Wall clock time and date at job start Tue Mar 31 2020 05:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30505 * 125.64398 * 2 1 4 4 C 1.34133 * 109.25480 * 180.02562 * 3 2 1 5 5 C 1.34671 * 108.01704 * 359.73309 * 4 3 2 6 6 N 1.35039 * 125.65571 * 180.02562 * 2 1 3 7 7 C 1.46503 * 126.39635 * 359.95844 * 6 2 1 8 8 C 1.53000 * 109.46872 * 85.00080 * 7 6 2 9 9 N 1.46503 * 109.46872 * 179.97438 * 8 7 6 10 10 C 1.38367 * 119.99933 * 180.02562 * 9 8 7 11 11 C 1.39710 * 119.43206 * 0.02562 * 10 9 8 12 12 C 1.36558 * 119.49569 * 179.97438 * 11 10 9 13 13 C 1.41331 * 118.40923 * 359.97438 * 12 11 10 14 14 C 1.41199 * 120.57013 * 180.27645 * 13 12 11 15 15 H 1.08005 * 119.99655 * 154.59933 * 14 13 12 16 16 C 1.39873 * 120.00071 * 334.59455 * 14 13 12 17 17 N 1.30906 * 119.99751 * 344.03440 * 16 14 13 18 18 Si 1.86796 * 119.99856 * 164.02997 * 16 14 13 19 19 H 1.48508 * 109.46783 * 60.00485 * 18 16 14 20 20 H 1.48501 * 109.46756 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47382 * 300.00447 * 18 16 14 22 22 C 1.40751 * 118.85610 * 359.97438 * 13 12 11 23 23 C 1.50700 * 119.81525 * 180.02562 * 22 13 12 24 24 N 1.31484 * 120.37162 * 0.02562 * 22 13 12 25 25 H 1.09003 * 109.47122 * 269.94889 * 1 2 3 26 26 H 1.08990 * 109.47444 * 29.95603 * 1 2 3 27 27 H 1.09005 * 109.46842 * 149.95793 * 1 2 3 28 28 H 1.07994 * 125.99296 * 180.02562 * 4 3 2 29 29 H 1.08005 * 126.59451 * 180.28156 * 5 4 3 30 30 H 1.09005 * 109.46775 * 325.00444 * 7 6 2 31 31 H 1.09000 * 109.47234 * 205.00309 * 7 6 2 32 32 H 1.08999 * 109.46949 * 60.00952 * 8 7 6 33 33 H 1.09000 * 109.47378 * 300.00141 * 8 7 6 34 34 H 0.97003 * 119.99948 * 0.02562 * 9 8 7 35 35 H 1.08000 * 120.25242 * 359.95681 * 11 10 9 36 36 H 1.07998 * 120.79988 * 180.02562 * 12 11 10 37 37 H 0.96996 * 119.99679 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.47600 * 90.00165 * 23 22 13 39 39 H 1.08998 * 109.47181 * 209.99902 * 23 22 13 40 40 H 1.08996 * 109.47303 * 329.99963 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0606 0.0000 4 6 3.5543 0.6821 -0.0006 5 6 3.5926 -0.6641 0.0050 6 7 2.2942 -1.0972 -0.0005 7 6 1.8427 -2.4910 -0.0003 8 6 1.5651 -2.9373 -1.4371 9 7 1.1143 -4.3313 -1.4370 10 6 0.8017 -4.9574 -2.6306 11 6 0.9207 -4.2493 -3.8291 12 6 0.6131 -4.8662 -5.0079 13 6 0.1819 -6.2116 -4.9702 14 6 -0.1424 -6.8954 -6.1623 15 1 -0.0707 -7.9722 -6.2037 16 6 -0.5567 -6.1781 -7.2894 17 7 -0.9442 -4.9337 -7.1673 18 14 -0.5568 -6.9960 -8.9688 19 1 -1.4570 -8.1769 -8.9442 20 1 -1.0351 -6.0296 -9.9899 21 1 0.8219 -7.4315 -9.3074 22 6 0.0876 -6.8601 -3.7246 23 6 -0.3692 -8.2947 -3.6594 24 7 0.3958 -6.2212 -2.6175 25 1 -0.3633 -0.0009 1.0277 26 1 -0.3634 0.8903 -0.5131 27 1 -0.3633 -0.8897 -0.5145 28 1 4.4098 1.3413 -0.0003 29 1 4.4777 -1.2830 0.0104 30 1 0.9302 -2.5772 0.5897 31 1 2.6170 -3.1237 0.4336 32 1 2.4777 -2.8512 -2.0270 33 1 0.7908 -2.3046 -1.8710 34 1 1.0349 -4.8152 -0.6000 35 1 1.2533 -3.2218 -3.8232 36 1 0.6979 -4.3389 -5.9466 37 1 -1.2312 -4.4362 -7.9490 38 1 0.4949 -8.9550 -3.7335 39 1 -0.8807 -8.4705 -2.7130 40 1 -1.0523 -8.4964 -4.4845 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156009661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:20 Heat of formation + Delta-G solvation = 88.427518 kcal Electronic energy + Delta-G solvation = -21493.805364 eV Core-core repulsion = 18309.118278 eV Total energy + Delta-G solvation = -3184.687085 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.17752 -38.77752 -36.30517 -34.25734 -33.28183 -31.82207 -31.16497 -30.45768 -28.17046 -26.94842 -26.82209 -24.34780 -23.33023 -21.48756 -21.31250 -20.03242 -19.75256 -17.41178 -17.19799 -16.43213 -15.61339 -15.32877 -15.17783 -14.94396 -14.23293 -13.92133 -13.70805 -13.52374 -13.14960 -13.10618 -12.98620 -12.63839 -12.40956 -12.10811 -11.99268 -11.82015 -11.64017 -11.42343 -11.20020 -11.15415 -10.88493 -10.59411 -10.04837 -9.75786 -9.71737 -9.42364 -8.75900 -8.42555 -8.22525 -8.08034 -6.89207 -6.66386 -4.24495 1.93457 2.56117 2.68285 2.92915 3.05681 3.07746 3.08255 3.24346 3.91638 4.01879 4.41568 4.44234 4.64805 4.67485 4.75990 5.02271 5.19775 5.32067 5.39702 5.56704 5.62477 5.69925 5.74721 5.82303 5.95894 6.22456 6.32887 6.41641 6.46301 6.64421 6.68059 6.75301 6.99982 7.07665 7.16600 7.30732 7.39571 7.65050 7.84697 8.02994 8.15357 8.33991 8.55568 8.79652 8.84693 9.65019 10.19124 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.003290 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.035155 B = 8509.359583 C = 9166.086791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.208 3.792 3 N -0.495 5.495 4 C -0.031 4.031 5 C -0.057 4.057 6 N -0.451 5.451 7 C 0.095 3.905 8 C 0.134 3.866 9 N -0.743 5.743 10 C 0.278 3.722 11 C -0.205 4.205 12 C -0.093 4.093 13 C 0.037 3.963 14 C -0.453 4.453 15 H 0.081 0.919 16 C 0.073 3.927 17 N -0.804 5.804 18 Si 0.908 3.092 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.265 1.265 22 C 0.035 3.965 23 C -0.070 4.070 24 N -0.517 5.517 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.169 0.831 29 H 0.174 0.826 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.390 0.610 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.280 0.720 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.283 5.297 10.049 12.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.054 4.054 3 N -0.214 5.214 4 C -0.179 4.179 5 C -0.189 4.189 6 N -0.134 5.134 7 C -0.028 4.028 8 C 0.007 3.993 9 N -0.385 5.385 10 C 0.046 3.954 11 C -0.228 4.228 12 C -0.119 4.119 13 C 0.032 3.968 14 C -0.484 4.484 15 H 0.099 0.901 16 C -0.143 4.143 17 N -0.431 5.431 18 Si 0.733 3.267 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.189 1.189 22 C -0.104 4.104 23 C -0.128 4.128 24 N -0.233 5.233 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.186 0.814 29 H 0.191 0.809 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.223 0.777 35 H 0.113 0.887 36 H 0.145 0.855 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.826 5.871 10.572 12.683 hybrid contribution 0.498 -0.740 -1.361 1.627 sum 4.324 5.131 9.211 11.396 Atomic orbital electron populations 1.20239 0.84963 1.04469 1.03418 1.23344 0.95768 0.81299 1.04971 1.70252 1.02302 1.28301 1.20589 1.22264 0.94788 0.92763 1.08039 1.22730 0.87051 0.96909 1.12243 1.45282 1.06598 1.07072 1.54448 1.21997 1.02414 0.79435 0.98988 1.21214 0.99730 0.84375 0.94017 1.43292 1.78445 1.10507 1.06211 1.17546 1.03352 0.89557 0.84924 1.20783 1.09807 0.99278 0.92973 1.21291 0.97950 0.95984 0.96701 1.18168 0.93037 0.92653 0.92911 1.19338 1.39605 0.94903 0.94535 0.90140 1.25880 0.92613 0.94731 1.01082 1.69803 1.31296 1.09981 1.31996 0.86363 0.79691 0.79799 0.80851 1.19002 1.20444 1.18940 1.20722 1.05937 0.96348 0.87415 1.20249 0.99797 0.91771 1.00953 1.66262 1.16486 1.07711 1.32842 0.90272 0.89106 0.90429 0.81418 0.80920 0.88454 0.88383 0.92527 0.92443 0.77680 0.88735 0.85485 0.90905 0.93407 0.93408 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.04 36.01 0.36 -0.35 16 2 C 0.21 2.64 7.90 -155.41 -1.23 1.41 16 3 N -0.50 -7.11 11.25 -10.82 -0.12 -7.23 16 4 C -0.03 -0.38 11.87 -17.81 -0.21 -0.59 16 5 C -0.06 -0.63 11.58 -16.56 -0.19 -0.82 16 6 N -0.45 -5.18 2.75 -113.90 -0.31 -5.49 16 7 C 0.10 0.95 5.79 -4.04 -0.02 0.92 16 8 C 0.13 1.80 5.19 -4.04 -0.02 1.78 16 9 N -0.74 -12.32 5.70 -60.35 -0.34 -12.67 16 10 C 0.28 6.10 7.64 -155.12 -1.19 4.92 16 11 C -0.20 -4.69 9.24 -39.64 -0.37 -5.06 16 12 C -0.09 -2.36 8.73 -39.01 -0.34 -2.70 16 13 C 0.04 0.97 5.58 -106.65 -0.59 0.38 16 14 C -0.45 -11.55 8.14 -37.85 -0.31 -11.86 16 15 H 0.08 1.95 6.86 -52.48 -0.36 1.59 16 16 C 0.07 1.79 5.19 -17.33 -0.09 1.70 16 17 N -0.80 -20.36 10.94 55.54 0.61 -19.75 16 18 Si 0.91 18.29 29.59 -169.99 -5.03 13.26 16 19 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 21 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 22 C 0.03 0.85 6.86 -81.79 -0.56 0.29 16 23 C -0.07 -1.45 9.57 36.01 0.34 -1.11 16 24 N -0.52 -12.23 10.29 -8.05 -0.08 -12.31 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.73 7.36 -51.93 -0.38 0.35 16 28 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.17 1.41 8.06 -52.48 -0.42 0.99 16 30 H 0.10 0.84 7.92 -51.93 -0.41 0.43 16 31 H 0.10 0.83 8.13 -51.93 -0.42 0.41 16 32 H 0.06 0.83 7.90 -51.93 -0.41 0.42 16 33 H 0.06 0.84 7.43 -51.93 -0.39 0.45 16 34 H 0.39 5.78 8.59 -40.82 -0.35 5.43 16 35 H 0.09 1.96 6.64 -52.49 -0.35 1.61 16 36 H 0.13 3.32 6.25 -52.49 -0.33 2.99 16 37 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.41 6.77 -51.93 -0.35 1.06 16 LS Contribution 336.00 15.07 5.06 5.06 Total: -1.00 -30.31 336.00 -10.06 -40.37 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.42 Total: 9.84 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -4.42 Total: -11.07 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.25 Total: -57.46 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.31 -10.06 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156009661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.799 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds