Wall clock time and date at job start Tue Mar 31 2020 05:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30505 * 125.64398 * 2 1 4 4 C 1.34133 * 109.25480 * 180.02562 * 3 2 1 5 5 C 1.34671 * 108.01704 * 359.73309 * 4 3 2 6 6 N 1.35039 * 125.65571 * 180.02562 * 2 1 3 7 7 C 1.46503 * 126.39635 * 359.95844 * 6 2 1 8 8 C 1.53000 * 109.46872 * 85.00080 * 7 6 2 9 9 N 1.46503 * 109.46872 * 179.97438 * 8 7 6 10 10 C 1.38367 * 119.99933 * 180.02562 * 9 8 7 11 11 C 1.39710 * 119.43206 * 0.02562 * 10 9 8 12 12 C 1.36558 * 119.49569 * 179.97438 * 11 10 9 13 13 C 1.41331 * 118.40923 * 359.97438 * 12 11 10 14 14 C 1.41199 * 120.57013 * 180.27645 * 13 12 11 15 15 H 1.08005 * 119.99655 * 154.59933 * 14 13 12 16 16 C 1.39873 * 120.00071 * 334.59455 * 14 13 12 17 17 N 1.30906 * 119.99751 * 344.03440 * 16 14 13 18 18 Si 1.86796 * 119.99856 * 164.02997 * 16 14 13 19 19 H 1.48508 * 109.46783 * 60.00485 * 18 16 14 20 20 H 1.48501 * 109.46756 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47382 * 300.00447 * 18 16 14 22 22 C 1.40751 * 118.85610 * 359.97438 * 13 12 11 23 23 C 1.50700 * 119.81525 * 180.02562 * 22 13 12 24 24 N 1.31484 * 120.37162 * 0.02562 * 22 13 12 25 25 H 1.09003 * 109.47122 * 269.94889 * 1 2 3 26 26 H 1.08990 * 109.47444 * 29.95603 * 1 2 3 27 27 H 1.09005 * 109.46842 * 149.95793 * 1 2 3 28 28 H 1.07994 * 125.99296 * 180.02562 * 4 3 2 29 29 H 1.08005 * 126.59451 * 180.28156 * 5 4 3 30 30 H 1.09005 * 109.46775 * 325.00444 * 7 6 2 31 31 H 1.09000 * 109.47234 * 205.00309 * 7 6 2 32 32 H 1.08999 * 109.46949 * 60.00952 * 8 7 6 33 33 H 1.09000 * 109.47378 * 300.00141 * 8 7 6 34 34 H 0.97003 * 119.99948 * 0.02562 * 9 8 7 35 35 H 1.08000 * 120.25242 * 359.95681 * 11 10 9 36 36 H 1.07998 * 120.79988 * 180.02562 * 12 11 10 37 37 H 0.96996 * 119.99679 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.47600 * 90.00165 * 23 22 13 39 39 H 1.08998 * 109.47181 * 209.99902 * 23 22 13 40 40 H 1.08996 * 109.47303 * 329.99963 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0606 0.0000 4 6 3.5543 0.6821 -0.0006 5 6 3.5926 -0.6641 0.0050 6 7 2.2942 -1.0972 -0.0005 7 6 1.8427 -2.4910 -0.0003 8 6 1.5651 -2.9373 -1.4371 9 7 1.1143 -4.3313 -1.4370 10 6 0.8017 -4.9574 -2.6306 11 6 0.9207 -4.2493 -3.8291 12 6 0.6131 -4.8662 -5.0079 13 6 0.1819 -6.2116 -4.9702 14 6 -0.1424 -6.8954 -6.1623 15 1 -0.0707 -7.9722 -6.2037 16 6 -0.5567 -6.1781 -7.2894 17 7 -0.9442 -4.9337 -7.1673 18 14 -0.5568 -6.9960 -8.9688 19 1 -1.4570 -8.1769 -8.9442 20 1 -1.0351 -6.0296 -9.9899 21 1 0.8219 -7.4315 -9.3074 22 6 0.0876 -6.8601 -3.7246 23 6 -0.3692 -8.2947 -3.6594 24 7 0.3958 -6.2212 -2.6175 25 1 -0.3633 -0.0009 1.0277 26 1 -0.3634 0.8903 -0.5131 27 1 -0.3633 -0.8897 -0.5145 28 1 4.4098 1.3413 -0.0003 29 1 4.4777 -1.2830 0.0104 30 1 0.9302 -2.5772 0.5897 31 1 2.6170 -3.1237 0.4336 32 1 2.4777 -2.8512 -2.0270 33 1 0.7908 -2.3046 -1.8710 34 1 1.0349 -4.8152 -0.6000 35 1 1.2533 -3.2218 -3.8232 36 1 0.6979 -4.3389 -5.9466 37 1 -1.2312 -4.4362 -7.9490 38 1 0.4949 -8.9550 -3.7335 39 1 -0.8807 -8.4705 -2.7130 40 1 -1.0523 -8.4964 -4.4845 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156009661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:20 Heat of formation + Delta-G solvation = 71.695526 kcal Electronic energy + Delta-G solvation = -21494.530918 eV Core-core repulsion = 18309.118278 eV Total energy + Delta-G solvation = -3185.412639 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.06124 -40.53733 -37.63386 -35.80425 -34.69753 -32.90812 -32.63991 -32.10964 -29.39935 -28.65408 -27.72025 -26.04789 -24.51045 -23.15449 -22.32704 -21.69453 -20.69619 -19.13167 -18.48451 -17.74035 -16.88976 -16.83627 -16.36140 -16.31313 -15.43595 -15.24594 -15.18414 -14.82056 -14.50938 -14.39213 -13.91300 -13.72696 -13.59039 -13.47658 -13.34301 -13.19413 -13.18627 -12.95277 -12.79134 -12.60267 -12.54068 -12.20645 -11.57410 -11.18177 -10.98052 -10.66479 -10.42689 -10.04252 -9.92831 -9.29635 -8.67120 -8.41444 -6.11574 0.86251 1.04727 1.11505 1.42014 1.52175 1.58097 1.66253 2.16145 2.24595 2.70107 2.82427 3.60209 3.64259 3.69905 3.75610 3.93252 4.13921 4.22745 4.39687 4.48017 4.57220 4.65247 4.66522 4.68258 4.68845 4.76226 4.87055 5.01926 5.04539 5.07755 5.21070 5.35044 5.36719 5.50696 5.63939 5.83470 5.85901 5.99987 6.21671 6.44282 6.59544 6.83940 6.94556 7.10717 7.13382 7.83741 8.40540 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.003290 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.035155 B = 8509.359583 C = 9166.086791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.193 3.807 3 N -0.533 5.533 4 C -0.054 4.054 5 C -0.053 4.053 6 N -0.453 5.453 7 C 0.106 3.894 8 C 0.136 3.864 9 N -0.728 5.728 10 C 0.288 3.712 11 C -0.215 4.215 12 C -0.112 4.112 13 C 0.002 3.998 14 C -0.481 4.481 15 H 0.084 0.916 16 C 0.032 3.968 17 N -0.839 5.839 18 Si 0.979 3.021 19 H -0.258 1.258 20 H -0.274 1.274 21 H -0.262 1.262 22 C 0.023 3.977 23 C -0.064 4.064 24 N -0.529 5.529 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.185 0.815 29 H 0.202 0.798 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.402 0.598 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.284 0.716 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.731 4.591 11.122 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 N -0.253 5.253 4 C -0.201 4.201 5 C -0.185 4.185 6 N -0.136 5.136 7 C -0.017 4.017 8 C 0.010 3.990 9 N -0.369 5.369 10 C 0.054 3.946 11 C -0.238 4.238 12 C -0.139 4.139 13 C -0.003 4.003 14 C -0.512 4.512 15 H 0.103 0.897 16 C -0.181 4.181 17 N -0.466 5.466 18 Si 0.800 3.200 19 H -0.182 1.182 20 H -0.199 1.199 21 H -0.187 1.187 22 C -0.116 4.116 23 C -0.122 4.122 24 N -0.246 5.246 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.202 0.798 29 H 0.219 0.781 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.238 0.762 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.287 5.176 11.693 13.487 hybrid contribution 0.418 -0.419 -1.545 1.654 sum 4.704 4.757 10.148 12.155 Atomic orbital electron populations 1.20316 0.83490 1.04512 1.04592 1.23814 0.96810 0.81451 1.04826 1.70222 1.03535 1.29659 1.21877 1.22700 0.94760 0.93955 1.08685 1.23226 0.87722 0.96919 1.10680 1.45380 1.06700 1.07277 1.54240 1.21969 1.04235 0.78936 0.96542 1.21269 0.98773 0.82365 0.96618 1.43283 1.77126 1.11541 1.04970 1.17886 1.01145 0.89184 0.86430 1.20937 1.09968 1.00132 0.92810 1.21295 0.99146 0.96391 0.97019 1.18501 0.94513 0.93288 0.94038 1.19571 1.40977 0.95276 0.95405 0.89750 1.26691 0.91735 0.95192 1.04452 1.69874 1.32278 1.11369 1.33123 0.85290 0.79702 0.78888 0.76087 1.18186 1.19863 1.18701 1.21280 1.05181 0.97901 0.87227 1.20243 1.00389 0.89945 1.01595 1.66431 1.17451 1.08355 1.32375 0.88492 0.89314 0.90089 0.79810 0.78070 0.86553 0.86048 0.93365 0.93448 0.76211 0.87101 0.87140 0.90513 0.91888 0.91930 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.04 71.24 0.71 -0.57 16 2 C 0.19 4.64 7.90 138.13 1.09 5.73 16 3 N -0.53 -14.95 11.25 -188.13 -2.12 -17.07 16 4 C -0.05 -1.27 11.87 83.52 0.99 -0.27 16 5 C -0.05 -1.05 11.58 83.09 0.96 -0.09 16 6 N -0.45 -9.35 2.75 -514.26 -1.41 -10.77 16 7 C 0.11 1.77 5.79 86.38 0.50 2.27 16 8 C 0.14 3.37 5.19 86.38 0.45 3.82 16 9 N -0.73 -22.46 5.70 -344.85 -1.97 -24.42 16 10 C 0.29 12.30 7.64 133.32 1.02 13.32 16 11 C -0.21 -9.86 9.24 22.23 0.21 -9.65 16 12 C -0.11 -5.84 8.73 22.64 0.20 -5.64 16 13 C 0.00 0.09 5.58 -21.18 -0.12 -0.03 16 14 C -0.48 -25.00 8.14 23.39 0.19 -24.81 16 15 H 0.08 4.14 6.86 -2.91 -0.02 4.12 16 16 C 0.03 1.60 5.19 85.23 0.44 2.04 16 17 N -0.84 -43.55 10.94 21.82 0.24 -43.31 16 18 Si 0.98 37.66 29.59 68.60 2.03 39.69 16 19 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 20 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 22 C 0.02 1.10 6.86 43.23 0.30 1.40 16 23 C -0.06 -2.60 9.57 71.24 0.68 -1.92 16 24 N -0.53 -24.51 10.29 -179.37 -1.85 -26.36 16 25 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.08 1.39 7.36 -2.38 -0.02 1.37 16 28 H 0.18 3.34 8.06 -2.91 -0.02 3.31 16 29 H 0.20 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.12 1.57 7.92 -2.38 -0.02 1.55 16 31 H 0.12 1.54 8.13 -2.39 -0.02 1.52 16 32 H 0.05 1.31 7.90 -2.39 -0.02 1.29 16 33 H 0.05 1.31 7.43 -2.39 -0.02 1.29 16 34 H 0.40 10.68 8.59 -92.71 -0.80 9.89 16 35 H 0.11 4.59 6.64 -2.91 -0.02 4.57 16 36 H 0.11 6.03 6.25 -2.91 -0.02 6.01 16 37 H 0.28 13.53 8.30 -92.71 -0.77 12.77 16 38 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.07 2.68 6.77 -2.39 -0.02 2.66 16 Total: -1.00 -66.40 336.00 2.81 -63.59 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 0.26 Total: 33.05 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 7.62 Total: -14.41 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -7.11 Total: -121.92 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -66.40 2.81 -63.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156009661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.286 kcal (2) G-P(sol) polarization free energy of solvation -66.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds