20 19 23 23 N 1.28713 * 108.25946 * 359.63531 * 15 14 13 24 24 N 1.28639 * 110.18191 * 0.22968 * 23 15 14 25 25 H 1.08997 * 109.47255 * 183.95375 * 1 2 3 26 26 H 1.08998 * 109.46877 * 303.95416 * 1 2 3 27 27 H 1.09005 * 109.46622 * 63.94777 * 1 2 3 28 28 H 1.09002 * 109.47230 * 186.04407 * 3 2 1 29 29 H 1.08996 * 109.47582 * 306.04534 * 3 2 1 30 30 H 0.97003 * 120.00641 * 180.02562 * 7 6 4 31 31 H 1.09006 * 109.47059 * 173.95406 * 12 2 1 32 32 H 1.09002 * 109.47638 * 53.95744 * 12 2 1 33 33 H 1.08006 * 126.91642 * 0.02562 * 14 13 12 34 34 H 1.09000 * 109.46981 * 4.71089 * 16 15 14 35 35 H 1.09001 * 109.46676 * 244.70903 * 16 15 14 36 36 H 1.08002 * 120.00157 * 0.02562 * 18 17 16 37 37 H 1.07999 * 120.00009 * 180.28389 * 19 18 17 38 38 H 1.07997 * 120.00460 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.99624 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.00008 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0747 1.5112 2.0489 6 6 2.0279 3.3490 1.5290 7 7 2.7130 4.0015 0.6155 8 14 1.5829 4.1868 3.1382 9 1 2.1738 3.4290 4.2706 10 1 2.1164 5.5727 3.1389 11 1 0.1057 4.2243 3.2849 12 6 1.9954 -0.7660 -1.1376 13 6 1.6368 -2.2205 -0.9729 14 6 0.5693 -2.8570 -1.5088 15 7 0.6499 -4.1426 -1.0942 16 6 -0.2955 -5.2119 -1.4245 17 6 0.4483 -6.3656 -2.0462 18 6 0.9527 -7.3741 -1.2466 19 6 1.6300 -8.4354 -1.8175 20 6 1.8076 -8.4854 -3.1875 21 6 1.3074 -7.4744 -3.9866 22 6 0.6302 -6.4132 -3.4158 23 7 1.7030 -4.2658 -0.3645 24 7 2.3137 -3.1373 -0.2726 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4514 -0.9233 28 1 3.0798 1.3443 -0.1082 29 1 1.5613 1.9273 -0.8309 30 1 2.9884 4.9173 0.7778 31 1 3.0797 -0.6611 -1.1757 32 1 1.5611 -0.3872 -2.0629 33 1 -0.1943 -2.4254 -2.1390 34 1 -1.0375 -4.8360 -2.1290 35 1 -0.7948 -5.5487 -0.5160 36 1 0.8135 -7.3354 -0.1763 37 1 2.0201 -9.2256 -1.1932 38 1 2.3364 -9.3147 -3.6336 39 1 1.4459 -7.5138 -5.0570 40 1 0.2390 -5.6235 -4.0402 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139485822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:17 Heat of formation + Delta-G solvation = 133.595628 kcal Electronic energy + Delta-G solvation = -21302.174701 eV Core-core repulsion = 18119.446252 eV Total energy + Delta-G solvation = -3182.728449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.02562 -39.59254 -36.67126 -35.01691 -32.65511 -31.58383 -31.30118 -31.03202 -27.47059 -27.13236 -26.62577 -23.95207 -22.97146 -22.57540 -21.57254 -20.93535 -19.93979 -17.48125 -17.02378 -16.38585 -16.27430 -15.54308 -15.30593 -14.88017 -14.67978 -14.14958 -14.04083 -13.80769 -13.69735 -13.43615 -13.03068 -12.93975 -12.36025 -11.90827 -11.66892 -11.53382 -11.41422 -11.29163 -11.09559 -10.86191 -10.69973 -10.44239 -10.40238 -9.91362 -9.77981 -9.28648 -9.27171 -9.21184 -8.89277 -8.38321 -7.19440 -5.97970 -3.98782 0.79820 1.04817 1.78586 2.48931 2.86931 3.37473 3.41175 3.45040 3.48358 4.04269 4.25503 4.47481 4.56526 4.62259 4.71072 4.74826 4.88641 5.06743 5.12280 5.18998 5.22368 5.37511 5.47341 5.53528 5.64606 5.70627 6.02960 6.05585 6.13083 6.14843 6.21015 6.21921 6.37707 6.49890 6.59035 6.71584 6.75981 7.32669 7.36117 7.84262 8.12754 8.23962 8.58576 8.81606 9.08237 9.64892 11.12930 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.044818 B = 0.002696 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.592580 B =10384.109344 C =10485.578666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.533 5.533 3 C 0.194 3.806 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.135 3.865 13 C 0.011 3.989 14 C -0.057 4.057 15 N -0.295 5.295 16 C 0.161 3.839 17 C -0.116 4.116 18 C -0.080 4.080 19 C -0.123 4.123 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.097 4.097 23 N -0.088 5.088 24 N -0.251 5.251 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.011 0.989 28 H 0.033 0.967 29 H -0.007 1.007 30 H 0.261 0.739 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.184 0.816 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.877 -23.725 -10.622 27.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.258 5.258 3 C 0.069 3.931 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.204 1.204 12 C 0.005 3.995 13 C -0.127 4.127 14 C -0.208 4.208 15 N -0.089 5.089 16 C 0.040 3.960 17 C -0.116 4.116 18 C -0.099 4.099 19 C -0.141 4.141 20 C -0.126 4.126 21 C -0.143 4.143 22 C -0.116 4.116 23 N -0.067 5.067 24 N -0.118 5.118 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.029 0.971 28 H 0.051 0.949 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.201 0.799 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.791 -24.729 -9.378 27.305 hybrid contribution -1.262 1.576 -0.618 2.111 sum -8.052 -23.153 -9.995 26.473 Atomic orbital electron populations 1.22219 0.89040 0.99261 1.00494 1.62038 1.06850 1.17693 1.39232 1.19750 0.95608 0.81013 0.96709 1.21117 1.34801 0.96825 1.01678 0.91937 1.24976 0.95332 0.97334 0.96963 1.69945 1.38383 1.11510 1.34089 0.86557 0.78609 0.78292 0.83920 1.20138 1.21380 1.20352 1.20285 1.01196 0.84896 0.93124 1.22065 0.93941 0.97907 0.98788 1.23351 1.04309 0.84902 1.08220 1.47316 1.19424 1.08458 1.33686 1.20853 0.88789 0.84241 1.02141 1.19691 1.01941 0.96018 0.93993 1.21103 0.95780 0.93090 0.99934 1.21190 0.99179 0.98580 0.95140 1.21262 0.98734 0.98615 0.93989 1.21140 0.98624 0.94462 1.00077 1.21066 0.98311 0.98155 0.94046 1.78272 0.96172 1.19779 1.12458 1.75109 1.23544 0.95357 1.17767 0.94063 0.90708 0.97068 0.94927 0.98971 0.92897 0.89503 0.94125 0.79860 0.87034 0.87671 0.85456 0.85634 0.85861 0.85779 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.15 60.06 0.55 1.31 16 2 N -0.53 -12.02 4.74 -245.82 -1.17 -13.18 16 3 C 0.19 5.14 4.72 -4.98 -0.02 5.12 16 4 C -0.51 -14.50 8.46 -34.44 -0.29 -14.79 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.41 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 C 0.14 2.57 5.53 -4.97 -0.03 2.54 16 13 C 0.01 0.20 5.96 -82.78 -0.49 -0.29 16 14 C -0.06 -0.77 10.54 -17.05 -0.18 -0.95 16 15 N -0.29 -3.81 3.43 -62.45 -0.21 -4.03 16 16 C 0.16 1.31 6.58 -5.20 -0.03 1.28 16 17 C -0.12 -1.02 5.25 -104.63 -0.55 -1.57 16 18 C -0.08 -0.72 9.70 -39.58 -0.38 -1.10 16 19 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 20 C -0.11 -0.82 10.05 -39.58 -0.40 -1.21 16 21 C -0.13 -0.96 10.05 -39.58 -0.40 -1.36 16 22 C -0.10 -0.80 9.70 -39.58 -0.38 -1.18 16 23 N -0.09 -1.47 12.92 60.35 0.78 -0.69 16 24 N -0.25 -4.89 12.41 33.29 0.41 -4.48 16 25 H 0.04 0.72 6.58 -51.93 -0.34 0.38 16 26 H 0.07 1.60 6.76 -51.93 -0.35 1.25 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.03 0.92 7.93 -51.93 -0.41 0.51 16 29 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.09 1.71 7.93 -51.93 -0.41 1.30 16 32 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 33 H 0.18 1.79 8.06 -52.48 -0.42 1.36 16 34 H 0.11 0.57 8.01 -51.93 -0.42 0.15 16 35 H 0.11 0.71 8.09 -51.93 -0.42 0.29 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -34.61 342.30 -8.09 -42.70 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -5.66 Total: -4.09 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -3.11 Total: -12.12 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.55 Total: -48.65 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.61 -8.09 -42.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139485822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.292 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds