Wall clock time and date at job start Tue Mar 31 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00376 * 2 1 4 4 C 1.50706 * 109.46965 * 66.04797 * 3 2 1 5 5 H 1.07997 * 120.00161 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99920 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00315 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99846 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.46877 * 60.00484 * 8 6 4 10 10 H 1.48504 * 109.47181 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47389 * 300.00366 * 8 6 4 12 12 C 1.46900 * 110.99682 * 236.04719 * 2 1 3 13 13 C 1.50706 * 109.47274 * 293.95446 * 12 2 1 14 14 C 1.35344 * 126.74898 * 95.30044 * 13 12 2 15 15 N 1.35314 * 106.17629 * 180.12906 * 14 13 12 16 16 C 1.46499 * 125.87064 * 179.90465 * 15 14 13 17 17 C 1.50693 * 109.47329 * 124.71100 * 16 15 14 18 18 C 1.38233 * 120.00207 * 89.99403 * 17 16 15 19 19 C 1.38234 * 120.00037 * 179.72405 * 18 17 16 20 20 C 1.38234 * 120.00240 * 0.26327 * 19 18 17 21 21 C 1.38238 * 119.99693 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00067 * 0.02562 * 21 20 19 23 23 N 1.28713 * 108.25946 * 359.63531 * 15 14 13 24 24 N 1.28639 * 110.18191 * 0.22968 * 23 15 14 25 25 H 1.08997 * 109.47255 * 183.95375 * 1 2 3 26 26 H 1.08998 * 109.46877 * 303.95416 * 1 2 3 27 27 H 1.09005 * 109.46622 * 63.94777 * 1 2 3 28 28 H 1.09002 * 109.47230 * 186.04407 * 3 2 1 29 29 H 1.08996 * 109.47582 * 306.04534 * 3 2 1 30 30 H 0.97003 * 120.00641 * 180.02562 * 7 6 4 31 31 H 1.09006 * 109.47059 * 173.95406 * 12 2 1 32 32 H 1.09002 * 109.47638 * 53.95744 * 12 2 1 33 33 H 1.08006 * 126.91642 * 0.02562 * 14 13 12 34 34 H 1.09000 * 109.46981 * 4.71089 * 16 15 14 35 35 H 1.09001 * 109.46676 * 244.70903 * 16 15 14 36 36 H 1.08002 * 120.00157 * 0.02562 * 18 17 16 37 37 H 1.07999 * 120.00009 * 180.28389 * 19 18 17 38 38 H 1.07997 * 120.00460 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.99624 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.00008 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0747 1.5112 2.0489 6 6 2.0279 3.3490 1.5290 7 7 2.7130 4.0015 0.6155 8 14 1.5829 4.1868 3.1382 9 1 2.1738 3.4290 4.2706 10 1 2.1164 5.5727 3.1389 11 1 0.1057 4.2243 3.2849 12 6 1.9954 -0.7660 -1.1376 13 6 1.6368 -2.2205 -0.9729 14 6 0.5693 -2.8570 -1.5088 15 7 0.6499 -4.1426 -1.0942 16 6 -0.2955 -5.2119 -1.4245 17 6 0.4483 -6.3656 -2.0462 18 6 0.9527 -7.3741 -1.2466 19 6 1.6300 -8.4354 -1.8175 20 6 1.8076 -8.4854 -3.1875 21 6 1.3074 -7.4744 -3.9866 22 6 0.6302 -6.4132 -3.4158 23 7 1.7030 -4.2658 -0.3645 24 7 2.3137 -3.1373 -0.2726 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4514 -0.9233 28 1 3.0798 1.3443 -0.1082 29 1 1.5613 1.9273 -0.8309 30 1 2.9884 4.9173 0.7778 31 1 3.0797 -0.6611 -1.1757 32 1 1.5611 -0.3872 -2.0629 33 1 -0.1943 -2.4254 -2.1390 34 1 -1.0375 -4.8360 -2.1290 35 1 -0.7948 -5.5487 -0.5160 36 1 0.8135 -7.3354 -0.1763 37 1 2.0201 -9.2256 -1.1932 38 1 2.3364 -9.3147 -3.6336 39 1 1.4459 -7.5138 -5.0570 40 1 0.2390 -5.6235 -4.0402 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139485822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:17 Heat of formation + Delta-G solvation = 110.596368 kcal Electronic energy + Delta-G solvation = -21303.172024 eV Core-core repulsion = 18119.446252 eV Total energy + Delta-G solvation = -3183.725772 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.17650 -40.18356 -38.35456 -35.98024 -34.72385 -32.50466 -32.36799 -31.84154 -29.25395 -28.43406 -27.77463 -25.79118 -23.59316 -23.45978 -22.89266 -22.23696 -21.24463 -18.59655 -18.21831 -17.82757 -17.25685 -16.75487 -16.19134 -16.15006 -15.98480 -15.62165 -15.57504 -15.26266 -14.35861 -14.26358 -14.10517 -13.80989 -13.62830 -13.44332 -13.28522 -12.98122 -12.65159 -12.59843 -12.51476 -12.28579 -12.20822 -11.99115 -11.91480 -11.58237 -11.33490 -10.95280 -10.59334 -10.13763 -9.87255 -9.85657 -8.95438 -8.17904 -6.27610 0.17063 0.45813 0.71133 1.41605 1.45578 1.52230 1.55728 1.66017 2.42711 2.87401 3.14295 3.30763 3.52486 3.53587 3.72388 4.01300 4.06878 4.10782 4.21161 4.23776 4.33666 4.45256 4.54767 4.58318 4.67355 4.67791 4.78745 4.95105 5.00530 5.09615 5.09941 5.17738 5.22637 5.33491 5.48375 5.54755 5.57022 5.66561 5.72984 6.03292 6.07471 6.37329 6.64439 6.87675 7.41453 7.61824 8.92741 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.044818 B = 0.002696 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.592580 B =10384.109344 C =10485.578666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.552 5.552 3 C 0.210 3.790 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.003 3.997 7 N -0.933 5.933 8 Si 0.968 3.032 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.265 1.265 12 C 0.141 3.859 13 C -0.020 4.020 14 C -0.028 4.028 15 N -0.279 5.279 16 C 0.151 3.849 17 C -0.128 4.128 18 C -0.099 4.099 19 C -0.136 4.136 20 C -0.115 4.115 21 C -0.135 4.135 22 C -0.106 4.106 23 N -0.108 5.108 24 N -0.302 5.302 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.026 0.974 28 H 0.002 0.998 29 H -0.026 1.026 30 H 0.265 0.735 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.230 0.770 34 H 0.152 0.848 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 -24.693 -11.334 28.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.276 5.276 3 C 0.084 3.916 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.195 4.195 7 N -0.573 5.573 8 Si 0.793 3.207 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.190 1.190 12 C 0.011 3.989 13 C -0.159 4.159 14 C -0.180 4.180 15 N -0.073 5.073 16 C 0.033 3.967 17 C -0.129 4.129 18 C -0.117 4.117 19 C -0.154 4.154 20 C -0.133 4.133 21 C -0.153 4.153 22 C -0.124 4.124 23 N -0.087 5.087 24 N -0.168 5.168 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.020 0.980 29 H -0.008 1.008 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.246 0.754 34 H 0.170 0.830 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.959 -25.752 -10.090 29.073 hybrid contribution -0.615 1.724 -0.490 1.895 sum -9.575 -24.028 -10.580 27.945 Atomic orbital electron populations 1.22164 0.87152 1.00667 1.00296 1.61894 1.08683 1.15332 1.41732 1.19372 0.93677 0.83240 0.95329 1.21420 1.34960 0.97440 1.02430 0.92306 1.25878 0.95027 0.98004 1.00625 1.70067 1.39218 1.11934 1.36121 0.85461 0.78926 0.77170 0.79193 1.19859 1.20639 1.18984 1.20159 1.00011 0.85927 0.92771 1.21889 0.95999 0.97007 1.01007 1.23845 1.03223 0.84509 1.06427 1.47713 1.18606 1.09353 1.31635 1.21383 0.88301 0.83120 1.03936 1.19807 1.02496 0.96214 0.94387 1.21290 0.96446 0.93844 1.00157 1.21453 0.99217 0.98884 0.95830 1.21580 0.98536 0.99269 0.93901 1.21475 0.98281 0.94328 1.01204 1.21362 0.98224 0.98781 0.94073 1.78182 0.97662 1.18976 1.13874 1.75045 1.25542 0.96593 1.19630 0.91383 0.92844 0.95530 0.98033 1.00805 0.92638 0.91677 0.91790 0.75384 0.83008 0.86232 0.85603 0.84406 0.83975 0.83953 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.73 9.15 127.69 1.17 2.90 16 2 N -0.55 -25.04 4.74 -931.63 -4.42 -29.46 16 3 C 0.21 11.47 4.72 85.56 0.40 11.88 16 4 C -0.52 -30.59 8.46 25.60 0.22 -30.37 16 5 H 0.06 3.40 7.12 -2.91 -0.02 3.38 16 6 C 0.00 0.16 5.46 84.66 0.46 0.62 16 7 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 8 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 9 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 C 0.14 5.35 5.53 85.56 0.47 5.83 16 13 C -0.02 -0.67 5.96 41.60 0.25 -0.42 16 14 C -0.03 -0.67 10.54 83.49 0.88 0.21 16 15 N -0.28 -6.49 3.43 -351.48 -1.21 -7.70 16 16 C 0.15 1.97 6.58 85.63 0.56 2.53 16 17 C -0.13 -2.00 5.25 -19.87 -0.10 -2.10 16 18 C -0.10 -1.67 9.70 22.27 0.22 -1.45 16 19 C -0.14 -2.06 10.05 22.27 0.22 -1.84 16 20 C -0.11 -1.56 10.05 22.27 0.22 -1.33 16 21 C -0.14 -1.80 10.05 22.27 0.22 -1.58 16 22 C -0.11 -1.48 9.70 22.27 0.22 -1.26 16 23 N -0.11 -3.55 12.92 37.02 0.48 -3.07 16 24 N -0.30 -11.83 12.41 -48.60 -0.60 -12.43 16 25 H 0.07 2.21 6.58 -2.39 -0.02 2.19 16 26 H 0.05 2.25 6.76 -2.39 -0.02 2.23 16 27 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.00 0.09 7.93 -2.39 -0.02 0.07 16 29 H -0.03 -1.47 8.12 -2.39 -0.02 -1.48 16 30 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.06 2.69 7.93 -2.38 -0.02 2.67 16 32 H 0.06 2.10 8.12 -2.39 -0.02 2.08 16 33 H 0.23 3.15 8.06 -2.91 -0.02 3.12 16 34 H 0.15 0.76 8.01 -2.39 -0.02 0.74 16 35 H 0.12 1.26 8.09 -2.39 -0.02 1.24 16 36 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -77.36 342.30 3.00 -74.37 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.02 Total: 4.00 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 5.41 Total: -16.40 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -5.47 Total: -109.24 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -77.36 3.00 -74.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139485822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.964 kcal (2) G-P(sol) polarization free energy of solvation -77.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds